CmaCh06G014480 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G014480
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Endonuclease/exonuclease/phosphatase family protein
Location	Cma_Chr06 : 9278950 .. 9279467 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTCTAGCACCTGCTGTTCCCATTGCAGAGAAGTCAGCAACATTCAGCTTTGGTAGAAAGGAAAGCAGTTTTATAAGCCCTGTGAATCATTGCCCAAAGAGTATACTAAAGCAATCTCCATTAACCAAGACTGAATCTCTCTCAAGATCAAAGCCCAAAGTTTCCATTAATCTTCCTGACAACGAGATTTCCTTAGCAAACAAGTTTCCTGGTTCCATGGAAGACAAAACACCGAGCTTATCGAAGACGACGAACGAAAAAAGGTACTTCAAGTTTGCTGGTTTTCATCACTCTTTTCTCTTTTCTCTTTTCTTTTGCTTTCTGTAACACGTTTTTGTTTTTCGTCTTCTGGGGAATTGCAGTAATGCTGAACTGATGAATTATTCGATTTGGATTTCAGAAACTTGCTAAAGGTCGCGATCGACATGCGGGGACGGGAGAAGTTAACATCTACTGCACTCGACCATCTGGATGAGCATTGGANATGGGCAGGGCTGATTGTGGAAATGTAG

mRNA sequence

ATGTTCTCTCTAGCACCTGCTGTTCCCATTGCAGAGAAGTCAGCAACATTCAGCTTTGGTAGAAAGGAAAGCAGTTTTATAAGCCCTGTGAATCATTGCCCAAAGAGTATACTAAAGCAATCTCCATTAACCAAGACTGAATCTCTCTCAAGATCAAAGCCCAAAGTTTCCATTAATCTTCCTGACAACGAGATTTCCTTAGCAAACAAGTTTCCTGGTTCCATGGAAGACAAAACACCGAGCTTATCGAAGACGACGAACGAAAAAAGAAACTTGCTAAAGGTCGCGATCGACATGCGGGGACGGGAGAAGTTAACATCTACTGCACTCGACCATCTGGATGAGCATTGGANATGGGCAGGGCTGATTGTGGAAATGTAG

Coding sequence (CDS)

ATGTTCTCTCTAGCACCTGCTGTTCCCATTGCAGAGAAGTCAGCAACATTCAGCTTTGGTAGAAAGGAAAGCAGTTTTATAAGCCCTGTGAATCATTGCCCAAAGAGTATACTAAAGCAATCTCCATTAACCAAGACTGAATCTCTCTCAAGATCAAAGCCCAAAGTTTCCATTAATCTTCCTGACAACGAGATTTCCTTAGCAAACAAGTTTCCTGGTTCCATGGAAGACAAAACACCGAGCTTATCGAAGACGACGAACGAAAAAAGAAACTTGCTAAAGGTCGCGATCGACATGCGGGGACGGGAGAAGTTAACATCTACTGCACTCGACCATCTGGATGAGCATTGGANATGGGCAGGGCTGATTGTGGAAATGTAG

Protein sequence

MFSLAPAVPIAEKSATFSFGRKESSFISPVNHCPKSILKQSPLTKTESLSRSKPKVSINLPDNEISLANKFPGSMEDKTPSLSKTTNEKRNLLKVAIDMRGREKLTSTALDHLDEHWXWAGLIVEM

Homology

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BLAST of CmaCh06G014480 vs. TrEMBL
Match: A0A0A0L5Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150770 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.7e-28
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 1


Query: 1   MFSLAPAVPIAEKSATFSFGRKESSFISPVNHCPKSILKQSP----LTKTESLSRSKPKV 60
           MFSLAPAVP+AEK ATF FGRKE SF SPVNHCPKSILKQSP    L+KTESLSRSKPKV
Sbjct: 77  MFSLAPAVPVAEKPATFGFGRKEYSFRSPVNHCPKSILKQSPLHTALSKTESLSRSKPKV 136

Query: 61  SINLPDNEISLA-NKFPGSMEDKTPSLSKTTNEK 90
           SINLPDNEISLA NK   SME+ TP L+KTT+++
Sbjct: 137 SINLPDNEISLANNKLSASMENGTPGLTKTTDKR 170

[Close]

BLAST of CmaCh06G014480 vs. TrEMBL
Match: A0A068TSB9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025938001 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 49/97 (50.52%), Postives = 60/97 (61.86%), Query Frame = 1


Query: 1   MFSLAPAVPIAEKSATFSFGRKE----SSFISPVNHCPKSILKQSPLTKTES-------- 60
           +FSLAPA+P AEKS  F  G +E     + + PV+  PKSILKQSPL  T          
Sbjct: 77  LFSLAPAIPKAEKSVVFIPGDEEYLKSETRVKPVSGRPKSILKQSPLHPTIGDPELTSSQ 136

Query: 61  --LSRSKPKVSINLPDNEISLA-NKFPGSMEDKTPSL 83
             L+RSKPKVSINLP+NEISLA NK     ED + ++
Sbjct: 137 IKLTRSKPKVSINLPENEISLAQNKVLSFEEDSSTNI 173

[Close]

BLAST of CmaCh06G014480 vs. TrEMBL
Match: B9RSW0_RICCO (Hydrolase, putative OS=Ricinus communis GN=RCOM_0679030 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-08
Identity = 52/118 (44.07%), Postives = 63/118 (53.39%), Query Frame = 1


Query: 1   MFSLAPAVPIAEKSATF-SFGRKESSFIS----------PVNHCPKSILKQSPLTKTESL 60
           MFSLAPAVP AE++  F S  + + +F+           PVNH PKSILKQSPL     +
Sbjct: 77  MFSLAPAVPKAEEAVVFGSQDQGDFTFLKNPVEMHTQAKPVNHHPKSILKQSPLRAANLI 136

Query: 61  SR---------SKPKVSINLPDNEISLAN-KFPGSMEDKTPSLSKTTNEKRNLLKVAI 98
           S          SK KVSINLPDNEISLA+ KF   +ED     S     + N   V +
Sbjct: 137 SSPEQLSPQKVSKRKVSINLPDNEISLAHKKFLSFIEDDKVGSSNIIASRNNRSSVVL 194

[Close]

BLAST of CmaCh06G014480 vs. TrEMBL
Match: F6HQ43_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00790 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 52/130 (40.00%), Postives = 66/130 (50.77%), Query Frame = 1


Query: 1   MFSLAPAVPIAEKSATFSFGR----KESSFIS------PVNHCPKSILKQSPL------- 60
           +FS+APAVP AEK   F  G     KE   +         N  PKSILKQSPL       
Sbjct: 97  LFSMAPAVPRAEKGENFGNGNVEGLKEKRSVDMNFRTKSANERPKSILKQSPLHPNSMIL 156

Query: 61  ----TKTESLSRSKPKVSINLPDNEISLA-NKFPGSMEDKTPSLSKTTNEKRNLLKVAID 109
               +K +  ++SKP+VSINLPDNEISL  N+    +E+K  S S T         +   
Sbjct: 157 PENLSKQQKFAKSKPRVSINLPDNEISLGRNRKLSFVEEKEGSSSST---------IGRI 216

[Close]

BLAST of CmaCh06G014480 vs. TrEMBL
Match: A0A0A0KDU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409370 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 1


Query: 2   FSLAPAVPI-AEKSATFSFGRKESSFISPVNHCPKSILKQSPL---TKTESLSRSKPKVS 61
           FS+APAVP  +  SA F      +S    VN  PKSILKQSPL   +    ++R+KP+VS
Sbjct: 87  FSMAPAVPEKSNSSAKFRRSLDSNSRTKSVNDRPKSILKQSPLHTNSINNGVARTKPRVS 146

Query: 62  INLPDNEISLANKFPGSMEDKTPSLSKTTNEKRNL 93
           INLPDNEISL      S  +   +LS + N+++ +
Sbjct: 147 INLPDNEISLLRNRQASEYEMEENLSSSGNDRKGM 181

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BLAST of CmaCh06G014480 vs. TAIR10
Match: AT3G21530.1 (AT3G21530.1 DNAse I-like superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 38/71 (53.52%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 1   MFSLAPAVPIAEKSATFSFGRKESSFISPVNHCPKSILKQSPLTKTESLSRSKPKVSINL 60
           MFSLAP V   E++A    G  +SS I+  +  PK ILKQSPL    S +  KPKV INL
Sbjct: 72  MFSLAPVVQTMEETAFL--GHLDSSNITCPS--PKGILKQSPL---HSSAVRKPKVCINL 131

Query: 61  PDNEISLANKF 72
           PDNEISLA  +
Sbjct: 132 PDNEISLAQSY 135

[Close]

BLAST of CmaCh06G014480 vs. NCBI nr
Match: gi|659076584|ref|XP_008438759.1| (PREDICTED: uncharacterized protein LOC103483772 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 5.2e-28
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 1


Query: 1   MFSLAPAVPIAEKSATFSFGRKESSFISPVNHCPKSILKQSP----LTKTESLSRSKPKV 60
           MFSLAPAVP+AEK ATF F RKE SF SPVNHCPKSILKQSP    L+KTESLSRSKPKV
Sbjct: 77  MFSLAPAVPVAEKPATFGFRRKECSFRSPVNHCPKSILKQSPLHNALSKTESLSRSKPKV 136

Query: 61  SINLPDNEISLA-NKFPGSMEDKTPSLSKTTNEK 90
           SINLPDNEISLA NK   SME++TPSL+KTT+++
Sbjct: 137 SINLPDNEISLANNKLSASMEEETPSLTKTTDKR 170

[Close]

BLAST of CmaCh06G014480 vs. NCBI nr
Match: gi|449432773|ref|XP_004134173.1| (PREDICTED: uncharacterized protein LOC101215085 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 6.8e-28
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 1


Query: 1   MFSLAPAVPIAEKSATFSFGRKESSFISPVNHCPKSILKQSP----LTKTESLSRSKPKV 60
           MFSLAPAVP+AEK ATF FGRKE SF SPVNHCPKSILKQSP    L+KTESLSRSKPKV
Sbjct: 77  MFSLAPAVPVAEKPATFGFGRKEYSFRSPVNHCPKSILKQSPLHTALSKTESLSRSKPKV 136

Query: 61  SINLPDNEISLA-NKFPGSMEDKTPSLSKTTNEK 90
           SINLPDNEISLA NK   SME+ TP L+KTT+++
Sbjct: 137 SINLPDNEISLANNKLSASMENGTPGLTKTTDKR 170

[Close]

BLAST of CmaCh06G014480 vs. NCBI nr
Match: gi|661897240|emb|CDO98952.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-09
Identity = 49/97 (50.52%), Postives = 60/97 (61.86%), Query Frame = 1


Query: 1   MFSLAPAVPIAEKSATFSFGRKE----SSFISPVNHCPKSILKQSPLTKTES-------- 60
           +FSLAPA+P AEKS  F  G +E     + + PV+  PKSILKQSPL  T          
Sbjct: 77  LFSLAPAIPKAEKSVVFIPGDEEYLKSETRVKPVSGRPKSILKQSPLHPTIGDPELTSSQ 136

Query: 61  --LSRSKPKVSINLPDNEISLA-NKFPGSMEDKTPSL 83
             L+RSKPKVSINLP+NEISLA NK     ED + ++
Sbjct: 137 IKLTRSKPKVSINLPENEISLAQNKVLSFEEDSSTNI 173

[Close]

BLAST of CmaCh06G014480 vs. NCBI nr
Match: gi|698562656|ref|XP_009772474.1| (PREDICTED: uncharacterized protein LOC104222850 [Nicotiana sylvestris])

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 1   MFSLAPAVPIAEKSATFSFGRKESSFI------SPVNHCPKSILKQSPLTKTE-SLSRSK 60
           +FSLAPAVP AEKS  FS    +  F       S +N  PKSILK SPL  T  + ++ K
Sbjct: 92  LFSLAPAVPKAEKSVIFSHDDDDDGFKFQNQVKSEINSRPKSILKHSPLHPTLINGAKPK 151

Query: 61  PKVSINLPDNEISLA-NKFPGSMEDKTPSLSKTTN 88
           PKVSINLP+NEISLA N+  G +ED +  +    N
Sbjct: 152 PKVSINLPENEISLAQNRVFGMLEDDSTKILSLNN 186

[Close]

BLAST of CmaCh06G014480 vs. NCBI nr
Match: gi|697148820|ref|XP_009628600.1| (PREDICTED: uncharacterized protein LOC104118917 [Nicotiana tomentosiformis])

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-08
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 1   MFSLAPAVPIAEKSATFSFGRKESSFI------SPVNHCPKSILKQSPLTKTE-SLSRSK 60
           +FSLAPAVP AEKS  F+    +  F       S +N  PKSILK SPL  T  + ++ K
Sbjct: 92  LFSLAPAVPKAEKSVIFAHDDDDDGFKFQNQVKSEINSRPKSILKHSPLHPTLINGAKPK 151

Query: 61  PKVSINLPDNEISLA-NKFPGSMEDKTPSLSKTTN 88
           PKVSINLP+NEISLA N+  G +ED +  +    N
Sbjct: 152 PKVSINLPENEISLAQNRVFGMLEDDSTKILSLNN 186

The following BLAST results are available for this feature:

BLAST of CmaCh06G014480 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G014480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Q2_CUCSA	4.7e-28	77.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150770 PE=4 SV=1	[more]
A0A068TSB9_COFCA	1.7e-09	50.52	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025938001 PE=4 SV=1	[more]
B9RSW0_RICCO	3.2e-08	44.07	Hydrolase, putative OS=Ricinus communis GN=RCOM_0679030 PE=4 SV=1	[more]
F6HQ43_VITVI	1.2e-07	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00790 PE=4 SV=...	[more]
A0A0A0KDU0_CUCSA	2.1e-07	44.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409370 PE=4 SV=1	[more]

BLAST of CmaCh06G014480 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21530.1	1.4e-07	53.52	DNAse I-like superfamily protein	[more]

BLAST of CmaCh06G014480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076584\|ref\|XP_008438759.1\|	5.2e-28	77.66	PREDICTED: uncharacterized protein LOC103483772 [Cucumis melo]	[more]
gi\|449432773\|ref\|XP_004134173.1\|	6.8e-28	77.66	PREDICTED: uncharacterized protein LOC101215085 [Cucumis sativus]	[more]
gi\|661897240\|emb\|CDO98952.1\|	2.4e-09	50.52	unnamed protein product [Coffea canephora]	[more]
gi\|698562656\|ref\|XP_009772474.1\|	1.6e-08	49.47	PREDICTED: uncharacterized protein LOC104222850 [Nicotiana sylvestris]	[more]
gi\|697148820\|ref\|XP_009628600.1\|	3.5e-08	48.42	PREDICTED: uncharacterized protein LOC104118917 [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027317	PGAP2-interacting protein

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G014480.1	CmaCh06G014480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027317	PGAP2-interacting protein	PANTHER	PTHR14859	CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR	coord: 1..69 score: 3.3
None	No IPR available	PANTHER	PTHR14859:SF2	DNASE I-LIKE SUPERFAMILY PROTEIN	coord: 1..69 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G014480	Cucsa.253770	Cucumber (Gy14) v1	cgycmaB0727
CmaCh06G014480	Cla021685	Watermelon (97103) v1	cmawmB798
CmaCh06G014480	Csa3G150770	Cucumber (Chinese Long) v2	cmacuB814
CmaCh06G014480	MELO3C006587	Melon (DHL92) v3.5.1	cmameB763
CmaCh06G014480	ClCG05G005620	Watermelon (Charleston Gray)	cmawcgB737
CmaCh06G014480	CSPI03G13730	Wild cucumber (PI 183967)	cmacpiB826
CmaCh06G014480	CmoCh14G017020	Cucurbita moschata (Rifu)	cmacmoB797
CmaCh06G014480	Lsi05G014790	Bottle gourd (USVL1VR-Ls)	cmalsiB757
CmaCh06G014480	Cp4.1LG03g11000	Cucurbita pepo (Zucchini)	cmacpeB837
CmaCh06G014480	MELO3C006587.2	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G014480	CsaV3_3G013960	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G014480	Cla97C05G087030	Watermelon (97103) v2	cmawmbB856
CmaCh06G014480	Bhi01G000654	Wax gourd	cmawgoB1006
CmaCh06G014480	Carg20155	Silver-seed gourd	carcmaB1155

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G014480	CmaCh14G016570	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G014480	Watermelon (97103) v2	cmawmbB865
CmaCh06G014480	Wax gourd	cmawgoB1003
CmaCh06G014480	Cucurbita maxima (Rimu)	cmacmaB369
CmaCh06G014480	Cucurbita maxima (Rimu)	cmacmaB554
CmaCh06G014480	Cucurbita maxima (Rimu)	cmacmaB555
CmaCh06G014480	Cucurbita moschata (Rifu)	cmacmoB810
CmaCh06G014480	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G014480	Cucurbita moschata (Rifu)	cmacmoB837
CmaCh06G014480	Cucurbita moschata (Rifu)	cmacmoB838
CmaCh06G014480	Melon (DHL92) v3.5.1	cmameB747
CmaCh06G014480	Watermelon (Charleston Gray)	cmawcgB745
CmaCh06G014480	Watermelon (97103) v1	cmawmB811
CmaCh06G014480	Cucurbita pepo (Zucchini)	cmacpeB810
CmaCh06G014480	Cucurbita pepo (Zucchini)	cmacpeB824
CmaCh06G014480	Cucurbita pepo (Zucchini)	cmacpeB853
CmaCh06G014480	Bottle gourd (USVL1VR-Ls)	cmalsiB741
CmaCh06G014480	Cucumber (Gy14) v2	cgybcmaB427
CmaCh06G014480	Cucumber (Gy14) v2	cgybcmaB857
CmaCh06G014480	Cucumber (Gy14) v2	cgybcmaB971
CmaCh06G014480	Melon (DHL92) v3.6.1	cmamedB846
CmaCh06G014480	Silver-seed gourd	carcmaB0094
CmaCh06G014480	Silver-seed gourd	carcmaB0457
CmaCh06G014480	Silver-seed gourd	carcmaB0849
CmaCh06G014480	Cucumber (Chinese Long) v3	cmacucB0999