CmaCh06G015120 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G015120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Gag-pol polyprotein, putative
Location	Cma_Chr06 : 9571345 .. 9573528 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCATCCAACGGAAAAACATCTCAATGCAGCAAGAAGGATACTTCGTTATGTGAGAGGAACCTCTGATTTGGGGGTATTCTACAAAAAAGGAGATGATCCGAAGATAGTTGGCTATACAGACAGCGACTATGCAGGTGATATAGACGATCGTAAAAGTACTTCAGGAAGTATTTTCTTGATGAGTTCAGGAGCTATTTGCTGGTCTTCAAAGAAGCAACCTATTGTAACACTCTCAACGACAGAAGCAGAATTTGTGGCAGCAGCAGCATGCTCGTGCCAAGCAATTTGGTTAAGAAAAATGCTTGAAATTCTTAATCAGAAGCAACCAAGTACGACGGTTATATATTGTGATAATATGTCAACTATTAAGTTGTCTAAAAATCCTGTGTTGCATGGAAGGAGCAAGCACATCGATGTTCGATTTCATTTCTTGCGTGATTTGTGTAAAGAAGGCATTATTGAACTCAACTTTTGCCGAAGTGATGAACAAATCGCAGACCTATTCACAAAGCCCTTGAAACAACCATTGTTCGAGAAGCTCAGAAGAAAAAATGGGGATATGCAGAATCCAAGATGTATATCAAGAAGATGAAATGAAGTCCTAAACTGATTTAGGCAGAATTCAGTTTAAGGGAGGGTGTTGAAACTAATACTAGCTAATAATAGAATAGAATTTGAATTGGTTTCAAATTCAAATTCATCCACAAAAATCTCTCAACCGACTACGGAATCACCCTAGAAAATCTCAACCAACTCTGGAATCCCCTATAAAAGGACCTCCCTCCCCATCATTCAAATCACTCCTCCTCTCAATCTCAATTCAGTTTTCTGTTGTCACTAACACCAGTTGCTCCCGTATCTCCAAGAATGTTGCAGTGCATTGTCTTGTTCTTGACTATTGAGCTTTATTTGGTCCTATGTCCATTTCTTGCAGAGATTGTCCTACTTGAGCTTTCACTTTTGGGCTTCCCTTCTAGGTTTTAAAACGCATATGTTAGGAAAATGTTTCTACGCTCTTATAAAGAATGCTTCCTTCCCCTTTCCAAATAAAGAATGCTTCCTTCCCCTTTCCAACTGATGTGGGTTCTCACAATCCACCTCTTATGGGGGCCCAGCGTCCTTGGTGGCACACTACTCGGTGCTTGGCTCTGATACCATTTGTAATAGCTCAATCCCACCGCTAACAAATATTATCCTTTTGGGCTTTCCCTTTTGCGCTTTCCCTCAAGGTTTTAAACCGGGTATGATAGGGAGAAGTTTCCACACCCTTATAAGCAATGTTTTGTCCCGCTCTCCAACCGATATGGGATCTCACACTATTTGTGTTTTTTCTTTCCCTGAATTAAATTAATATCTCAGACGATTCTATTTACTGCTATATGTTTCAGGTTCCTATGTGACACATGAAACCAACCATTTTGTTTACTTTTACCTGGATCAAAAAGCAGTCTTACTCTTCAAATCTGGTTGATGACTGTTCTTCCCTTGGCAAAGATGCCACCAACTACTTTGGCAAGCCTGCAATCACAATGCTACGATAAGTTCTTGTATGTATAATCTATGTAAATCACTTGGTGTAGCATTTTTCAAATTATAACTAAATATATCACTGAGGGAGTAGATTAAATGGAATTCAATCTGCCATTACATAAATCTCTCAAAGGGTTTCCTTGTTGCTCTCATTAAAACAGAAGGTTGCAGTACAAAAAGGGGAGGGATGCTTGTTTTTAATGGGTTTTTGGTGGTTAAACTTTCAATTATTGGCTCTGAAATAAGCCTTGGAAGCCGATGATCTATAGAAGAGTAAATGCACCATTTTAGTACAAGATAGGGCGTAGCAATAGCAAAATTTTTTTTTTTTTTTGTACTATTGCTAAAGAAAAGGAAGGACTTAAATTAAAAGCTCTCTCTTAAAATGAGATTCTAAAAGCAGATTTCTGTTGATTCATTACTAATATTACAATGTTTTGTTCTTACACAGCTTATCAGGCCTACCCTCAAAAACTTTCTTAGGCAGGGGATGAACTTTGGGGCCTGTTTGACTACTTTCTTAGTTGAATAAATGATGCAATTAATTAGTACACCACTTTTTTAATGGTATGTTATTGTCGACTCTGAACATAAGCTTTCATGGCTTTGTTTTGGACTTTTCTAAAAAACTTTATAACAATGGTAGAGG

mRNA sequence

ATGGAGCATCCAACGGAAAAACATCTCAATGCAGCAAGAAGGATACTTCGTTATGTGAGAGGAACCTCTGATTTGGGGGTATTCTACAAAAAAGGAGATGATCCGAAGATAGTTGGCTATACAGACAGCGACTATGCAGGTGATATAGACGATCGTAAAAGTACTTCAGGAAGTATTTTCTTGATGAGTTCAGGAGCTATTTGCTGGTCTTCAAAGAAGCAACCTATTGTAACACTCTCAACGACAGAAGCAGAATTTGTGGCAGCAGCAGCATGCTCGTGCCAAGCAATTTGGTTAAGAAAAATGCTTGAAATTCTTAATCAGAAGCAACCAAGTACGACGGTTATATATTGTGATAATATGTCAACTATTAAGTTGTCTAAAAATCCTGTGTTGCATGGAAGGAGCAAGCACATCGATGTTCGATTTCATTTCTTGCGTGATTTGTGTAAAGAAGGCATTATTGAACTCAACTTTTGCCGAAGTGATGAACAAATCGCAGACCTATTCACAAAGCCCTTGAAACAACCATTGTTCGAGAAGCTCAGAAGAAAAAATGGGGATATGCAGAATCCAAGATGTTCCTATGTGACACATGAAACCAACCATTTTGTTTACTTTTACCTGGATCAAAAAGCAGTCTTACTCTTCAAATCTGGTTGATGACTGTTCTTCCCTTGGCAAAGATGCCACCAACTACTTTGGCAAGCCTGCAATCACAATGCTACGATAAGTTCTTCTTATCAGGCCTACCCTCAAAAACTTTCTTAGGCAGGGGATGAACTTTGGGGCCTGTTTGACTACTTTCTTAGTTGAATAAATGATGCAATTAATTAGTACACCACTTTTTTAATGGTATGTTATTGTCGACTCTGAACATAAGCTTTCATGGCTTTGTTTTGGACTTTTCTAAAAAACTTTATAACAATGGTAGAGG

Coding sequence (CDS)

ATGGAGCATCCAACGGAAAAACATCTCAATGCAGCAAGAAGGATACTTCGTTATGTGAGAGGAACCTCTGATTTGGGGGTATTCTACAAAAAAGGAGATGATCCGAAGATAGTTGGCTATACAGACAGCGACTATGCAGGTGATATAGACGATCGTAAAAGTACTTCAGGAAGTATTTTCTTGATGAGTTCAGGAGCTATTTGCTGGTCTTCAAAGAAGCAACCTATTGTAACACTCTCAACGACAGAAGCAGAATTTGTGGCAGCAGCAGCATGCTCGTGCCAAGCAATTTGGTTAAGAAAAATGCTTGAAATTCTTAATCAGAAGCAACCAAGTACGACGGTTATATATTGTGATAATATGTCAACTATTAAGTTGTCTAAAAATCCTGTGTTGCATGGAAGGAGCAAGCACATCGATGTTCGATTTCATTTCTTGCGTGATTTGTGTAAAGAAGGCATTATTGAACTCAACTTTTGCCGAAGTGATGAACAAATCGCAGACCTATTCACAAAGCCCTTGAAACAACCATTGTTCGAGAAGCTCAGAAGAAAAAATGGGGATATGCAGAATCCAAGATGTTCCTATGTGACACATGAAACCAACCATTTTGTTTACTTTTACCTGGATCAAAAAGCAGTCTTACTCTTCAAATCTGGTTGA

Protein sequence

MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIFLMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDNMSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFEKLRRKNGDMQNPRCSYVTHETNHFVYFYLDQKAVLLFKSG

Homology

[Close]

BLAST of CmaCh06G015120 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.2e-37
Identity = 82/191 (42.93%), Postives = 122/191 (63.87%), Query Frame = 1


Query: 1    MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
            +E+P ++H  A + ILRY+RGT+   + +  G DP + GYTD+D AGDID+RKS++G +F
Sbjct: 1140 LENPGKEHWEAVKWILRYLRGTTGDCLCFG-GSDPILKGYTDADMAGDIDNRKSSTGYLF 1199

Query: 61   LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
              S GAI W SK Q  V LSTTEAE++AA     + IWL++ L+ L   Q    V+YCD+
Sbjct: 1200 TFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQ-KEYVVYCDS 1259

Query: 121  MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
             S I LSKN + H R+KHIDVR+H++R++  +  +++    ++E  AD+ TK + +  FE
Sbjct: 1260 QSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1319

Query: 181  KLRRKNGDMQN 192
              +   G   N
Sbjct: 1320 LCKELVGMHSN 1328

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BLAST of CmaCh06G015120 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 148.7 bits (374), Expect = 7.6e-35
Identity = 76/182 (41.76%), Postives = 117/182 (64.29%), Query Frame = 1


Query: 13   RRILRYVRGTSDLGVFYKKG--DDPKIVGYTDSDYAGDIDDRKSTSGSIFLMSS-GAICW 72
            +R+LRY++GT D+ + +KK    + KI+GY DSD+AG   DRKST+G +F M     ICW
Sbjct: 1222 KRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICW 1281

Query: 73   SSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDNMSTIKLSKN 132
            ++K+Q  V  S+TEAE++A      +A+WL+ +L  +N K  +   IY DN   I ++ N
Sbjct: 1282 NTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANN 1341

Query: 133  PVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFEKLRRKNGDM 192
            P  H R+KHID+++HF R+  +  +I L +  ++ Q+AD+FTKPL    F +LR K G +
Sbjct: 1342 PSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1401

[Close]

BLAST of CmaCh06G015120 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-11
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 1


Query: 1   MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
           M  PT    +  +R+LRYV+GT   G++  K     +  + DSD+AG    R+ST+G   
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIW 99
            +    I WS+K+QP V+ S+TE E+ A A  + +  W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh06G015120 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-07
Identity = 29/91 (31.87%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 1   MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
           +  P   HL +ARR+LRY+  T  + + Y+ G    +  Y D+ +    D   ST G + 
Sbjct: 212 LREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLPHSTGGYVT 271

Query: 61  LMSSGAICWSSKK-QPIVTLSTTEAEFVAAA 91
           L++   + WSSKK + ++ + +TEAE++ A+
Sbjct: 272 LLAGAPVTWSSKKLKGVIPVPSTEAEYITAS 302

[Close]

BLAST of CmaCh06G015120 vs. TrEMBL
Match: A5C546_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033739 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.7e-70
Identity = 131/183 (71.58%), Postives = 154/183 (84.15%), Query Frame = 1


Query: 1    MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
            MEHPTE HL AA+RILRYV+GT + GVFYKKG D K +GYTDSDYAGD DDRKSTSG +F
Sbjct: 895  MEHPTESHLLAAKRILRYVKGTVEFGVFYKKGGDDKFIGYTDSDYAGDHDDRKSTSGYVF 954

Query: 61   LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
             M+S A+ WSSKKQP+VTLSTTEAEF+AAA+ +CQA+WLR++L+ LNQ Q S TVIYCDN
Sbjct: 955  -MNSSAVSWSSKKQPVVTLSTTEAEFIAAASSACQAVWLRRILKSLNQVQTSPTVIYCDN 1014

Query: 121  MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
            +S IKLSKNPV+H RSKHIDVRFHFLRDL K+ ++EL  C + EQIAD+ TKPLK   F+
Sbjct: 1015 VSAIKLSKNPVMHSRSKHIDVRFHFLRDLIKDEVVELLQCSTHEQIADIMTKPLKLEAFQ 1074

Query: 181  KLR 184
            KLR
Sbjct: 1075 KLR 1076

[Close]

BLAST of CmaCh06G015120 vs. TrEMBL
Match: A0A151R6M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_040617 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.4e-67
Identity = 121/191 (63.35%), Postives = 155/191 (81.15%), Query Frame = 1


Query: 1   MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
           MEHP E H  AA+RILRY++GT +LG+FYK G + ++  YTDSDYAGD++DRKSTSG  F
Sbjct: 727 MEHPKESHFIAAKRILRYLQGTQNLGIFYKAGINEELFAYTDSDYAGDLEDRKSTSGYAF 786

Query: 61  LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
           L++ G I W SKKQP+V+LSTTEAEF+AAA C+CQ +WLR++LE L+  Q   TV++CDN
Sbjct: 787 LLAGGVISWVSKKQPVVSLSTTEAEFIAAALCACQCVWLRRILEHLDHYQVGATVMFCDN 846

Query: 121 MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
           +STIKLSKNPVLHGRSKHIDVRFHFLR+LC +G+IELNFC +  Q+AD+ TKPLK   F+
Sbjct: 847 VSTIKLSKNPVLHGRSKHIDVRFHFLRNLCNDGVIELNFCNTKNQLADIMTKPLKVEDFQ 906

Query: 181 KLRRKNGDMQN 192
           +LR   G +++
Sbjct: 907 RLRSALGMLED 917

[Close]

BLAST of CmaCh06G015120 vs. TrEMBL
Match: A5B902_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032980 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-67
Identity = 123/187 (65.78%), Postives = 155/187 (82.89%), Query Frame = 1


Query: 1    MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
            ME+PTE H  AA++I RY++GT D G+FYKKG    ++G+TDSDYAGD D+R+STSG +F
Sbjct: 1089 MENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVF 1148

Query: 61   LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
            ++ +GA+ WSSKKQPIVTLSTTEAEFVAA AC+CQAIWLRK+LE L+ KQ   T I+CDN
Sbjct: 1149 MLGTGAVSWSSKKQPIVTLSTTEAEFVAATACACQAIWLRKILEELHLKQVGATTIFCDN 1208

Query: 121  MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
             STIKLSKNPVLHGRSKHIDV+++FLR+L  +G+I+L +CRS+ Q+AD+FTKPLK   F 
Sbjct: 1209 SSTIKLSKNPVLHGRSKHIDVKYYFLRELSNDGVIDLVYCRSENQVADIFTKPLKLAAFL 1268

Query: 181  KLRRKNG 188
            KLR+  G
Sbjct: 1269 KLRKLLG 1275

[Close]

BLAST of CmaCh06G015120 vs. TrEMBL
Match: A0A151RPW5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_033933 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-67
Identity = 121/191 (63.35%), Postives = 155/191 (81.15%), Query Frame = 1


Query: 1   MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
           MEHP E H  AA+RILRY++GT +LG+FYK G + ++  YTDSDYAGD++DRKSTSG  F
Sbjct: 582 MEHPKESHFIAAKRILRYLQGTQNLGIFYKAGINEELFAYTDSDYAGDLEDRKSTSGYAF 641

Query: 61  LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
           L++ G I W SKKQP+V+LSTTEAEF+AAA C+CQ +WLR++LE L+  Q   TV++CDN
Sbjct: 642 LLAGGVISWVSKKQPVVSLSTTEAEFIAAALCACQCVWLRRILEHLDHYQVGATVMFCDN 701

Query: 121 MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
           +STIKLSKNPVLHGRSKHIDVRFHFLR+LC +G+IELNFC +  Q+AD+ TKPLK   F+
Sbjct: 702 VSTIKLSKNPVLHGRSKHIDVRFHFLRNLCNDGVIELNFCSTKNQLADIMTKPLKVEDFQ 761

Query: 181 KLRRKNGDMQN 192
           +LR   G +++
Sbjct: 762 RLRSALGMLED 772

[Close]

BLAST of CmaCh06G015120 vs. TrEMBL
Match: A5AFP3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023209 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 9.0e-67
Identity = 122/187 (65.24%), Postives = 154/187 (82.35%), Query Frame = 1


Query: 1    MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
            ME+PTE HL AA+RI RY++GT D G+ YK+G+   ++G++DSDYAGD+DDRKSTSG++F
Sbjct: 999  MENPTEVHLLAAKRIFRYLKGTVDFGILYKRGEKSXLIGFSDSDYAGDLDDRKSTSGAVF 1058

Query: 61   LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
            +++S AI WSSKKQ I TLSTTEAEFV AA+ SCQAIWLR++LE+L  +Q   TVIYCDN
Sbjct: 1059 MLNSXAITWSSKKQQIXTLSTTEAEFVXAASSSCQAIWLRRLLEVLYNQQQGPTVIYCDN 1118

Query: 121  MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
            +  IKLSKN VLHGRSKHIDVR+HFL DLCK+G+I+L FC+S++QI D+ TKPLK  +F 
Sbjct: 1119 LXAIKLSKNLVLHGRSKHIDVRYHFLCDLCKDGVIDLVFCKSEDQIXDILTKPLKPAVFM 1178

Query: 181  KLRRKNG 188
            KLR   G
Sbjct: 1179 KLRSMLG 1185

[Close]

BLAST of CmaCh06G015120 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-21
Identity = 55/174 (31.61%), Postives = 93/174 (53.45%), Query Frame = 1


Query: 2   EHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIFL 61
           E P   H  A  +IL Y++GT   G+FY    + ++  ++D+ +    D R+ST+G    
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466

Query: 62  MSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDNM 121
           + +  I W SKKQ +V+ S+ EAE+ A +  + + +WL +    L       T+++CDN 
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNT 526

Query: 122 STIKLSKNPVLHGRSKHIDVRFHFLRD-LCKEGIIELNFCRSDEQIADLFTKPL 175
           + I ++ N V H R+KHI+   H +R+    +  +  +F   DEQ  D FT+ L
Sbjct: 527 AAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQ--DGFTEYL 578

[Close]

BLAST of CmaCh06G015120 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 1


Query: 1   MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
           M  PT    +  +R+LRYV+GT   G++  K     +  + DSD+AG    R+ST+G   
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIW 99
            +    I WS+K+QP V+ S+TE E+ A A  + +  W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh06G015120 vs. TAIR10
Match: AT4G15930.1 (AT4G15930.1 Dynein light chain type 1 family protein)

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-09
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1


Query: 195 SYVTHETNHFVYFYLDQKAVLLFKSG 221
           SYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 98  SYVTHETNHFVYFYLDQKAVLLFKSG 123

[Close]

BLAST of CmaCh06G015120 vs. NCBI nr
Match: gi|147859212|emb|CAN81839.1| (hypothetical protein VITISV_033739 [Vitis vinifera])

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 131/183 (71.58%), Postives = 154/183 (84.15%), Query Frame = 1


Query: 1    MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
            MEHPTE HL AA+RILRYV+GT + GVFYKKG D K +GYTDSDYAGD DDRKSTSG +F
Sbjct: 895  MEHPTESHLLAAKRILRYVKGTVEFGVFYKKGGDDKFIGYTDSDYAGDHDDRKSTSGYVF 954

Query: 61   LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
             M+S A+ WSSKKQP+VTLSTTEAEF+AAA+ +CQA+WLR++L+ LNQ Q S TVIYCDN
Sbjct: 955  -MNSSAVSWSSKKQPVVTLSTTEAEFIAAASSACQAVWLRRILKSLNQVQTSPTVIYCDN 1014

Query: 121  MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
            +S IKLSKNPV+H RSKHIDVRFHFLRDL K+ ++EL  C + EQIAD+ TKPLK   F+
Sbjct: 1015 VSAIKLSKNPVMHSRSKHIDVRFHFLRDLIKDEVVELLQCSTHEQIADIMTKPLKLEAFQ 1074

Query: 181  KLR 184
            KLR
Sbjct: 1075 KLR 1076

[Close]

BLAST of CmaCh06G015120 vs. NCBI nr
Match: gi|1012326350|gb|KYP38163.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 264.2 bits (674), Expect = 2.0e-67
Identity = 121/191 (63.35%), Postives = 155/191 (81.15%), Query Frame = 1


Query: 1   MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
           MEHP E H  AA+RILRY++GT +LG+FYK G + ++  YTDSDYAGD++DRKSTSG  F
Sbjct: 727 MEHPKESHFIAAKRILRYLQGTQNLGIFYKAGINEELFAYTDSDYAGDLEDRKSTSGYAF 786

Query: 61  LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
           L++ G I W SKKQP+V+LSTTEAEF+AAA C+CQ +WLR++LE L+  Q   TV++CDN
Sbjct: 787 LLAGGVISWVSKKQPVVSLSTTEAEFIAAALCACQCVWLRRILEHLDHYQVGATVMFCDN 846

Query: 121 MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
           +STIKLSKNPVLHGRSKHIDVRFHFLR+LC +G+IELNFC +  Q+AD+ TKPLK   F+
Sbjct: 847 VSTIKLSKNPVLHGRSKHIDVRFHFLRNLCNDGVIELNFCNTKNQLADIMTKPLKVEDFQ 906

Query: 181 KLRRKNGDMQN 192
           +LR   G +++
Sbjct: 907 RLRSALGMLED 917

[Close]

BLAST of CmaCh06G015120 vs. NCBI nr
Match: gi|147834348|emb|CAN74303.1| (hypothetical protein VITISV_032980 [Vitis vinifera])

HSP 1 Score: 263.8 bits (673), Expect = 2.6e-67
Identity = 123/187 (65.78%), Postives = 155/187 (82.89%), Query Frame = 1


Query: 1    MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
            ME+PTE H  AA++I RY++GT D G+FYKKG    ++G+TDSDYAGD D+R+STSG +F
Sbjct: 1089 MENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVF 1148

Query: 61   LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
            ++ +GA+ WSSKKQPIVTLSTTEAEFVAA AC+CQAIWLRK+LE L+ KQ   T I+CDN
Sbjct: 1149 MLGTGAVSWSSKKQPIVTLSTTEAEFVAATACACQAIWLRKILEELHLKQVGATTIFCDN 1208

Query: 121  MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
             STIKLSKNPVLHGRSKHIDV+++FLR+L  +G+I+L +CRS+ Q+AD+FTKPLK   F 
Sbjct: 1209 SSTIKLSKNPVLHGRSKHIDVKYYFLRELSNDGVIDLVYCRSENQVADIFTKPLKLAAFL 1268

Query: 181  KLRRKNG 188
            KLR+  G
Sbjct: 1269 KLRKLLG 1275

[Close]

BLAST of CmaCh06G015120 vs. NCBI nr
Match: gi|1012333183|gb|KYP44586.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 263.8 bits (673), Expect = 2.6e-67
Identity = 121/191 (63.35%), Postives = 155/191 (81.15%), Query Frame = 1


Query: 1   MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
           MEHP E H  AA+RILRY++GT +LG+FYK G + ++  YTDSDYAGD++DRKSTSG  F
Sbjct: 582 MEHPKESHFIAAKRILRYLQGTQNLGIFYKAGINEELFAYTDSDYAGDLEDRKSTSGYAF 641

Query: 61  LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
           L++ G I W SKKQP+V+LSTTEAEF+AAA C+CQ +WLR++LE L+  Q   TV++CDN
Sbjct: 642 LLAGGVISWVSKKQPVVSLSTTEAEFIAAALCACQCVWLRRILEHLDHYQVGATVMFCDN 701

Query: 121 MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
           +STIKLSKNPVLHGRSKHIDVRFHFLR+LC +G+IELNFC +  Q+AD+ TKPLK   F+
Sbjct: 702 VSTIKLSKNPVLHGRSKHIDVRFHFLRNLCNDGVIELNFCSTKNQLADIMTKPLKVEDFQ 761

Query: 181 KLRRKNGDMQN 192
           +LR   G +++
Sbjct: 762 RLRSALGMLED 772

[Close]

BLAST of CmaCh06G015120 vs. NCBI nr
Match: gi|297742676|emb|CBI35129.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 262.7 bits (670), Expect = 5.8e-67
Identity = 121/184 (65.76%), Postives = 154/184 (83.70%), Query Frame = 1


Query: 1   MEHPTEKHLNAARRILRYVRGTSDLGVFYKKGDDPKIVGYTDSDYAGDIDDRKSTSGSIF 60
           ME+PTE H  AA++I RY++GT D G+FYKKG    ++G+TDSDYAGD D+R+STSG +F
Sbjct: 264 MENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVF 323

Query: 61  LMSSGAICWSSKKQPIVTLSTTEAEFVAAAACSCQAIWLRKMLEILNQKQPSTTVIYCDN 120
           ++ +GA+ WSSKKQPIVTLSTTEAEFVAA  C+CQAIWLRK+LE L+ KQ   T I+CDN
Sbjct: 324 MLGTGAVSWSSKKQPIVTLSTTEAEFVAATVCACQAIWLRKILEELHLKQVGATTIFCDN 383

Query: 121 MSTIKLSKNPVLHGRSKHIDVRFHFLRDLCKEGIIELNFCRSDEQIADLFTKPLKQPLFE 180
            STIKLSKNPVLHGRSKHIDV+++FLRDL  +G+I+L +CRS+ Q+AD+FTKPLK  +F 
Sbjct: 384 SSTIKLSKNPVLHGRSKHIDVKYYFLRDLSNDGVIDLVYCRSENQVADIFTKPLKLAVFL 443

Query: 181 KLRR 185
           +LR+
Sbjct: 444 ELRK 447

The following BLAST results are available for this feature:

BLAST of CmaCh06G015120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	6.2e-37	42.93	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	7.6e-35	41.76	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M810_ARATH	2.0e-11	35.71	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]
YCH4_YEAST	2.3e-07	31.87	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of CmaCh06G015120 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C546_VITVI	8.7e-70	71.58	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033739 PE=4 SV=1	[more]
A0A151R6M8_CAJCA	1.4e-67	63.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A5B902_VITVI	1.8e-67	65.78	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032980 PE=4 SV=1	[more]
A0A151RPW5_CAJCA	1.8e-67	63.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5AFP3_VITVI	9.0e-67	65.24	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023209 PE=4 SV=1	[more]

BLAST of CmaCh06G015120 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	2.3e-21	31.61	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.1e-12	35.71	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]
AT4G15930.1	7.6e-09	100.00	Dynein light chain type 1 family protein	[more]

BLAST of CmaCh06G015120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147859212\|emb\|CAN81839.1\|	1.2e-69	71.58	hypothetical protein VITISV_033739 [Vitis vinifera]	[more]
gi\|1012326350\|gb\|KYP38163.1\|	2.0e-67	63.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]
gi\|147834348\|emb\|CAN74303.1\|	2.6e-67	65.78	hypothetical protein VITISV_032980 [Vitis vinifera]	[more]
gi\|1012333183\|gb\|KYP44586.1\|	2.6e-67	63.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|297742676\|emb\|CBI35129.3\|	5.8e-67	65.76	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001372	Dynein_light_chain_typ-1/2

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Cellular Component**
Term	Definition
GO:0030286	dynein complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G015120.1	CmaCh06G015120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	GENE3D	G3DSA:3.30.740.10		coord: 195..220 score: 1.
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 194..219 score: 1.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..113 score: 1.2
None	No IPR available	unknown	SSF54648	DLC	coord: 195..220 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G015120	Wild cucumber (PI 183967)	cmacpiB826
CmaCh06G015120	Wild cucumber (PI 183967)	cmacpiB862
CmaCh06G015120	Cucumber (Chinese Long) v2	cmacuB814
CmaCh06G015120	Cucumber (Chinese Long) v2	cmacuB845
CmaCh06G015120	Melon (DHL92) v3.5.1	cmameB747
CmaCh06G015120	Melon (DHL92) v3.5.1	cmameB763
CmaCh06G015120	Watermelon (Charleston Gray)	cmawcgB737
CmaCh06G015120	Watermelon (Charleston Gray)	cmawcgB745
CmaCh06G015120	Watermelon (97103) v1	cmawmB798
CmaCh06G015120	Watermelon (97103) v1	cmawmB811
CmaCh06G015120	Cucurbita pepo (Zucchini)	cmacpeB837
CmaCh06G015120	Cucurbita pepo (Zucchini)	cmacpeB853
CmaCh06G015120	Bottle gourd (USVL1VR-Ls)	cmalsiB741
CmaCh06G015120	Bottle gourd (USVL1VR-Ls)	cmalsiB757
CmaCh06G015120	Cucumber (Gy14) v2	cgybcmaB427
CmaCh06G015120	Cucumber (Gy14) v2	cgybcmaB858
CmaCh06G015120	Melon (DHL92) v3.6.1	cmamedB846
CmaCh06G015120	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G015120	Silver-seed gourd	carcmaB0145
CmaCh06G015120	Silver-seed gourd	carcmaB0393
CmaCh06G015120	Silver-seed gourd	carcmaB0849
CmaCh06G015120	Silver-seed gourd	carcmaB0986
CmaCh06G015120	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G015120	Cucumber (Chinese Long) v3	cmacucB1001
CmaCh06G015120	Watermelon (97103) v2	cmawmbB856
CmaCh06G015120	Watermelon (97103) v2	cmawmbB865
CmaCh06G015120	Wax gourd	cmawgoB1002
CmaCh06G015120	Wax gourd	cmawgoB1006
CmaCh06G015120	Cucurbita maxima (Rimu)	cmacmaB284
CmaCh06G015120	Cucurbita maxima (Rimu)	cmacmaB369
CmaCh06G015120	Cucurbita maxima (Rimu)	cmacmaB554
CmaCh06G015120	Cucumber (Gy14) v1	cgycmaB0112
CmaCh06G015120	Cucumber (Gy14) v1	cgycmaB0727
CmaCh06G015120	Cucurbita moschata (Rifu)	cmacmoB797
CmaCh06G015120	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G015120	Cucurbita moschata (Rifu)	cmacmoB837