CmaCh06G015850 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G015850
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNucleic acid-binding protein, putative
LocationCma_Chr06 : 9897345 .. 9899985 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGTCGATTAGGTAATATGTGAATTTAGTTTTTGACCTTTCTTTAGTTTTACGATATATGAGGTGAGACCACTTGACTTTTAAACCAGTAGATCAAGATTGTATATTAATCAGTTGAGCTATGTCTGTTAATCTAATTTTGTCATGTCTTCTCTTAGTCTTACTAATCCCTTTGTTTCCTCTTTCCCTAGTGTTAAAGACGGGTTTAAATATCATCTTGGCTAGCAATATCCCAAAAAACAGCCCTATGATTGAGGTTTGATGACCCTCCCCCTCTCGGTTTTTCTAATACACAAATAATCAATGTGACGATTGATCTATAAAAGAAGAACTATGTCGGAAATATTAGAGCTCGTTTGATAATCATTTTGATTTTAGAAAACAAACTTATTTACCCCTAGTATGTTGTCTCGCGCTTTATTTTTTAATTTAAGTCGATTCTTATCGTTTATTTTTGTTTGGATCATTTTAGGTAGCGGCTGAAAAGATGTTAGTGCAAAAGCTGGCCAGTTTAGGGTTCATTAGACCAAAATTTGAAGGGAAGGGCCATCTAGATAATGGTATCCATGCTTAGTCTTCTTTGCAAGAACCTAAGAGACAGTTATTACTCTGATTAAGCTAGCTGATTCTTATAACTGAACGCTTGATGTTCCTCTTCTTACATTATGCTTATGGTTATGACCTCTCGTGTTAATCTCGAGCAGACTTCATTCATTCAGAGTCGGCCGAGGAAGACAATTAGAGTTTTAAGTTATTAAGTTTTCGATCTTTCGAGCTTGAACTTCAAGCTTGAATCATGACTTTAGAGGTGGACAACTGAACATACGAAATGTTTACTATCAAGGTACTCGATGGGATTCTCTTTTACTTTGTCTTCTTTAATGTTGACTAAGCCCTTCCTTCGTAGAATTGATGTTTCGTTATAAGATAATATAAATTGATAACGAGATGTTTTCTATTTTTCTATGGAAAAAGTATAAAAATAAATTTGTTGATGCAATATGACAAAATATTTGAAAGAGTAATAGGTAGGAACAAGATTAGGGTATTTGCAAATCTAACTCAGATTTTTGGAATTTGCAAATATGGTGAAGTTTTCCAATTTTAAATTACGTTTTTTTTCTTCTTATATTCCGATTCAACCTTTTTTAACAAATTTTAAAATTACATAAATTATACTTAAAATATATATTTTTTTATTCAATAATATTTTAAGTCTAAGAATTCCGTTATAATATTAAAATGACTTTTTTAGAAATTTTGTTGGTTAAAATATTATATTATATTTTTATTTATGAAATATTATTGAAATGTTTTAATTTTTTTTATAAATAAATATATTGAAAATTGAAAATTCTTTGTGAATAATTTAAAAATATATATATAAAAAAAAAACTCTAAAAACCCTTCCCCAATTCTAACCCAAAATAATAATATAATAATATAATAATTGGTGGCGTGAAGCTGTAGATAAGGATAGAGATGAGTTTCCTACCAGCCGGGTAGACATATATAACTTTATGGCTAGCCTTATAGAGCTTTATAGGCTAAGATCAAGGTCAATATGGCTCAGGTTCCACCCTGTGATCTTGTTTAAGTTTTCACAAGCCGTTCAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTACATTTGTTATTTTGTTTAAATAAATTTAGAAATTTTATGGATTATGAACTAAACCAGACCATTGTAGTTCAAAATTTTGTTCATTTGATTCATTCGATTTGAGGCCGTCTTTATCCTAAAATCTCAATTTCTTTAAACTCAAATCAGATGTGGATAATATTTAAAGGGTCCCGTTCCGTGAAAAGGGAACATAACAGCGTCTGTATTGTGTTCAGTTCTGCATCTTCGAAATCCAGAAGCCATTAATGCACTTTTTACAGCGTACGGATCCATCAGTTCTTCGAAATCCCGACGCCATTAACTCTCTGTCCCTCTCCCACTCCTCTCCCTCCATTTTTCTCTACTAACCCAGTTCTCCATTTCCCACTTGGAACCCCACAATTCCCCCCTGTGCATCGTTTTCCTTCTCACCGCCGAGTAGGGTTTACTGCAACTGTTGAGCGTTTTTCTCCTTCCTATTCCCGCCTACGCCTCGATCCCACGGTTTCGGTAAGTTCCTCTTCTTCACCCTCTCGTATCTCATCGTGTTCTGCTCTGTGATGCGTTTTCTTGGCGTCCCGCGTCTTGTCTTGTGTTTCAATTGAATTTCTGTCTCTTGTTTGTGCTGCATTCTTTCAGATCTATTCGAATTTTGGGTTTTATTTATATTTCCCACTTGGATCAGTTTTTCATCATAAACTAGTCATTGTCCGAATTTGGTTCTTGTACGCGATTCTTTCTTATTGGCGTGGTTGATTGTTGATTTTTTATGATTTTGGCAAATCGTGTTACTTCTCAACTCTCAGTGCCTTTTTGGATGGTTTGAATGTAATGTATCTGGGATTTGCTTGTTGGAATAGTTAAATCCTATTGTATGAATCTGGGCTTCGTCTTCTCAGGCGCTATCCTGCATGTATATACAGTACAGTAGGCATTGCACCCGTCGGTGGAACCGATAA

mRNA sequence

ATGGCTCGTCGATTAGTGTTAAAGACGGGTTTAAATATCATCTTGGCTAGCAATATCCCAAAAAACAGCCCTATGATTGAGGTAGCGGCTGAAAAGATGTTAGTGCAAAAGCTGGCCAGTTTAGGGTTCATTAGACCAAAATTTGAAGGGAAGGGCCATCTAGATAATGGTATCCATGCTTACGTACGGATCCATCAGTTCTTCGAAATCCCGACGCCATTAACTCTCTGTCCCTCTCCCACTCCTCTCCCTCCATTTTTCTCTACTAACCCAGTTCTCCATTTCCCACTTGGAACCCCACAATTCCCCCCTGTGCATCGTTTTCCTTCTCACCGCCGAGTAGGGTTTACTGCAACTGTTGAGCGTTTTTCTCCTTCCTATTCCCGCCTACGCCTCGATCCCACGGTTTCGGCGCTATCCTGCATGTATATACAGTACAGTAGGCATTGCACCCGTCGGTGGAACCGATAA

Coding sequence (CDS)

ATGGCTCGTCGATTAGTGTTAAAGACGGGTTTAAATATCATCTTGGCTAGCAATATCCCAAAAAACAGCCCTATGATTGAGGTAGCGGCTGAAAAGATGTTAGTGCAAAAGCTGGCCAGTTTAGGGTTCATTAGACCAAAATTTGAAGGGAAGGGCCATCTAGATAATGGTATCCATGCTTACGTACGGATCCATCAGTTCTTCGAAATCCCGACGCCATTAACTCTCTGTCCCTCTCCCACTCCTCTCCCTCCATTTTTCTCTACTAACCCAGTTCTCCATTTCCCACTTGGAACCCCACAATTCCCCCCTGTGCATCGTTTTCCTTCTCACCGCCGAGTAGGGTTTACTGCAACTGTTGAGCGTTTTTCTCCTTCCTATTCCCGCCTACGCCTCGATCCCACGGTTTCGGCGCTATCCTGCATGTATATACAGTACAGTAGGCATTGCACCCGTCGGTGGAACCGATAA

Protein sequence

MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPKFEGKGHLDNGIHAYVRIHQFFEIPTPLTLCPSPTPLPPFFSTNPVLHFPLGTPQFPPVHRFPSHRRVGFTATVERFSPSYSRLRLDPTVSALSCMYIQYSRHCTRRWNR
Homology
[Close]
BLAST of CmaCh06G015850 vs. TrEMBL
Match: A0A0A0KZU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G304800 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.3e-14
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPKFEG 51
           MARRLVLKTGLNIILASNIPKNSP+IEVAAEK+LVQKL +LG++RPK EG
Sbjct: 97  MARRLVLKTGLNIILASNIPKNSPIIEVAAEKVLVQKLVTLGYVRPKPEG 146

[Close]
BLAST of CmaCh06G015850 vs. TrEMBL
Match: I1ITU5_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_4g40900 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-11
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPK 48
           MARRLVLKTGLNI+LA NIPK+SPM+E AAE+ LV+KL SLG+IRPK
Sbjct: 105 MARRLVLKTGLNIVLACNIPKDSPMLEAAAERKLVEKLRSLGYIRPK 151

[Close]
BLAST of CmaCh06G015850 vs. TrEMBL
Match: A0A072V7V5_MEDTR (Nucleic acid-binding protein, putative OS=Medicago truncatula GN=MTR_2g046100 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.5e-11
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPKFEG 51
           +ARRLVLKTGLNII+A NIPKNSPM+E+ AEK+L+QKL SLG+ + + EG
Sbjct: 93  IARRLVLKTGLNIIMACNIPKNSPMVEIEAEKILIQKLISLGYTKSRLEG 142

[Close]
BLAST of CmaCh06G015850 vs. TrEMBL
Match: A0A0E0MKE1_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-10
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPK 48
           MARRLVLKTGLNI+LA NIPK+SPM+E AAE+ L++KL  LG++RPK
Sbjct: 108 MARRLVLKTGLNIVLACNIPKDSPMLEAAAERKLIEKLRGLGYVRPK 154

[Close]
BLAST of CmaCh06G015850 vs. TrEMBL
Match: F2D314_HORVD (Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-10
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPK 48
           MARRLVLKTGLNIILA NIPK+SPM+E AAE+ LV+KL SLG+IR K
Sbjct: 106 MARRLVLKTGLNIILACNIPKDSPMLEAAAERKLVEKLRSLGYIRSK 152

[Close]
BLAST of CmaCh06G015850 vs. TAIR10
Match: AT1G48170.1 (AT1G48170.1 unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 5.8e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPK 48
           +ARRLVLKTGLNIILA NIPKN+P++E  AEK+L++KL  LG+   K
Sbjct: 102 IARRLVLKTGLNIILACNIPKNNPLLEAKAEKVLIRKLIDLGYTMSK 148

[Close]
BLAST of CmaCh06G015850 vs. NCBI nr
Match: gi|659069230|ref|XP_008448802.1| (PREDICTED: uncharacterized protein LOC103490859 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPKFEG 51
           MARRLVLKTGLNIILASNIPKNSPMIEVAAEK+LVQKL +LG+IRPK EG
Sbjct: 99  MARRLVLKTGLNIILASNIPKNSPMIEVAAEKVLVQKLVTLGYIRPKSEG 148

[Close]
BLAST of CmaCh06G015850 vs. NCBI nr
Match: gi|449460343|ref|XP_004147905.1| (PREDICTED: proteasome assembly chaperone 4 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 9.0e-14
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPKFEG 51
           MARRLVLKTGLNIILASNIPKNSP+IEVAAEK+LVQKL +LG++RPK EG
Sbjct: 97  MARRLVLKTGLNIILASNIPKNSPIIEVAAEKVLVQKLVTLGYVRPKPEG 146

[Close]
BLAST of CmaCh06G015850 vs. NCBI nr
Match: gi|645233690|ref|XP_008223465.1| (PREDICTED: proteasome assembly chaperone 4 [Prunus mume])

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPKFEG 51
           +ARRLVLKTGLNIILA NIPKNSPMIE  AEK+LVQKL SLG+ RPK EG
Sbjct: 112 IARRLVLKTGLNIILACNIPKNSPMIEADAEKLLVQKLISLGYTRPKAEG 161

[Close]
BLAST of CmaCh06G015850 vs. NCBI nr
Match: gi|470122119|ref|XP_004297097.1| (PREDICTED: proteasome assembly chaperone 4 [Fragaria vesca subsp. vesca])

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 37/50 (74.00%), Postives = 45/50 (90.00%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPKFEG 51
           +ARRLV +TGLNIILA NIPKN+PM+E+ AEK+LVQKL SLG+IRPK +G
Sbjct: 106 IARRLVSRTGLNIILACNIPKNNPMVELDAEKLLVQKLLSLGYIRPKSQG 155

[Close]
BLAST of CmaCh06G015850 vs. NCBI nr
Match: gi|357160618|ref|XP_003578821.1| (PREDICTED: proteasome assembly chaperone 4 [Brachypodium distachyon])

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 1   MARRLVLKTGLNIILASNIPKNSPMIEVAAEKMLVQKLASLGFIRPK 48
           MARRLVLKTGLNI+LA NIPK+SPM+E AAE+ LV+KL SLG+IRPK
Sbjct: 105 MARRLVLKTGLNIVLACNIPKDSPMLEAAAERKLVEKLRSLGYIRPK 151

The following BLAST results are available for this feature:
BLAST of CmaCh06G015850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh06G015850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZU0_CUCSA6.3e-1486.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G304800 PE=4 SV=1[more]
I1ITU5_BRADI5.0e-1178.72Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_4g40900 PE=4 SV=1[more]
A0A072V7V5_MEDTR8.5e-1170.00Nucleic acid-binding protein, putative OS=Medicago truncatula GN=MTR_2g046100 PE... [more]
A0A0E0MKE1_ORYPU2.5e-1072.34Uncharacterized protein OS=Oryza punctata PE=4 SV=1[more]
F2D314_HORVD3.2e-1078.72Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1[more]
BLAST of CmaCh06G015850 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G48170.15.8e-1165.96 unknown protein[more]
BLAST of CmaCh06G015850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069230|ref|XP_008448802.1|1.4e-1490.00PREDICTED: uncharacterized protein LOC103490859 [Cucumis melo][more]
gi|449460343|ref|XP_004147905.1|9.0e-1486.00PREDICTED: proteasome assembly chaperone 4 [Cucumis sativus][more]
gi|645233690|ref|XP_008223465.1|3.8e-1282.00PREDICTED: proteasome assembly chaperone 4 [Prunus mume][more]
gi|470122119|ref|XP_004297097.1|5.4e-1174.00PREDICTED: proteasome assembly chaperone 4 [Fragaria vesca subsp. vesca][more]
gi|357160618|ref|XP_003578821.1|7.1e-1178.72PREDICTED: proteasome assembly chaperone 4 [Brachypodium distachyon][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G015850.1CmaCh06G015850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33559FAMILY NOT NAMEDcoord: 1..54
score: 2.2
NoneNo IPR availablePANTHERPTHR33559:SF1PROTEASOME ASSEMBLY CHAPERONE 4coord: 1..54
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh06G015850CmoCh14G015970Cucurbita moschata (Rifu)cmacmoB797
CmaCh06G015850Cp4.1LG03g12110Cucurbita pepo (Zucchini)cmacpeB837
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G015850Wax gourdcmawgoB1001
CmaCh06G015850Wax gourdcmawgoB1006
CmaCh06G015850Cucurbita maxima (Rimu)cmacmaB284
CmaCh06G015850Cucurbita maxima (Rimu)cmacmaB369
CmaCh06G015850Cucumber (Gy14) v1cgycmaB0727
CmaCh06G015850Cucurbita moschata (Rifu)cmacmoB812
CmaCh06G015850Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G015850Wild cucumber (PI 183967)cmacpiB826
CmaCh06G015850Cucumber (Chinese Long) v2cmacuB814
CmaCh06G015850Melon (DHL92) v3.5.1cmameB747
CmaCh06G015850Melon (DHL92) v3.5.1cmameB763
CmaCh06G015850Watermelon (Charleston Gray)cmawcgB737
CmaCh06G015850Watermelon (Charleston Gray)cmawcgB745
CmaCh06G015850Watermelon (97103) v1cmawmB798
CmaCh06G015850Cucurbita pepo (Zucchini)cmacpeB853
CmaCh06G015850Bottle gourd (USVL1VR-Ls)cmalsiB765
CmaCh06G015850Cucumber (Gy14) v2cgybcmaB427
CmaCh06G015850Melon (DHL92) v3.6.1cmamedB846
CmaCh06G015850Melon (DHL92) v3.6.1cmamedB863
CmaCh06G015850Silver-seed gourdcarcmaB0095
CmaCh06G015850Silver-seed gourdcarcmaB0393
CmaCh06G015850Silver-seed gourdcarcmaB1036
CmaCh06G015850Cucumber (Chinese Long) v3cmacucB0965
CmaCh06G015850Watermelon (97103) v2cmawmbB856