CmaCh07G002340 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G002340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDof zinc finger protein
LocationCma_Chr07 : 1078726 .. 1080088 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAACGTTCGGAAAGAGAAAGAAAAGGATCAATCGCCACCACTCCGCATCCATCTACCGCCGCCGCCGCCCCTGATCGCCCCCAGAATCCAACATATCCGTTTACGTAACAAAATGAAATCTTGTGCTTTTTCGTTTGAATTTATGTGAGGATCCCTTCTGGATTGGATGTGTGTTTTTTTTCAGACCATCATTTATTTTCAGCTCAATAATGTCTGCCGTACTTCTGTGTCTCTGAAACTAAATATAATTTCGCAAAATTTCAGTATCTTTTTTTAATTTTTTTTTTCTCGTAATAAAATTAAAAACCCCATCTTGTGTTAGAAAACCCTAGCTGATTCATGCAGAGAAGTGGGAAGTTGTTGAAGCCTAAAACGCTCTCCATTTAGTATTTCTCTAAGATCCCAAAAAACCCTTTTCGTTTCAAATCGATTGGTTGAGAGATGCAGCGTGGGCGAGATGATCAAGATCGGAGATTGAAGGCTCTACAACCGCAAAATCAAGCTCAGCCACAGCCACAAAAATGCCCTCGTTGTGATTCTCTCAACACAAAGTTTTGTTATTACAATAACTACAGCTTATCTCAGCCTCGTTATCTTTGCAAGACTTGTAGAAGGTACTGGACTCAAGGTGGTACTCTCCGTAACGTCCCCGTCGGCGGCGGCTGCCGGAAGGGTAAACGACCCAAACAATCTTCTCACTCATCCGACAACTCCAACTCACAACCGCTGCCATCACTCCCGCTGCCGCAGATAGTCCAATCCAGTTTAACAACAACTCCGCCACCCGTAATTTTCTCGGGTACTCCCGTCATCACGCCGTCCTCTTTTTTCAATCCTGGTGAGCAAGATTAGAATTTGACCTTAATTTAGTTTTTAAAAAAATCTCTTCTTTTTTCAGTATTTTTTTGAATCAATTTCTCCGTCCTCCCTATTTTGTTGGAATCGTGGAATAAAAAGAGATGGAATTTTTATGATGCAGTTGGAGAATTGGGGTCATCTTCGAGCTGGGTCAATTCATTTGGATCATCACAAGGGCAGCGTCCAATTCAACCACCAGAAGTAATCTACGAAATAATGGACCAATCATCAGGGAAAGCCGCCGTGAGTTCATCTTCTCAAGCAGGGTGGTCGGAAAGTTACATCAACAATTATATTTCAAACCCAATGGCCGCTGCCGGAGAGAACCTTGTTTGGACACCCAACAACAACAACAACGATACCCCCACGACCACCGCAGGCAACCCCACGAACAATAGTACTACAATTAACCAGTGGCCTGATTACATGAAGGGATTCGATCCACCCCCATGACATGATCGATCACAAATCAGTGGAATTCGATTCTTTCTTTTCAAAAAAAA

mRNA sequence

AGAAACGTTCGGAAAGAGAAAGAAAAGGATCAATCGCCACCACTCCGCATCCATCTACCGCCGCCGCCGCCCCTGATCGCCCCCAGAATCCAACATATCCGTTTACGTAACAAAATGAAATCTTGTGCTTTTTCGTTTGAATTTATGTGAGGATCCCTTCTGGATTGGATGTGTGTTTTTTTTCAGACCATCATTTATTTTCAGCTCAATAATGTCTGCCGTACTTCTGTGTCTCTGAAACTAAATATAATTTCGCAAAATTTCAGTATCTTTTTTTAATTTTTTTTTTCTCGTAATAAAATTAAAAACCCCATCTTGTGTTAGAAAACCCTAGCTGATTCATGCAGAGAAGTGGGAAGTTGTTGAAGCCTAAAACGCTCTCCATTTAGTATTTCTCTAAGATCCCAAAAAACCCTTTTCGTTTCAAATCGATTGGTTGAGAGATGCAGCGTGGGCGAGATGATCAAGATCGGAGATTGAAGGCTCTACAACCGCAAAATCAAGCTCAGCCACAGCCACAAAAATGCCCTCGTTGTGATTCTCTCAACACAAAGTTTTGTTATTACAATAACTACAGCTTATCTCAGCCTCGTTATCTTTGCAAGACTTGTAGAAGGTACTGGACTCAAGGTGGTACTCTCCGTAACGTCCCCGTCGGCGGCGGCTGCCGGAAGGGTAAACGACCCAAACAATCTTCTCACTCATCCGACAACTCCAACTCACAACCGCTGCCATCACTCCCGCTGCCGCAGATAGTCCAATCCAGTTTAACAACAACTCCGCCACCCGTAATTTTCTCGGGTACTCCCGTCATCACGCCGTCCTCTTTTTTCAATCCTGTTGGAGAATTGGGGTCATCTTCGAGCTGGGTCAATTCATTTGGATCATCACAAGGGCAGCGTCCAATTCAACCACCAGAAGTAATCTACGAAATAATGGACCAATCATCAGGGAAAGCCGCCGTGAGTTCATCTTCTCAAGCAGGGTGGTCGGAAAGTTACATCAACAATTATATTTCAAACCCAATGGCCGCTGCCGGAGAGAACCTTGTTTGGACACCCAACAACAACAACAACGATACCCCCACGACCACCGCAGGCAACCCCACGAACAATAGTACTACAATTAACCAGTGGCCTGATTACATGAAGGGATTCGATCCACCCCCATGACATGATCGATCACAAATCAGTGGAATTCGATTCTTTCTTTTCAAAAAAAA

Coding sequence (CDS)

ATGCAGCGTGGGCGAGATGATCAAGATCGGAGATTGAAGGCTCTACAACCGCAAAATCAAGCTCAGCCACAGCCACAAAAATGCCCTCGTTGTGATTCTCTCAACACAAAGTTTTGTTATTACAATAACTACAGCTTATCTCAGCCTCGTTATCTTTGCAAGACTTGTAGAAGGTACTGGACTCAAGGTGGTACTCTCCGTAACGTCCCCGTCGGCGGCGGCTGCCGGAAGGGTAAACGACCCAAACAATCTTCTCACTCATCCGACAACTCCAACTCACAACCGCTGCCATCACTCCCGCTGCCGCAGATAGTCCAATCCAGTTTAACAACAACTCCGCCACCCGTAATTTTCTCGGGTACTCCCGTCATCACGCCGTCCTCTTTTTTCAATCCTGTTGGAGAATTGGGGTCATCTTCGAGCTGGGTCAATTCATTTGGATCATCACAAGGGCAGCGTCCAATTCAACCACCAGAAGTAATCTACGAAATAATGGACCAATCATCAGGGAAAGCCGCCGTGAGTTCATCTTCTCAAGCAGGGTGGTCGGAAAGTTACATCAACAATTATATTTCAAACCCAATGGCCGCTGCCGGAGAGAACCTTGTTTGGACACCCAACAACAACAACAACGATACCCCCACGACCACCGCAGGCAACCCCACGAACAATAGTACTACAATTAACCAGTGGCCTGATTACATGAAGGGATTCGATCCACCCCCATGA

Protein sequence

MQRGRDDQDRRLKALQPQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLRNVPVGGGCRKGKRPKQSSHSSDNSNSQPLPSLPLPQIVQSSLTTTPPPVIFSGTPVITPSSFFNPVGELGSSSSWVNSFGSSQGQRPIQPPEVIYEIMDQSSGKAAVSSSSQAGWSESYINNYISNPMAAAGENLVWTPNNNNNDTPTTTAGNPTNNSTTINQWPDYMKGFDPPP
Homology
[Close]
BLAST of CmaCh07G002340 vs. Swiss-Prot
Match: DOF54_ARATH (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-25
Identity = 56/87 (64.37%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 9   DRRLKALQPQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLRN 68
           DRR++A Q       Q  KCPRC+SLNTKFCYYNNY+LSQPR+ CK CRRYWT+GG LRN
Sbjct: 34  DRRMRAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRN 93

Query: 69  VPVGGGCRKGKRPKQSSHSSDNSNSQP 96
           VPVGGGCRK KR K     S +S  +P
Sbjct: 94  VPVGGGCRKAKRSKTKQVPSSSSADKP 120

[Close]
BLAST of CmaCh07G002340 vs. Swiss-Prot
Match: DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-25
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = 1 

Query: 22  QPQPQ----KCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLRNVPVGGGCRK 81
           +PQP     +CPRCDS NTKFCYYNNYSL+QPRY CK+CRRYWT+GGTLRN+PVGGGCRK
Sbjct: 47  RPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRK 106

Query: 82  GKRPKQSSHSSDNSNSQP 96
            KR   S+  S  +  +P
Sbjct: 107 NKRSTSSAARSLRTTPEP 124

[Close]
BLAST of CmaCh07G002340 vs. Swiss-Prot
Match: DOF14_ARATH (Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-24
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1 

Query: 16 QPQNQAQPQPQ-KCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLRNVPVGGG 75
          Q Q   QPQPQ KCPRCDS NTKFCYYNNYSLSQPR+ CK C+RYWT+GGTLRNVPVGG 
Sbjct: 16 QQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGS 75

Query: 76 CRKGKRPKQSSHSSDNSNS 94
           RK KR K+ S ++  + S
Sbjct: 76 YRKNKRVKRPSTATTTTAS 94

[Close]
BLAST of CmaCh07G002340 vs. Swiss-Prot
Match: DOF24_ARATH (Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-24
Identity = 50/76 (65.79%), Postives = 64/76 (84.21%), Query Frame = 1 

Query: 19  NQAQPQPQ-KCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLRNVPVGGGCRK 78
           N A P+   KCPRC+S NTKFCY+NNYSL+QPR+ CKTCRRYWT+GG LRNVPVGGGCR+
Sbjct: 81  NVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRR 140

Query: 79  GKRPKQSSHSSDNSNS 94
            +R K +S++++NS +
Sbjct: 141 NRRTKSNSNNNNNSTA 156

[Close]
BLAST of CmaCh07G002340 vs. Swiss-Prot
Match: PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-24
Identity = 60/129 (46.51%), Postives = 80/129 (62.02%), Query Frame = 1 

Query: 8   QDRRLKALQPQNQAQPQPQ-----KCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQ 67
           Q R +  +    + +P+PQ     KCPRCDS NTKFCYYNNYS+SQPRY CK CRRYWT 
Sbjct: 37  QTRAMPQIGGSGERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTH 96

Query: 68  GGTLRNVPVGGGCRKGKRPKQ---SSHSSDNSNSQPLPSLPLPQIVQSSLTTTPPPVIFS 127
           GGTLRNVP+GGGCRK K   +    SH+S +S++   P  P      S+++     ++  
Sbjct: 97  GGTLRNVPIGGGCRKNKHASRFVLGSHTSSSSSATYAPLSPSTNASSSNMSINKHMMMVP 156

Query: 128 GTPVITPSS 129
              + TP++
Sbjct: 157 NMTMPTPTT 165

[Close]
BLAST of CmaCh07G002340 vs. TrEMBL
Match: A0A0A0KLH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517940 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.3e-78
Identity = 171/243 (70.37%), Postives = 186/243 (76.54%), Query Frame = 1 

Query: 8   QDRRLKALQPQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLR 67
           QDRRLK++Q Q+Q QPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWT GGTLR
Sbjct: 4   QDRRLKSVQVQDQVQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTHGGTLR 63

Query: 68  NVPVGGGCRKGKRPKQSSHSSDNSNSQPL-----PSLPLPQIVQSSL-TTTPPPVIFSGT 127
           NVPVGGGCRKGKR KQ S SS+NS+ +PL       LP PQIV  SL TTT   VI+SGT
Sbjct: 64  NVPVGGGCRKGKRLKQPSQSSNNSSVKPLVQTSASPLPPPQIVPLSLSTTTSQHVIYSGT 123

Query: 128 PVITPSSFFNPVGELGSSSSWVNSFGSSQGQRPIQPPEVIYEIMDQSSGKA-AVSSSSQA 187
           PVITP SFFN  GEL SSSSW++SFGSS      Q PE+IY++MDQSSGKA A SSS  A
Sbjct: 124 PVITPPSFFNSGGELLSSSSWISSFGSSS-----QGPEIIYDMMDQSSGKADANSSSPAA 183

Query: 188 GWSESYI-NNYISNPMAAAGENLVWTPNNNNNDTPTTTAGNPTNNSTTINQWPDYMKGFD 243
           GWSESYI NN ISNP+AA G+ +VW    NNN    T A   T N  TINQWPDYM GF 
Sbjct: 184 GWSESYINNNSISNPIAATGDAVVWPAGENNN---ATLAAATTTNIATINQWPDYMPGFC 238

[Close]
BLAST of CmaCh07G002340 vs. TrEMBL
Match: A0A0D2UNM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G168400 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 93/143 (65.03%), Postives = 104/143 (72.73%), Query Frame = 1 

Query: 8   QDRRLKALQPQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLR 67
           QD+RLK L  +NQ Q  PQKCPRC+SLNTKFCYYNNYSLSQPRY CKTCRRYWTQGGTLR
Sbjct: 20  QDQRLKPLTGENQQQHPPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLR 79

Query: 68  NVPVGGGCRKGKRPKQSSHSSDNSNSQPLPSLPLPQIVQSSLTTTPPPVIFSGTPVITPS 127
           NVPVGGGCRKGKR K SS S +NS SQPL  +P  Q  Q    T+P  +I S  P+I+ S
Sbjct: 80  NVPVGGGCRKGKRTKVSS-SGENSRSQPL--IPQQQAAQQHSLTSPQSMI-SSNPMISVS 139

Query: 128 SFFNPVGELGS--SSSWVNSFGS 149
           + F    E GS  SSS + S GS
Sbjct: 140 AAFR-TKESGSLASSSAIPSVGS 157

[Close]
BLAST of CmaCh07G002340 vs. TrEMBL
Match: A0A067GD59_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042156mg PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.6e-35
Identity = 90/164 (54.88%), Postives = 104/164 (63.41%), Query Frame = 1 

Query: 5   RDDQDRRLKALQ-----PQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRY 64
           R  QDRRLK +Q      Q Q QPQPQKCPRC+SLNTKFCYYNNYSLSQPRY CKTCRRY
Sbjct: 13  RKQQDRRLKTMQGGTENQQQQEQPQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRY 72

Query: 65  WTQGGTLRNVPVGGGCRKGKRPKQSSHSSDNSNSQPLPSLPLPQIVQSSLTTTPPPVIFS 124
           WTQGGTLRNVPVGGGCRKGKR K SS S + S +   P  P P     +LTTT   ++ S
Sbjct: 73  WTQGGTLRNVPVGGGCRKGKRTKTSSVSGEASRASQPPQPPSPP--HPNLTTTQQNILSS 132

Query: 125 GTPVIT-----------PSSFFNPVGELGSSSSWVNSFGSSQGQ 153
             PVIT           P++    +G    S  +++S  + Q Q
Sbjct: 133 SNPVITTGPPVLRTKLEPAAASPSMGSYYPSGGFLSSLAAIQSQ 174

[Close]
BLAST of CmaCh07G002340 vs. TrEMBL
Match: V4UEJ3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015879mg PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.2e-34
Identity = 88/162 (54.32%), Postives = 105/162 (64.81%), Query Frame = 1 

Query: 5   RDDQDRRLKALQ-----PQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRY 64
           R  QDRRLK +Q      Q Q QPQPQKCPRC+SLNTKFCYYNNYSLSQPRY CKTCRRY
Sbjct: 13  RKQQDRRLKTMQGGTENQQQQEQPQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRY 72

Query: 65  WTQGGTLRNVPVGGGCRKGKRPKQSSHSSDNSNSQPLPSLPLP-----QIVQSSLTTTPP 124
           WTQGGTLRNVPVGGGCRKGKR K SS S + S +   P  P P        Q ++ ++  
Sbjct: 73  WTQGGTLRNVPVGGGCRKGKRTKTSSVSGEASRASQPPQPPSPPHPNFTTTQQNILSSSN 132

Query: 125 PVIFSGTPV----ITPSSFFNPVGELGSSSSWVNSFGSSQGQ 153
           PVI +G PV    + P++    +G    S  +++S  + Q Q
Sbjct: 133 PVITTGPPVLRTKLEPAAAPPSMGSYYPSGGFLSSLAAIQSQ 174

[Close]
BLAST of CmaCh07G002340 vs. TrEMBL
Match: A0A0B2QYB9_GLYSO (Dof zinc finger protein DOF5.3 OS=Glycine soja GN=glysoja_045887 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.9e-34
Identity = 112/272 (41.18%), Postives = 151/272 (55.51%), Query Frame = 1 

Query: 8   QDRRLKAL-----QPQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQ 67
           +D R+K +     Q Q QA  QPQKCPRCDSLNTKFCYYNNYSLSQPRY CKTCRRYWTQ
Sbjct: 16  RDSRVKEIRQGDAQIQVQAPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQ 75

Query: 68  GGTLRNVPVGGGCRKGKRPKQSSHSSD---NSNSQPLP---SLPLPQIVQSSLTTTPPPV 127
           GGTLRNVPVGGGCRKGKR K S+ SS    NS+S+ LP     P   +VQ+        V
Sbjct: 76  GGTLRNVPVGGGCRKGKRAKSSNSSSSENMNSSSRSLPQQQQQPQGVVVQTQAPPLTTVV 135

Query: 128 IFSGTPVITPSSFFNPVGELGSSSS--WVNSFGSSQGQRPIQPPEV-------------I 187
                  +  S+F+   G+   SS+   ++ F   +   PI PP +             +
Sbjct: 136 KAKDPSSVVASTFYQSGGDTLRSSNLGLLSGFNVQRPIGPIHPPHLYHQMGSGEREMVSL 195

Query: 188 YE--IMDQSSGKAAVSSSSQAG-----WSESYINNYISNPMAAAGENLVWTPNN---NNN 243
           YE  +++ SS   A + ++ +G     W  S+INN  +N    A +  +W+  +     N
Sbjct: 196 YEQGLVNPSSSSMANTDTNSSGVSQHDWPMSFINNNNNNASNRASDASLWSTISTTVGGN 255

[Close]
BLAST of CmaCh07G002340 vs. TAIR10
Match: AT5G60850.1 (AT5G60850.1 OBF binding protein 4)

HSP 1 Score: 118.2 bits (295), Expect = 6.8e-27
Identity = 56/87 (64.37%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 9   DRRLKALQPQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLRN 68
           DRR++A Q       Q  KCPRC+SLNTKFCYYNNY+LSQPR+ CK CRRYWT+GG LRN
Sbjct: 34  DRRMRAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRN 93

Query: 69  VPVGGGCRKGKRPKQSSHSSDNSNSQP 96
           VPVGGGCRK KR K     S +S  +P
Sbjct: 94  VPVGGGCRKAKRSKTKQVPSSSSADKP 120

[Close]
BLAST of CmaCh07G002340 vs. TAIR10
Match: AT5G60200.1 (AT5G60200.1 TARGET OF MONOPTEROS 6)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-26
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = 1 

Query: 22  QPQPQ----KCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLRNVPVGGGCRK 81
           +PQP     +CPRCDS NTKFCYYNNYSL+QPRY CK+CRRYWT+GGTLRN+PVGGGCRK
Sbjct: 47  RPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRK 106

Query: 82  GKRPKQSSHSSDNSNSQP 96
            KR   S+  S  +  +P
Sbjct: 107 NKRSTSSAARSLRTTPEP 124

[Close]
BLAST of CmaCh07G002340 vs. TAIR10
Match: AT1G28310.2 (AT1G28310.2 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 115.2 bits (287), Expect = 5.8e-26
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1 

Query: 16  QPQNQAQPQPQ-KCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLRNVPVGGG 75
           Q Q   QPQPQ KCPRCDS NTKFCYYNNYSLSQPR+ CK C+RYWT+GGTLRNVPVGG 
Sbjct: 30  QQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGS 89

Query: 76  CRKGKRPKQSSHSSDNSNS 94
            RK KR K+ S ++  + S
Sbjct: 90  YRKNKRVKRPSTATTTTAS 108

[Close]
BLAST of CmaCh07G002340 vs. TAIR10
Match: AT2G37590.1 (AT2G37590.1 DNA binding with one finger 2.4)

HSP 1 Score: 114.8 bits (286), Expect = 7.6e-26
Identity = 50/76 (65.79%), Postives = 64/76 (84.21%), Query Frame = 1 

Query: 19  NQAQPQPQ-KCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLRNVPVGGGCRK 78
           N A P+   KCPRC+S NTKFCY+NNYSL+QPR+ CKTCRRYWT+GG LRNVPVGGGCR+
Sbjct: 81  NVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRR 140

Query: 79  GKRPKQSSHSSDNSNS 94
            +R K +S++++NS +
Sbjct: 141 NRRTKSNSNNNNNSTA 156

[Close]
BLAST of CmaCh07G002340 vs. TAIR10
Match: AT4G00940.1 (AT4G00940.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-25
Identity = 58/109 (53.21%), Postives = 80/109 (73.39%), Query Frame = 1 

Query: 6   DDQDRRLKALQPQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGT 65
           DD+ + +  +  + Q   +P+ CPRC+S NTKFCYYNNYSL+QPRYLCK+CRRYWT+GG+
Sbjct: 51  DDEKKLMTTMSTRPQ---EPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGS 110

Query: 66  LRNVPVGGGCRKGKRPKQSSHSSDNSNSQPLPSLPLPQIVQSSLTTTPP 115
           LRNVPVGGG RK K+     +SS +S+++ LP L  P +  SS +++ P
Sbjct: 111 LRNVPVGGGSRKNKK-LPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNP 155

[Close]
BLAST of CmaCh07G002340 vs. NCBI nr
Match: gi|659078665|ref|XP_008439844.1| (PREDICTED: dof zinc finger protein DOF1.4-like [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 2.1e-78
Identity = 172/246 (69.92%), Postives = 186/246 (75.61%), Query Frame = 1 

Query: 8   QDRRLKALQPQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLR 67
           QDRRLK++Q Q+Q QPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWT GGTLR
Sbjct: 4   QDRRLKSVQVQDQVQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTHGGTLR 63

Query: 68  NVPVGGGCRKGKRPKQSSHSSDNSNS--------QPLPSLPLPQIVQSSL-TTTPPPVIF 127
           NVPVGGGCRKGKR KQSS SS+N++S           P LP PQIV  SL TTT   VIF
Sbjct: 64  NVPVGGGCRKGKRLKQSSQSSNNNSSVKSSLVQTSASPVLPPPQIVPLSLSTTTSQHVIF 123

Query: 128 SGTPVITPSSFFNPVGELGSSSSWVNSFGSSQGQRPIQPPEVIYEIMDQSSGKA-AVSSS 187
           SGTPVITP SFFN  GEL SSSSW+NSFGSS      Q PE+IY++MDQSSGKA A SSS
Sbjct: 124 SGTPVITPPSFFNSGGELLSSSSWINSFGSSS-----QGPEIIYDMMDQSSGKADANSSS 183

Query: 188 SQAGWSESYI-NNYISNPMAAAGENLVWTPNNNNNDTPTTTAGNPTNNSTTINQWPDYMK 243
             AGWSESYI NN ISNPMAA G+ +VW    NN     T A   + N+ TINQWPDYM 
Sbjct: 184 PAAGWSESYINNNSISNPMAATGDAVVWPAGENN----ATLAAATSTNNATINQWPDYMP 240

[Close]
BLAST of CmaCh07G002340 vs. NCBI nr
Match: gi|449434340|ref|XP_004134954.1| (PREDICTED: dof zinc finger protein DOF1.4-like [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 4.7e-78
Identity = 171/243 (70.37%), Postives = 186/243 (76.54%), Query Frame = 1 

Query: 8   QDRRLKALQPQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLR 67
           QDRRLK++Q Q+Q QPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWT GGTLR
Sbjct: 4   QDRRLKSVQVQDQVQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTHGGTLR 63

Query: 68  NVPVGGGCRKGKRPKQSSHSSDNSNSQPL-----PSLPLPQIVQSSL-TTTPPPVIFSGT 127
           NVPVGGGCRKGKR KQ S SS+NS+ +PL       LP PQIV  SL TTT   VI+SGT
Sbjct: 64  NVPVGGGCRKGKRLKQPSQSSNNSSVKPLVQTSASPLPPPQIVPLSLSTTTSQHVIYSGT 123

Query: 128 PVITPSSFFNPVGELGSSSSWVNSFGSSQGQRPIQPPEVIYEIMDQSSGKA-AVSSSSQA 187
           PVITP SFFN  GEL SSSSW++SFGSS      Q PE+IY++MDQSSGKA A SSS  A
Sbjct: 124 PVITPPSFFNSGGELLSSSSWISSFGSSS-----QGPEIIYDMMDQSSGKADANSSSPAA 183

Query: 188 GWSESYI-NNYISNPMAAAGENLVWTPNNNNNDTPTTTAGNPTNNSTTINQWPDYMKGFD 243
           GWSESYI NN ISNP+AA G+ +VW    NNN    T A   T N  TINQWPDYM GF 
Sbjct: 184 GWSESYINNNSISNPIAATGDAVVWPAGENNN---ATLAAATTTNIATINQWPDYMPGFC 238

[Close]
BLAST of CmaCh07G002340 vs. NCBI nr
Match: gi|823229938|ref|XP_012447707.1| (PREDICTED: dof zinc finger protein DOF1.2-like [Gossypium raimondii])

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 93/143 (65.03%), Postives = 104/143 (72.73%), Query Frame = 1 

Query: 8   QDRRLKALQPQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTQGGTLR 67
           QD+RLK L  +NQ Q  PQKCPRC+SLNTKFCYYNNYSLSQPRY CKTCRRYWTQGGTLR
Sbjct: 20  QDQRLKPLTGENQQQHPPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLR 79

Query: 68  NVPVGGGCRKGKRPKQSSHSSDNSNSQPLPSLPLPQIVQSSLTTTPPPVIFSGTPVITPS 127
           NVPVGGGCRKGKR K SS S +NS SQPL  +P  Q  Q    T+P  +I S  P+I+ S
Sbjct: 80  NVPVGGGCRKGKRTKVSS-SGENSRSQPL--IPQQQAAQQHSLTSPQSMI-SSNPMISVS 139

Query: 128 SFFNPVGELGS--SSSWVNSFGS 149
           + F    E GS  SSS + S GS
Sbjct: 140 AAFR-TKESGSLASSSAIPSVGS 157

[Close]
BLAST of CmaCh07G002340 vs. NCBI nr
Match: gi|568826823|ref|XP_006467768.1| (PREDICTED: dof zinc finger protein DOF2.1-like [Citrus sinensis])

HSP 1 Score: 157.1 bits (396), Expect = 3.8e-35
Identity = 84/126 (66.67%), Postives = 91/126 (72.22%), Query Frame = 1 

Query: 5   RDDQDRRLKALQ-----PQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRY 64
           R  QDRRLK +Q      Q Q QPQPQKCPRC+SLNTKFCYYNNYSLSQPRY CKTCRRY
Sbjct: 26  RKQQDRRLKTMQGGTENQQQQEQPQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRY 85

Query: 65  WTQGGTLRNVPVGGGCRKGKRPKQSSHSSDNSNSQPLPSLPLPQIVQSSLTTTPPPVIFS 124
           WTQGGTLRNVPVGGGCRKGKR K SS S + S +   P  P P     +LTTT   ++ S
Sbjct: 86  WTQGGTLRNVPVGGGCRKGKRTKTSSVSGEASRASQPPQPPSPP--HPNLTTTQQNILSS 145

Query: 125 GTPVIT 126
             PVIT
Sbjct: 146 SNPVIT 149

[Close]
BLAST of CmaCh07G002340 vs. NCBI nr
Match: gi|641858928|gb|KDO77618.1| (hypothetical protein CISIN_1g042156mg [Citrus sinensis])

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 90/164 (54.88%), Postives = 104/164 (63.41%), Query Frame = 1 

Query: 5   RDDQDRRLKALQ-----PQNQAQPQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRY 64
           R  QDRRLK +Q      Q Q QPQPQKCPRC+SLNTKFCYYNNYSLSQPRY CKTCRRY
Sbjct: 13  RKQQDRRLKTMQGGTENQQQQEQPQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRY 72

Query: 65  WTQGGTLRNVPVGGGCRKGKRPKQSSHSSDNSNSQPLPSLPLPQIVQSSLTTTPPPVIFS 124
           WTQGGTLRNVPVGGGCRKGKR K SS S + S +   P  P P     +LTTT   ++ S
Sbjct: 73  WTQGGTLRNVPVGGGCRKGKRTKTSSVSGEASRASQPPQPPSPP--HPNLTTTQQNILSS 132

Query: 125 GTPVIT-----------PSSFFNPVGELGSSSSWVNSFGSSQGQ 153
             PVIT           P++    +G    S  +++S  + Q Q
Sbjct: 133 SNPVITTGPPVLRTKLEPAAASPSMGSYYPSGGFLSSLAAIQSQ 174

The following BLAST results are available for this feature:
BLAST of CmaCh07G002340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DOF54_ARATH1.2e-2564.37Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2[more]
DOF53_ARATH6.0e-2566.67Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1[more]
DOF14_ARATH1.0e-2469.62Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1[more]
DOF24_ARATH1.3e-2465.79Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1[more]
PBF_MAIZE3.0e-2446.51Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1[more]
BLAST of CmaCh07G002340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLH8_CUCSA3.3e-7870.37Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517940 PE=4 SV=1[more]
A0A0D2UNM9_GOSRA1.5e-3565.03Uncharacterized protein OS=Gossypium raimondii GN=B456_009G168400 PE=4 SV=1[more]
A0A067GD59_CITSI7.6e-3554.88Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042156mg PE=4 SV=1[more]
V4UEJ3_9ROSI2.2e-3454.32Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015879mg PE=4 SV=1[more]
A0A0B2QYB9_GLYSO4.9e-3441.18Dof zinc finger protein DOF5.3 OS=Glycine soja GN=glysoja_045887 PE=4 SV=1[more]
BLAST of CmaCh07G002340 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60850.16.8e-2764.37 OBF binding protein 4[more]
AT5G60200.13.4e-2666.67 TARGET OF MONOPTEROS 6[more]
AT1G28310.25.8e-2669.62 Dof-type zinc finger DNA-binding family protein[more]
AT2G37590.17.6e-2665.79 DNA binding with one finger 2.4[more]
AT4G00940.11.7e-2553.21 Dof-type zinc finger DNA-binding family protein[more]
BLAST of CmaCh07G002340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659078665|ref|XP_008439844.1|2.1e-7869.92PREDICTED: dof zinc finger protein DOF1.4-like [Cucumis melo][more]
gi|449434340|ref|XP_004134954.1|4.7e-7870.37PREDICTED: dof zinc finger protein DOF1.4-like [Cucumis sativus][more]
gi|823229938|ref|XP_012447707.1|2.2e-3565.03PREDICTED: dof zinc finger protein DOF1.2-like [Gossypium raimondii][more]
gi|568826823|ref|XP_006467768.1|3.8e-3566.67PREDICTED: dof zinc finger protein DOF2.1-like [Citrus sinensis][more]
gi|641858928|gb|KDO77618.1|1.1e-3454.88hypothetical protein CISIN_1g042156mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003851Znf_Dof
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G002340.1CmaCh07G002340.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePRODOMPD007478coord: 27..80
score: 2.0
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 25..80
score: 1.1
IPR003851Zinc finger, Dof-typePROSITEPS01361ZF_DOF_1coord: 28..64
scor
IPR003851Zinc finger, Dof-typePROFILEPS50884ZF_DOF_2coord: 26..80
score: 28
NoneNo IPR availablePANTHERPTHR31992FAMILY NOT NAMEDcoord: 9..236
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh07G002340Cucsa.126800Cucumber (Gy14) v1cgycmaB0341
CmaCh07G002340Csa1G074960Cucumber (Chinese Long) v2cmacuB848
CmaCh07G002340MELO3C002616Melon (DHL92) v3.5.1cmameB782
CmaCh07G002340MELO3C007275Melon (DHL92) v3.5.1cmameB798
CmaCh07G002340CSPI01G12230Wild cucumber (PI 183967)cmacpiB865
CmaCh07G002340Lsi02G007650Bottle gourd (USVL1VR-Ls)cmalsiB796
CmaCh07G002340Cp4.1LG19g07290Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G002340MELO3C002616.2Melon (DHL92) v3.6.1cmamedB883
CmaCh07G002340CsaV3_1G012420Cucumber (Chinese Long) v3cmacucB1005
CmaCh07G002340CsaV3_6G050220Cucumber (Chinese Long) v3cmacucB1035
CmaCh07G002340Cla97C03G059430Watermelon (97103) v2cmawmbB887
CmaCh07G002340Cla97C01G022970Watermelon (97103) v2cmawmbB875
CmaCh07G002340CsGy6G034250Cucumber (Gy14) v2cgybcmaB861
CmaCh07G002340CsGy1G012250Cucumber (Gy14) v2cgybcmaB142
CmaCh07G002340Carg07776Silver-seed gourdcarcmaB0914
CmaCh07G002340Carg14618Silver-seed gourdcarcmaB0201
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh07G002340CmaCh18G003800Cucurbita maxima (Rimu)cmacmaB413
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G002340Wax gourdcmawgoB1058
CmaCh07G002340Wax gourdcmawgoB1086
CmaCh07G002340Cucurbita maxima (Rimu)cmacmaB069
CmaCh07G002340Cucurbita maxima (Rimu)cmacmaB238
CmaCh07G002340Cucurbita maxima (Rimu)cmacmaB439
CmaCh07G002340Cucurbita maxima (Rimu)cmacmaB464
CmaCh07G002340Cucurbita maxima (Rimu)cmacmaB508
CmaCh07G002340Cucurbita maxima (Rimu)cmacmaB528
CmaCh07G002340Cucumber (Gy14) v1cgycmaB0048
CmaCh07G002340Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G002340Cucurbita moschata (Rifu)cmacmoB847
CmaCh07G002340Cucurbita moschata (Rifu)cmacmoB849
CmaCh07G002340Cucurbita moschata (Rifu)cmacmoB861
CmaCh07G002340Wild cucumber (PI 183967)cmacpiB893
CmaCh07G002340Cucumber (Chinese Long) v2cmacuB877
CmaCh07G002340Watermelon (Charleston Gray)cmawcgB754
CmaCh07G002340Watermelon (Charleston Gray)cmawcgB759
CmaCh07G002340Watermelon (97103) v1cmawmB826
CmaCh07G002340Watermelon (97103) v1cmawmB819
CmaCh07G002340Cucurbita pepo (Zucchini)cmacpeB859
CmaCh07G002340Cucurbita pepo (Zucchini)cmacpeB861
CmaCh07G002340Cucurbita pepo (Zucchini)cmacpeB881
CmaCh07G002340Cucurbita pepo (Zucchini)cmacpeB887
CmaCh07G002340Bottle gourd (USVL1VR-Ls)cmalsiB786
CmaCh07G002340Silver-seed gourdcarcmaB1300
CmaCh07G002340Melon (DHL92) v3.6.1cmamedB897
CmaCh07G002340Silver-seed gourdcarcmaB0229
CmaCh07G002340Silver-seed gourdcarcmaB0766
CmaCh07G002340Watermelon (97103) v2cmawmbB880