CmaCh06G015070 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G015070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_3
Location	Cma_Chr06 : 9555247 .. 9555603 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAGAACGGCAAGGCGGAGCTCCCCACGGTGTTTTACTGGCGGTGGTCGTCGCCATCGTCATCGTGGGCCCCTTCCTCCTCGGCGACGGGGAGGCTCTTACCGAAGCCATTTCCGACCTCCTCAGCCCCTTCGGCCTCCTCCTCCTCCCCATCCTCCTCCTTCTCGCCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAGCCGGACTCCATCCACCGAGTCACTGGTTCCCCCGTCGGCGTCGCTCTCTTCCTCGTCCTCATTCTCTTCCTCCTCTACAATCGGATTTCGATCTTCGGTGGCGATGATGATTCCAGCGATTGA

mRNA sequence

ATGATTGAAGAACGGCAAGGCGGAGCTCCCCACGGTGTTTTACTGGCGGTGGTCGTCGCCATCGTCATCGTGGGCCCCTTCCTCCTCGGCGACGGGGAGGCTCTTACCGAAGCCATTTCCGACCTCCTCAGCCCCTTCGGCCTCCTCCTCCTCCCCATCCTCCTCCTTCTCGCCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAGCCGGACTCCATCCACCGAGTCACTGGTTCCCCCGTCGGCGTCGCTCTCTTCCTCGTCCTCATTCTCTTCCTCCTCTACAATCGGATTTCGATCTTCGGTGGCGATGATGATTCCAGCGATTGA

Coding sequence (CDS)

ATGATTGAAGAACGGCAAGGCGGAGCTCCCCACGGTGTTTTACTGGCGGTGGTCGTCGCCATCGTCATCGTGGGCCCCTTCCTCCTCGGCGACGGGGAGGCTCTTACCGAAGCCATTTCCGACCTCCTCAGCCCCTTCGGCCTCCTCCTCCTCCCCATCCTCCTCCTTCTCGCCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAGCCGGACTCCATCCACCGAGTCACTGGTTCCCCCGTCGGCGTCGCTCTCTTCCTCGTCCTCATTCTCTTCCTCCTCTACAATCGGATTTCGATCTTCGGTGGCGATGATGATTCCAGCGATTGA

Protein sequence

MIEERQGGAPHGVLLAVVVAIVIVGPFLLGDGEALTEAISDLLSPFGLLLLPILLLLAIQFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSSD

Homology

[Close]

BLAST of CmaCh06G015070 vs. TrEMBL
Match: A0A0A0L5U0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154405 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.4e-50
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 1


Query: 1   MIEERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAI 60
           MIEERQGGAPH +LLAVVVAIVIV PFLLGD GEALT+AISDLLSPFGLLLLPILLLL I
Sbjct: 1   MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLLPILLLLTI 60

Query: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSSD 119
           QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDS D
Sbjct: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD 119

[Close]

BLAST of CmaCh06G015070 vs. TrEMBL
Match: A0A061EPD5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021224 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 8.8e-45
Identity = 97/117 (82.91%), Postives = 109/117 (93.16%), Query Frame = 1


Query: 1   MIEERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAI 60
           M+ ERQGGAPHGV+LAVVV IV++ PFL GD GEA+TEAI++LLSP GLLLLPI+LLL I
Sbjct: 1   MLPERQGGAPHGVILAVVVGIVVLAPFLFGDQGEAITEAITELLSPVGLLLLPIILLLTI 60

Query: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDS 117
           QFLSSDRGSFVS+IFS+GEPDSIHRV+GSP GVALFLVLILFLLYNR+SIFGGDDDS
Sbjct: 61  QFLSSDRGSFVSSIFSTGEPDSIHRVSGSPFGVALFLVLILFLLYNRVSIFGGDDDS 117

[Close]

BLAST of CmaCh06G015070 vs. TrEMBL
Match: A0A0D2UV89_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G191100 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 9.8e-44
Identity = 95/120 (79.17%), Postives = 110/120 (91.67%), Query Frame = 1


Query: 1   MIEERQGG-APHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLA 60
           M+ ERQGG APHG++LAVVV IV++ PFL GD GEA+TEAIS+LL+P GLLLLPI+LLL 
Sbjct: 1   MLPERQGGGAPHGIILAVVVGIVVLAPFLFGDQGEAITEAISELLTPLGLLLLPIILLLT 60

Query: 61  IQFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSSD 119
           IQFLSSDRGSFVSA+FS+GEPD+IHRV+GSP GVALFL+LILFLLYNR+SIFGGDDDS D
Sbjct: 61  IQFLSSDRGSFVSAVFSTGEPDTIHRVSGSPFGVALFLLLILFLLYNRVSIFGGDDDSDD 120

[Close]

BLAST of CmaCh06G015070 vs. TrEMBL
Match: A0A067JYF5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18888 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-43
Identity = 97/121 (80.17%), Postives = 109/121 (90.08%), Query Frame = 1


Query: 1   MIEER--QGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLL 60
           M EER  QGGAPHG++LAVVV  V++ PFLLGD GEA+TEAI++LLSP GLLLLPI+LLL
Sbjct: 1   MFEERPQQGGAPHGIILAVVVCTVVLAPFLLGDQGEAITEAITELLSPVGLLLLPIILLL 60

Query: 61  AIQFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSS 119
            IQFLSSDRGSFVS IFS+GEPD+IHRV+GSP GVALFLVLILFLLYNR+SIFGGDDDS 
Sbjct: 61  TIQFLSSDRGSFVSTIFSTGEPDTIHRVSGSPFGVALFLVLILFLLYNRMSIFGGDDDSG 120

[Close]

BLAST of CmaCh06G015070 vs. TrEMBL
Match: W9RVE3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023507 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.8e-43
Identity = 95/117 (81.20%), Postives = 109/117 (93.16%), Query Frame = 1


Query: 3   EERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAIQF 62
           +ER GGAPHGVLLAVVVAIV++ PFLLGD GEA+TEAIS+LLSP GLLLLPI LLL IQF
Sbjct: 4   QERHGGAPHGVLLAVVVAIVVLVPFLLGDRGEAVTEAISELLSPVGLLLLPIGLLLTIQF 63

Query: 63  LSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSSD 119
           LSS+RGSFV+AIFS+GEPDSIHR++GS +GVALFL+L+LFLLYNR+SIFGGDDDS D
Sbjct: 64  LSSERGSFVAAIFSTGEPDSIHRISGSSLGVALFLILLLFLLYNRVSIFGGDDDSGD 120

[Close]

BLAST of CmaCh06G015070 vs. TAIR10
Match: AT3G06890.1 (AT3G06890.1 unknown protein)

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-42
Identity = 88/113 (77.88%), Postives = 103/113 (91.15%), Query Frame = 1


Query: 7   GGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAIQFLSSD 66
           G APHG++LAVVVA+V++ PF +GD GEA+T+AI++LLSP GLLLLPI+LLL IQFLSS+
Sbjct: 16  GSAPHGIILAVVVALVVLVPFFIGDSGEAITDAIAELLSPVGLLLLPIILLLTIQFLSSE 75

Query: 67  RGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSSD 119
           RGSFVSAIFS+GEP+SIHRV+GSPVGVALFLVLILFLLY R SIFGGDD S D
Sbjct: 76  RGSFVSAIFSTGEPESIHRVSGSPVGVALFLVLILFLLYYRFSIFGGDDGSDD 128

[Close]

BLAST of CmaCh06G015070 vs. NCBI nr
Match: gi|449432860|ref|XP_004134216.1| (PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-50
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 1


Query: 1   MIEERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAI 60
           MIEERQGGAPH +LLAVVVAIVIV PFLLGD GEALT+AISDLLSPFGLLLLPILLLL I
Sbjct: 1   MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLLPILLLLTI 60

Query: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSSD 119
           QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDS D
Sbjct: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD 119

[Close]

BLAST of CmaCh06G015070 vs. NCBI nr
Match: gi|590661219|ref|XP_007035612.1| (Uncharacterized protein TCM_021224 [Theobroma cacao])

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44
Identity = 97/117 (82.91%), Postives = 109/117 (93.16%), Query Frame = 1


Query: 1   MIEERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAI 60
           M+ ERQGGAPHGV+LAVVV IV++ PFL GD GEA+TEAI++LLSP GLLLLPI+LLL I
Sbjct: 1   MLPERQGGAPHGVILAVVVGIVVLAPFLFGDQGEAITEAITELLSPVGLLLLPIILLLTI 60

Query: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDS 117
           QFLSSDRGSFVS+IFS+GEPDSIHRV+GSP GVALFLVLILFLLYNR+SIFGGDDDS
Sbjct: 61  QFLSSDRGSFVSSIFSTGEPDSIHRVSGSPFGVALFLVLILFLLYNRVSIFGGDDDS 117

[Close]

BLAST of CmaCh06G015070 vs. NCBI nr
Match: gi|1009163267|ref|XP_015899873.1| (PREDICTED: uncharacterized protein LOC107433134 [Ziziphus jujuba])

HSP 1 Score: 185.7 bits (470), Expect = 4.8e-44
Identity = 100/125 (80.00%), Postives = 113/125 (90.40%), Query Frame = 1


Query: 1   MIEERQGG------APHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPI 60
           MI ERQGG      APHGVLLAVVVAIV+V PFL+GD GEA+TEAIS+LLSP GLLLLPI
Sbjct: 1   MIGERQGGYGGGNRAPHGVLLAVVVAIVVVVPFLVGDQGEAITEAISELLSPVGLLLLPI 60

Query: 61  LLLLAIQFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGD 119
           +LLL IQFLSSDRGSFVS++FS+GEPD+IHRV+GSPVGVALFL+LILFLLYNR+SIFGGD
Sbjct: 61  ILLLTIQFLSSDRGSFVSSMFSTGEPDTIHRVSGSPVGVALFLILILFLLYNRVSIFGGD 120

[Close]

BLAST of CmaCh06G015070 vs. NCBI nr
Match: gi|823249752|ref|XP_012457493.1| (PREDICTED: uncharacterized protein LOC105778352 [Gossypium raimondii])

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-43
Identity = 95/120 (79.17%), Postives = 110/120 (91.67%), Query Frame = 1


Query: 1   MIEERQGG-APHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLA 60
           M+ ERQGG APHG++LAVVV IV++ PFL GD GEA+TEAIS+LL+P GLLLLPI+LLL 
Sbjct: 1   MLPERQGGGAPHGIILAVVVGIVVLAPFLFGDQGEAITEAISELLTPLGLLLLPIILLLT 60

Query: 61  IQFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSSD 119
           IQFLSSDRGSFVSA+FS+GEPD+IHRV+GSP GVALFL+LILFLLYNR+SIFGGDDDS D
Sbjct: 61  IQFLSSDRGSFVSAVFSTGEPDTIHRVSGSPFGVALFLLLILFLLYNRVSIFGGDDDSDD 120

[Close]

BLAST of CmaCh06G015070 vs. NCBI nr
Match: gi|802701504|ref|XP_012083955.1| (PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas])

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-43
Identity = 97/121 (80.17%), Postives = 109/121 (90.08%), Query Frame = 1


Query: 1   MIEER--QGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLL 60
           M EER  QGGAPHG++LAVVV  V++ PFLLGD GEA+TEAI++LLSP GLLLLPI+LLL
Sbjct: 1   MFEERPQQGGAPHGIILAVVVCTVVLAPFLLGDQGEAITEAITELLSPVGLLLLPIILLL 60

Query: 61  AIQFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSS 119
            IQFLSSDRGSFVS IFS+GEPD+IHRV+GSP GVALFLVLILFLLYNR+SIFGGDDDS 
Sbjct: 61  TIQFLSSDRGSFVSTIFSTGEPDTIHRVSGSPFGVALFLVLILFLLYNRMSIFGGDDDSG 120

The following BLAST results are available for this feature:

BLAST of CmaCh06G015070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G015070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5U0_CUCSA	1.4e-50	94.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154405 PE=4 SV=1	[more]
A0A061EPD5_THECC	8.8e-45	82.91	Uncharacterized protein OS=Theobroma cacao GN=TCM_021224 PE=4 SV=1	[more]
A0A0D2UV89_GOSRA	9.8e-44	79.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G191100 PE=4 SV=1	[more]
A0A067JYF5_JATCU	1.3e-43	80.17	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18888 PE=4 SV=1	[more]
W9RVE3_9ROSA	2.8e-43	81.20	Uncharacterized protein OS=Morus notabilis GN=L484_023507 PE=4 SV=1	[more]

BLAST of CmaCh06G015070 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06890.1	1.6e-42	77.88	unknown protein	[more]

BLAST of CmaCh06G015070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432860\|ref\|XP_004134216.1\|	2.0e-50	94.12	PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus]	[more]
gi\|590661219\|ref\|XP_007035612.1\|	1.3e-44	82.91	Uncharacterized protein TCM_021224 [Theobroma cacao]	[more]
gi\|1009163267\|ref\|XP_015899873.1\|	4.8e-44	80.00	PREDICTED: uncharacterized protein LOC107433134 [Ziziphus jujuba]	[more]
gi\|823249752\|ref\|XP_012457493.1\|	1.4e-43	79.17	PREDICTED: uncharacterized protein LOC105778352 [Gossypium raimondii]	[more]
gi\|802701504\|ref\|XP_012083955.1\|	1.8e-43	80.17	PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G015070.1	CmaCh06G015070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 2..118 score: 7.7
None	No IPR available	PANTHER	PTHR33306:SF1	SUBFAMILY NOT NAMED	coord: 2..118 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G015070	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G015070	Watermelon (97103) v2	cmawmbB856
CmaCh06G015070	Watermelon (97103) v2	cmawmbB865
CmaCh06G015070	Wax gourd	cmawgoB1002
CmaCh06G015070	Wax gourd	cmawgoB1006
CmaCh06G015070	Cucurbita maxima (Rimu)	cmacmaB284
CmaCh06G015070	Cucurbita maxima (Rimu)	cmacmaB369
CmaCh06G015070	Cucurbita maxima (Rimu)	cmacmaB554
CmaCh06G015070	Cucumber (Gy14) v1	cgycmaB0727
CmaCh06G015070	Cucurbita moschata (Rifu)	cmacmoB797
CmaCh06G015070	Cucurbita moschata (Rifu)	cmacmoB810
CmaCh06G015070	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G015070	Cucurbita moschata (Rifu)	cmacmoB837
CmaCh06G015070	Wild cucumber (PI 183967)	cmacpiB826
CmaCh06G015070	Cucumber (Chinese Long) v2	cmacuB814
CmaCh06G015070	Melon (DHL92) v3.5.1	cmameB747
CmaCh06G015070	Melon (DHL92) v3.5.1	cmameB763
CmaCh06G015070	Watermelon (Charleston Gray)	cmawcgB737
CmaCh06G015070	Watermelon (Charleston Gray)	cmawcgB745
CmaCh06G015070	Watermelon (97103) v1	cmawmB798
CmaCh06G015070	Watermelon (97103) v1	cmawmB811
CmaCh06G015070	Cucurbita pepo (Zucchini)	cmacpeB837
CmaCh06G015070	Cucurbita pepo (Zucchini)	cmacpeB810
CmaCh06G015070	Cucurbita pepo (Zucchini)	cmacpeB822
CmaCh06G015070	Cucurbita pepo (Zucchini)	cmacpeB853
CmaCh06G015070	Bottle gourd (USVL1VR-Ls)	cmalsiB741
CmaCh06G015070	Bottle gourd (USVL1VR-Ls)	cmalsiB757
CmaCh06G015070	Cucumber (Gy14) v2	cgybcmaB427
CmaCh06G015070	Melon (DHL92) v3.6.1	cmamedB846
CmaCh06G015070	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G015070	Silver-seed gourd	carcmaB0094
CmaCh06G015070	Silver-seed gourd	carcmaB0145
CmaCh06G015070	Silver-seed gourd	carcmaB0849
CmaCh06G015070	Silver-seed gourd	carcmaB0986
CmaCh06G015070	Silver-seed gourd	carcmaB1155