CmaCh06G015730 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G015730
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr06 : 9842203 .. 9845890 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACGCGCCAAGTTTCCGTTGGCCGGGATTCAGTCTGTCACTGCGTTCGGCGTCATTCAGTTGGCCGGATTTCAGTTTCTCAAACATCGGCATCGAGTGGAACTCTCCGAACATCAGGTGGTTTGATTTTTCCATTCTCGATGATCTATTATGGACCTTCATCGCTCTTCTCGAATCCTTAGTTCTCGTTACAATGTTGTCCTGCTTCTTCTTGTGCTGTGGATTTACCCTCTGATTCGCTCAATCACCGATTGAGTATGTTGTATATATTTCTTTAATTTGGTTGCTTCTATTTCGAAATGTTAGCAATTATATGCTCTGTAGTTTTGAATTTAAATAGTTTACTTGCTCCTGATGATTGCGTTCTTCGTCTTCTCGAATTGACGTCAGGATCCCTAACTAGAAAGCCTGCTTTAATTGAATGCTAATTAGAAGTCTAGGTCTCATCACTGAATCGATTTGAACAACGTTGAAAACTATTAGAGAATTCTTATGAACCTCCCATTCCGAGAAGAGAAAGGCGAATTTCCGTAGGAAATTATCATCATCTTCAGTGTTTTTGTGGTGAATCATTGTGTTCATTCAATTATGGCGAGTTTAGCTTCTTTCTTTTGACTCATTTAGCTTGTGGATTAATCATCTTTCCGTTACTCGTGGAGCTTCAGGAAGATGATGATTTGTGAGACTTCCTAGTTTTCTCTTTTTGATCTGCTTTTCATCAGTGTTTCTGGTAGATGTTCGAGAATTTATAAAAAAATGTGTCCGACCGTTGGTATGGTTAAATTTATTAGAATATACTAGTTTAAGCTTTTGAATTGATTGATGATTTAACAAGCTATTAGAGTAAGACCTTGTGTGCATAGACTCAAAGCCGGATGAGATAGTTTGAGAAACAACCCTAGGGCAAACCGAAGACTTCACAAATGTGTCAAGAGTGTCAGTTTGAGTAGGAAATTTGTGTTGTTAGATACTCTTTAGGACTCAAAAAGTGTGATCTGTTGGCATGTGGTTAAGGGGAGTCTTTCTCGTCAACCAACAAGAGCCAAGCTCATTTGTTGAGAGCTTGAGGATTCGTTGGTGGGAAAGAGATGAACATAAGGTGTAGATAGGGTGCTTTTGGAATAGTTGTTACCATTAGAAGAATAAGGTTAATGGTTGCAAAAGCAGCGAATCCAAGATTAGTGTGATATGCCTCCATCATCAAGTGCAAGTGCAAGTTTCGCAAAAAGGAAGTCTATTTGGGTGGATAATGTGGCTAGGTGAAGAGCCTGTTTGGTTGAGTTGAGTTGAGTGGTAAAGAGTCGGAGAGAACGAGTTGCTTGTCTTGTGAGGGTGCTCTAGAATGTCTTCCTTCAGCTATTCCACATGCCTAAGTGGGTGGCTTCACAAAGAGTTGTCTAAACCAACGTTTGTGGCTTCACAAAGCTTATAGCAATTATAAACATTTTTGTTCTTTGATGTGCATGTGTATCAGACAAAAAATACCTCAAAATGTACTATTAGAAGTGTTAGACTCTTCACCACCCTCGGACCTTGTGACTCAAGTGAGTCATCCTATGACACGTGTGTGTCAAGATGCTATGAACATTGCAAGATGAGTGTCTTCGCATCTCCCCATGAGTTGGAGGTCGTGTTATGGGATCGGACTTCAATATTGTGTCATAATGACTTGGCATGAACACTTAAGGGTTCATGCTCAATAGAACTCAAATAGATGAATGTTCGGAAGGTTCCAAATTTGAAGTCAACTCATGGATTGATTGATGATGAGTGTCCAAGTGAACAACGAAGGTTGATGACATCCTAATACTTGGAGTGACATCTTGATTGATGTATCAGTGGGACTTGAGAGATTTCTATTGTCTTGCTCCTAATAAGCATTATAATGCCCCAGTAAGTCTTGATAAGTGCTGAAATCCCGTGGTATGCTTGGATTGATTGTTTTGTGACACCATCTTGATTCAACCAAGGGTTTGAACACATTCAGGTGAAGTTATGAATCAATGCACAAGTGTGTGGGCTGTGTTGTTGAGAACGATGGATGAAAAAGAGTCATCAAGAGTGGAATCTAAAATTTTGTTTGGAGAAGAAAATATCTAAAAGTAATGACAAGATATTGGTGGGGCCAAAATAATTGATTTGGAAGGTATGGAACTCAAGAATTAAAATAGATAGATTTACCTTTATCTGGAACCATGTATTTGAAGGGATTCAAGCAAGAAGCTGCTAGTGATTGGTTCGAGAGGGTTGGAGAGGCGAGAGCAGAGGATGTGATTGTTGAGGATTATTGGGAGTGAGTCCCACCTTGGCTAATTTAGGGAATAATCATAGATTTATAAGTGAGGAATACTATCTCTTATGAGGCATTTTAGGGAATCGCAAAACAAAGCCATGAGAGTTTATACTCAAAGTCGATAATATCATATCATTGTGGAGAGTTGTGATTCCTAATAGTAGAGAGGGAGTGGCGATGAGTTCATCGAATGGTTGTGACTGCGGCGTGCGTCAGGGTGGGGTGCGGTAGTTTATTGAACTAAAGGTAAAAAGATAAGTCTCTTCTAAGCTGAGTGCTTTTGTAGTTTAGCTATTTTTAAGCCAAACTCCATAGTCCATCTTAAAGGAAAACAAGACTTATAGAAGAAACTCTAGCCGCCCAAAAACATAACCTAAATGATGTCTTGTCTTGAAGTTGGATATTGACTCCCTAAATTGAAAGGAAAAGAATGTAATTCTTAATTACGATTAAGATTCAAACTCCTCATTGAAGTTGAAGATATCTTTAAAACATACCGAATATAAATGAAGTTGTATTTGAAGTAGTTTTGAAACTCAAGCTACATGAATGAACTTAGACTACTCTCGATTTAGAAGTTTGAGATTATTTTTTATTTCATTTAATGAAGTTTCTATTTAACTTCTCTAGCGGAGTTTTGAGTTCTCTAATGCAACTTGACCAAGACATTGATTCAATTTTGAATTCAATGTTTTATTTTGTTAAATTCATATGTTGGTTCAAAATGAGTTAGGGCCAAAAATTGATGTGGACTGATGCATCTACATTCTACCTAGAAAATATATCTATGTTTGAGTTTTATGCCTTAATTATATTGTAATGATTGAATTTCCAATGTTTCTTTTTAGGTAAACATTATTACTTTCAAATTTTATAGATTTAAAATTTTGGTTAATTAGTAATAATTTTATTGTTTGAGTGCTTTTATTGTAACAAATTTTTATATCTTAGGAGAGGTTTATGCACTTTACAATTGGTTATTGATAATGCTATAATATTAGGGTTTAATAAATTCATGATGGTAACATTTTCAAGAATTTATGTAAATTTTTTCCAAACATTATTATTTATTTTATTCCATGTATTGATATTCTAACACATTTTACTGGATAATTTTAAAGATATTTATTTTTGAAATTCAAGGGTAATTAATCCCTCCTAATCGAGTCATCGACTACATATTCAACTTGACGGATTACAAATTTCAAATTTTTTGACCTTCTCAAACACGAGATTTACATTGAGCTAAAAATTCAACAATTATTACTAATTTCATTCCACAATAATAAGCCCATTTTTGTAGTTTTGACATTCCTTTATTTATAGGCAAGGAAGGATAAAGGAGTTATTGCTGAATGCTTGGTTGGTCATGAAATGTCCACAATTTTCTAA

mRNA sequence

ATGGTACGCGCCAAGTTTCCGTTGGCCGGGATTCAGTCTGTCACTGCGTTCGGCGTCATTCAGTTGGCCGGATTTCAGTTTCTCAAACATCGGCATCGAGTGGAACTCTCCGAACATCAGGCAAGGAAGGATAAAGGAGTTATTGCTGAATGCTTGGTTGGTCATGAAATGTCCACAATTTTCTAA

Coding sequence (CDS)

ATGGTACGCGCCAAGTTTCCGTTGGCCGGGATTCAGTCTGTCACTGCGTTCGGCGTCATTCAGTTGGCCGGATTTCAGTTTCTCAAACATCGGCATCGAGTGGAACTCTCCGAACATCAGGCAAGGAAGGATAAAGGAGTTATTGCTGAATGCTTGGTTGGTCATGAAATGTCCACAATTTTCTAA

Protein sequence

MVRAKFPLAGIQSVTAFGVIQLAGFQFLKHRHRVELSEHQARKDKGVIAECLVGHEMSTIF
Homology
[Close]
BLAST of CmaCh06G015730 vs. TrEMBL
Match: A0A0A0LAS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G168920 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-07
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 

Query: 1  MVRAKFPLAGIQSVTAFGVIQLAGFQFLKHRHRVELSEHQARKDKGVIAECLV 54
          MVR KFP+AGI+ V A  V+QLAGFQFLK +HRVELS+HQ       ++ C V
Sbjct: 1  MVRPKFPVAGIRFVAAACVVQLAGFQFLKLQHRVELSQHQFFLQCCAVSSCAV 53

[Close]
BLAST of CmaCh06G015730 vs. NCBI nr
Match: gi|700202048|gb|KGN57181.1| (hypothetical protein Csa_3G168920 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-07
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 

Query: 1  MVRAKFPLAGIQSVTAFGVIQLAGFQFLKHRHRVELSEHQARKDKGVIAECLV 54
          MVR KFP+AGI+ V A  V+QLAGFQFLK +HRVELS+HQ       ++ C V
Sbjct: 1  MVRPKFPVAGIRFVAAACVVQLAGFQFLKLQHRVELSQHQFFLQCCAVSSCAV 53

The following BLAST results are available for this feature:
BLAST of CmaCh06G015730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh06G015730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAS1_CUCSA4.9e-0758.49Uncharacterized protein OS=Cucumis sativus GN=Csa_3G168920 PE=4 SV=1[more]
BLAST of CmaCh06G015730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh06G015730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202048|gb|KGN57181.1|7.1e-0758.49hypothetical protein Csa_3G168920 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G015730.1CmaCh06G015730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh06G015730CmoCh06G015670Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G015730CsaV3_3G015310Cucumber (Chinese Long) v3cmacucB0965
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G015730Wax gourdcmawgoB1001
CmaCh06G015730Wax gourdcmawgoB1006
CmaCh06G015730Cucurbita maxima (Rimu)cmacmaB284
CmaCh06G015730Cucurbita maxima (Rimu)cmacmaB369
CmaCh06G015730Cucurbita maxima (Rimu)cmacmaB554
CmaCh06G015730Cucumber (Gy14) v1cgycmaB0727
CmaCh06G015730Cucurbita moschata (Rifu)cmacmoB812
CmaCh06G015730Cucurbita moschata (Rifu)cmacmoB797
CmaCh06G015730Cucurbita moschata (Rifu)cmacmoB840
CmaCh06G015730Wild cucumber (PI 183967)cmacpiB826
CmaCh06G015730Cucumber (Chinese Long) v2cmacuB814
CmaCh06G015730Melon (DHL92) v3.5.1cmameB747
CmaCh06G015730Melon (DHL92) v3.5.1cmameB763
CmaCh06G015730Watermelon (Charleston Gray)cmawcgB737
CmaCh06G015730Watermelon (Charleston Gray)cmawcgB745
CmaCh06G015730Watermelon (97103) v1cmawmB798
CmaCh06G015730Watermelon (97103) v1cmawmB811
CmaCh06G015730Cucurbita pepo (Zucchini)cmacpeB837
CmaCh06G015730Cucurbita pepo (Zucchini)cmacpeB812
CmaCh06G015730Cucurbita pepo (Zucchini)cmacpeB853
CmaCh06G015730Bottle gourd (USVL1VR-Ls)cmalsiB741
CmaCh06G015730Bottle gourd (USVL1VR-Ls)cmalsiB765
CmaCh06G015730Cucumber (Gy14) v2cgybcmaB427
CmaCh06G015730Melon (DHL92) v3.6.1cmamedB846
CmaCh06G015730Melon (DHL92) v3.6.1cmamedB863
CmaCh06G015730Silver-seed gourdcarcmaB0095
CmaCh06G015730Silver-seed gourdcarcmaB0393
CmaCh06G015730Silver-seed gourdcarcmaB1036
CmaCh06G015730Watermelon (97103) v2cmawmbB856
CmaCh06G015730Watermelon (97103) v2cmawmbB865