CmaCh07G001080 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G001080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr07 : 590715 .. 592055 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGACAACGTTAAGAAATTCACATGTAGCTGAGTTTGAGCTATATGTCAACTTTTGTTGCGGACATTTGAAGTCATCCAGATTTTAAGTTCTGCCCTTGACCAATCATATCTCGCCAGGTTGCCCTGTTTCCCCAAACAATTAAAAATAGGAAGGACTGCATGATGAACTTATAGATCTCATTTTTGTCTAAATCATCCATTTTTTTATGCTCATAATTTGATTGTCGAAGATTTTGGCTGAAATGGGTGCCTGAGGAATCAGCTTTTGGCTGAAATGTCATGACTTATATTGAAAATAAAAACCCCCCAAAGAAAGGGAAGAGAAGAAAAGAAAATACCAGTTTCAGTTTGGGCATCAAATTCTCAGTGTTCTATGAGTGGCTGTCACTGATGATCCCAATTTCCCACCACACATAAGAACAGAACAAGATTCCAGTGGGAATTTTTGCTAATATACTTCATTCTTTGTGAAAGATGCCAATTGCTTATCACGAACAGGCAAGAAATTTCGTATGAGTTTTTGTGTTCTTCAATTTCTGGATTTCAAGTTTTTCATTTGAACAGCCGCAATTGAAGATGAACTTAACTTCTACAATACTAAAACACCTTGGGAGATTCGAACACTAGCGTTCATCATCCAACAAGATCACCAAATTTAGAAGATGAAAGTACATGAAGTCTACAATTGAAATTTAATTCAGAGTAATTTCACTTTTCTGCAACCGAATTCATACTAATTGAACTAAAATAAGCAGGAGATCTGTGCCCTAGTTTTAAGAGAACATAGATTTGTATCATCAAATTACCCGAATTGACTCGTAATTTTGTAGAATTCACCGATCCTTTCCTTCGTTCCCCAATTATTTTTACTTCTTCTGATCAGTTCCTTCTTCAATTAGAAACGCAGAGACCGGGAAAGACTTGGAAATTCCAGTCAGAGTACCAAACGTGATCCTACTCGTGTTGTGTACATCAATATAAATATCGGAAACGGTGATCGAAAAGAAGAACTCCTTGCTCTTAACTCCGGTGAGGCGGCGGAGGCGGCGCTCCTCGATAAAGGCGGTAACCTCGGTGTCGTACAAGACGGTGCGTCCGATGGCGACGAATCGATGCTCCTTTTTCTTCTGCTGTTTGAGCCAGATGAAACCAGAGGTCCGATTGTAGCCGACCTCGAGGATGTCGTTTAAGGGGAGAAGTCCTCGGGGAAGAAAGAATTGATCGAGAAGTTCTTGAGATTTTTGCTTGCAGATAGCGTCGCCATGGTAGATCTCGGCGTCTGCTCTGTGGATCTCAAGTTGCGTCGACATTTTTCCGGGGTCTTGATTTGGTAA

mRNA sequence

ATGGAAAAGACAACGTTAAGAAATTCACATAAACGCAGAGACCGGGAAAGACTTGGAAATTCCAGTCAGAGTACCAAACGTGATCCTACTCGTGTTGTGTACATCAATATAAATATCGGAAACGGTGATCGAAAAGAAGAACTCCTTGCTCTTAACTCCGGTGAGGCGGCGGAGGCGGCGCTCCTCGATAAAGGCGGTAACCTCGGTGTCGTACAAGACGGTGCGTCCGATGGCGACGAATCGATGCTCCTTTTTCTTCTGCTGTTTGAGCCAGATGAAACCAGAGATAGCGTCGCCATGGTAGATCTCGGCGTCTGCTCTGTGGATCTCAAGTTGCGTCGACATTTTTCCGGGGTCTTGATTTGGTAA

Coding sequence (CDS)

ATGGAAAAGACAACGTTAAGAAATTCACATAAACGCAGAGACCGGGAAAGACTTGGAAATTCCAGTCAGAGTACCAAACGTGATCCTACTCGTGTTGTGTACATCAATATAAATATCGGAAACGGTGATCGAAAAGAAGAACTCCTTGCTCTTAACTCCGGTGAGGCGGCGGAGGCGGCGCTCCTCGATAAAGGCGGTAACCTCGGTGTCGTACAAGACGGTGCGTCCGATGGCGACGAATCGATGCTCCTTTTTCTTCTGCTGTTTGAGCCAGATGAAACCAGAGATAGCGTCGCCATGGTAGATCTCGGCGTCTGCTCTGTGGATCTCAAGTTGCGTCGACATTTTTCCGGGGTCTTGATTTGGTAA

Protein sequence

MEKTTLRNSHKRRDRERLGNSSQSTKRDPTRVVYININIGNGDRKEELLALNSGEAAEAALLDKGGNLGVVQDGASDGDESMLLFLLLFEPDETRDSVAMVDLGVCSVDLKLRRHFSGVLIW
Homology
[Close]
BLAST of CmaCh07G001080 vs. TrEMBL
Match: A0A0A0KKM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523365 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.6e-19
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 1 

Query: 9   SHKRRDRERLGNSSQSTKRDPTRVVYININIGNGDRKEELLALNSGEAAEAALLDKGGNL 68
           + KRR+RE LGNSS+ST+ D TRV+ +NIN  NG+ KE+LLALNS E AEA+LLD+G +L
Sbjct: 32  NQKRRNREGLGNSSRSTEGDLTRVLLVNINFRNGNPKEKLLALNSSETAEASLLDEGRDL 91

Query: 69  GVVQDGASDGDESMLLFLLLFEPDET 95
            VVQD AS+G E +L FLLL EP+ET
Sbjct: 92  RVVQDSASNGGEPVLFFLLLLEPNET 117

[Close]
BLAST of CmaCh07G001080 vs. NCBI nr
Match: gi|700194190|gb|KGN49394.1| (hypothetical protein Csa_6G523365 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 9.5e-19
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 1 

Query: 9   SHKRRDRERLGNSSQSTKRDPTRVVYININIGNGDRKEELLALNSGEAAEAALLDKGGNL 68
           + KRR+RE LGNSS+ST+ D TRV+ +NIN  NG+ KE+LLALNS E AEA+LLD+G +L
Sbjct: 32  NQKRRNREGLGNSSRSTEGDLTRVLLVNINFRNGNPKEKLLALNSSETAEASLLDEGRDL 91

Query: 69  GVVQDGASDGDESMLLFLLLFEPDET 95
            VVQD AS+G E +L FLLL EP+ET
Sbjct: 92  RVVQDSASNGGEPVLFFLLLLEPNET 117

The following BLAST results are available for this feature:
BLAST of CmaCh07G001080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh07G001080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKM9_CUCSA6.6e-1963.95Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523365 PE=4 SV=1[more]
BLAST of CmaCh07G001080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh07G001080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194190|gb|KGN49394.1|9.5e-1963.95hypothetical protein Csa_6G523365 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G001080.1CmaCh07G001080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G001080Cucumber (Chinese Long) v3cmacucB1003
CmaCh07G001080Cucumber (Chinese Long) v3cmacucB1035
CmaCh07G001080Watermelon (97103) v2cmawmbB875
CmaCh07G001080Watermelon (97103) v2cmawmbB887
CmaCh07G001080Wax gourdcmawgoB1069
CmaCh07G001080Wax gourdcmawgoB1080
CmaCh07G001080Cucurbita maxima (Rimu)cmacmaB238
CmaCh07G001080Cucurbita maxima (Rimu)cmacmaB414
CmaCh07G001080Cucurbita maxima (Rimu)cmacmaB528
CmaCh07G001080Cucumber (Gy14) v1cgycmaB0048
CmaCh07G001080Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G001080Cucurbita moschata (Rifu)cmacmoB847
CmaCh07G001080Cucurbita moschata (Rifu)cmacmoB850
CmaCh07G001080Cucurbita moschata (Rifu)cmacmoB861
CmaCh07G001080Wild cucumber (PI 183967)cmacpiB864
CmaCh07G001080Wild cucumber (PI 183967)cmacpiB893
CmaCh07G001080Cucumber (Chinese Long) v2cmacuB847
CmaCh07G001080Cucumber (Chinese Long) v2cmacuB877
CmaCh07G001080Melon (DHL92) v3.5.1cmameB782
CmaCh07G001080Melon (DHL92) v3.5.1cmameB798
CmaCh07G001080Watermelon (Charleston Gray)cmawcgB754
CmaCh07G001080Watermelon (Charleston Gray)cmawcgB759
CmaCh07G001080Watermelon (97103) v1cmawmB826
CmaCh07G001080Watermelon (97103) v1cmawmB819
CmaCh07G001080Cucurbita pepo (Zucchini)cmacpeB858
CmaCh07G001080Cucurbita pepo (Zucchini)cmacpeB861
CmaCh07G001080Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G001080Cucurbita pepo (Zucchini)cmacpeB881
CmaCh07G001080Bottle gourd (USVL1VR-Ls)cmalsiB786
CmaCh07G001080Bottle gourd (USVL1VR-Ls)cmalsiB796
CmaCh07G001080Cucumber (Gy14) v2cgybcmaB141
CmaCh07G001080Cucumber (Gy14) v2cgybcmaB861
CmaCh07G001080Melon (DHL92) v3.6.1cmamedB883
CmaCh07G001080Melon (DHL92) v3.6.1cmamedB897
CmaCh07G001080Silver-seed gourdcarcmaB0415
CmaCh07G001080Silver-seed gourdcarcmaB0588
CmaCh07G001080Silver-seed gourdcarcmaB1024
CmaCh07G001080Silver-seed gourdcarcmaB1112