CmaCh06G013750 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGGATCGTCTTCACGTTCCCATGTTTTTTTGCCACTCCGCCACCCACCGCCGCCACCCACCGCCGCCACCACCACCAGGTTTTATAGTCACTAATTACTTTTACAAAAAATATATATATATATTGTTCCAAACTAAAGGCCTTGTAGAAAGCCCATAATGAGGATGGATTATCAATAGTTTGGGCCTGGACTCGAAGAAGGCTTGCTTTGGGCCTCAATAGAATTATTTTTGCTCCTCCGCCACGTCCCGGCTGTCCTCCGCGTCCCTCTCGATTCCCCTTGGAGTCCGTCAATTCCAAGATTACGACCGGCGGCGACGTGGAGGGGTTTTTGGTTTTTATGAACCCTTTTGGTAACTTTGTGCCTTCTTGTAAAATTTTATTGACTCTGTTCCGACGAAGATTCGATCGTGTTCTTCCAGCAGGACGTGTCTCCTCGGACATCCGGCAGGCTGCCGCACAGCAGCGACTCACTAAACGCCGCCTACAGCCCACCTTTTACTCCTCCTGAAATTGCCGACCACGACAACAAGGTTTGTTTTTTTCTTAGTTAGTCACTGCATCAGCTGTTCGAACAGTCATCGATTGTTCCATTTTTAGACGAAAAACGTCGTTGGATATTAAAAGAAACCATTTTTAACAGTTTTGGAAAATACTAAATATGACATGAAAACTTTGGAATTTGGGGAAATATAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTNAATGGGAAATTTTAATTTTTATTTTATATTCCTTTGTTACAGGTTGTGTTGAAGATGAAGAGCAGGCACGTGGCTGGGGCTATAACCAAAAAGAAAAAGAGTAAGTTTTGTTTATTAATTAATTACATTATCATATTCCGAATATTCCGAATATTCCGAATATTCAAGTTAATTGGATTCCTGCACAGATGTGGTGGTGGATGTAGTGAAAGATATTCCGGCATGGGCAGGGCGGCACCTGCTGGAGGGCGGCGATGACCGCCGCTACTTCGGGCTTAAGACACTGATGCGAGGGGTGGTGGAATTCGAGTGCAGAAACCAGAGAGAATATGATATGTGGACACAGGGAGTTGCCAAGCTTCTTGTAATGGCGGCTGAAAGGACTTGTATGTTCCAAGATCAACCTGTTTGAACGAGGAACACAAATTGTAAATTATAAGCTTTTTTCCTTCTTGTTTTTTTCAAAATTGTTTTTAATGATTTTAATGTTCCACTCTAACGACCCGACCCGACTCGACTCTCACAACTTTTCTTAAGGCTTGCTACTAATGCATCGACTTGTTTAACTTCA ATGTCGGATCGTCTTCACGTTCCCATGTTTTTTTGCCACTCCGCCACCCACCGCCGCCACCCACCGCCGCCACCACCACCAGATTCGATCGTGTTCTTCCAGCAGGACGTGTCTCCTCGGACATCCGGCAGGCTGCCGCACAGCAGCGACTCACTAAACGCCGCCTACAGCCCACCTTTTACTCCTCCTGAAATTGCCGACCACGACAACAAGGTTGTGTTGAAGATGAAGAGCAGGCACGTGGCTGGGGCTATAACCAAAAAGAAAAAGAATGTGGTGGTGGATGTAGTGAAAGATATTCCGGCATGGGCAGGGCGGCACCTGCTGGAGGGCGGCGATGACCGCCGCTACTTCGGGCTTAAGACACTGATGCGAGGGGTGGTGGAATTCGAGTGCAGAAACCAGAGAGAATATGATATGTGGACACAGGGAGTTGCCAAGCTTCTTGTAATGGCGGCTGAAAGGACTTGTATGTTCCAAGATCAACCTGTTTGAACGAGGAACACAAATTGTAAATTATAAGCTTTTTTCCTTCTTGTTTTTTTCAAAATTGTTTTTAATGATTTTAATGTTCCACTCTAACGACCCGACCCGACTCGACTCTCACAACTTTTCTTAAGGCTTGCTACTAATGCATCGACTTGTTTAACTTCA ATGTCGGATCGTCTTCACGTTCCCATGTTTTTTTGCCACTCCGCCACCCACCGCCGCCACCCACCGCCGCCACCACCACCAGATTCGATCGTGTTCTTCCAGCAGGACGTGTCTCCTCGGACATCCGGCAGGCTGCCGCACAGCAGCGACTCACTAAACGCCGCCTACAGCCCACCTTTTACTCCTCCTGAAATTGCCGACCACGACAACAAGGTTGTGTTGAAGATGAAGAGCAGGCACGTGGCTGGGGCTATAACCAAAAAGAAAAAGAATGTGGTGGTGGATGTAGTGAAAGATATTCCGGCATGGGCAGGGCGGCACCTGCTGGAGGGCGGCGATGACCGCCGCTACTTCGGGCTTAAGACACTGATGCGAGGGGTGGTGGAATTCGAGTGCAGAAACCAGAGAGAATATGATATGTGGACACAGGGAGTTGCCAAGCTTCTTGTAATGGCGGCTGAAAGGACTTGTATGTTCCAAGATCAACCTGTTTGA MSDRLHVPMFFCHSATHRRHPPPPPPPDSIVFFQQDVSPRTSGRLPHSSDSLNAAYSPPFTPPEIADHDNKVVLKMKSRHVAGAITKKKKNVVVDVVKDIPAWAGRHLLEGGDDRRYFGLKTLMRGVVEFECRNQREYDMWTQGVAKLLVMAAERTCMFQDQPV
BLAST of CmaCh06G013750 vs. Swiss-Prot
Match: VAB_ARATH (VAN3-binding protein OS=Arabidopsis thaliana GN=VAB PE=1 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 6.3e-26 Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1
BLAST of CmaCh06G013750 vs. TrEMBL
Match: A0A0A0LA55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146320 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38 Identity = 77/90 (85.56%), Postives = 85/90 (94.44%), Query Frame = 1
BLAST of CmaCh06G013750 vs. TrEMBL
Match: I1LE17_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G244600 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 3.0e-35 Identity = 69/86 (80.23%), Postives = 83/86 (96.51%), Query Frame = 1
BLAST of CmaCh06G013750 vs. TrEMBL
Match: A0A0B2P084_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_015988 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 3.0e-35 Identity = 69/86 (80.23%), Postives = 83/86 (96.51%), Query Frame = 1
BLAST of CmaCh06G013750 vs. TrEMBL
Match: A0A0R0HYD6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G244600 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 3.0e-35 Identity = 69/86 (80.23%), Postives = 83/86 (96.51%), Query Frame = 1
BLAST of CmaCh06G013750 vs. TrEMBL
Match: A0A061EMB1_THECC (Emb:CAB10253.1 isoform 2 OS=Theobroma cacao GN=TCM_020692 PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34 Identity = 69/86 (80.23%), Postives = 83/86 (96.51%), Query Frame = 1
BLAST of CmaCh06G013750 vs. TAIR10
Match: AT4G14740.1 (AT4G14740.1 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region) HSP 1 Score: 146.0 bits (367), Expect = 2.1e-35 Identity = 65/86 (75.58%), Postives = 79/86 (91.86%), Query Frame = 1
BLAST of CmaCh06G013750 vs. TAIR10
Match: AT3G22810.1 (AT3G22810.1 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region) HSP 1 Score: 141.0 bits (354), Expect = 6.7e-34 Identity = 60/86 (69.77%), Postives = 77/86 (89.53%), Query Frame = 1
BLAST of CmaCh06G013750 vs. TAIR10
Match: AT5G43870.1 (AT5G43870.1 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region) HSP 1 Score: 127.1 bits (318), Expect = 1.0e-29 Identity = 56/85 (65.88%), Postives = 74/85 (87.06%), Query Frame = 1
BLAST of CmaCh06G013750 vs. TAIR10
Match: AT3G63300.1 (AT3G63300.1 FORKED 1) HSP 1 Score: 118.6 bits (296), Expect = 3.5e-27 Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1
BLAST of CmaCh06G013750 vs. TAIR10
Match: AT4G32785.1 (AT4G32785.1 Pleckstrin-like, plant (InterPro:IPR013666), Pleckstrin homology (InterPro:IPR001849)) HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1
BLAST of CmaCh06G013750 vs. NCBI nr
Match: gi|659076335|ref|XP_008438623.1| (PREDICTED: uncharacterized protein LOC103483679 [Cucumis melo]) HSP 1 Score: 168.7 bits (426), Expect = 8.5e-39 Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 1
BLAST of CmaCh06G013750 vs. NCBI nr
Match: gi|778678389|ref|XP_011650958.1| (PREDICTED: uncharacterized protein LOC101202733 [Cucumis sativus]) HSP 1 Score: 167.9 bits (424), Expect = 1.4e-38 Identity = 77/90 (85.56%), Postives = 85/90 (94.44%), Query Frame = 1
BLAST of CmaCh06G013750 vs. NCBI nr
Match: gi|700201813|gb|KGN56946.1| (hypothetical protein Csa_3G146320 [Cucumis sativus]) HSP 1 Score: 167.9 bits (424), Expect = 1.4e-38 Identity = 77/90 (85.56%), Postives = 85/90 (94.44%), Query Frame = 1
BLAST of CmaCh06G013750 vs. NCBI nr
Match: gi|955347208|ref|XP_014618850.1| (PREDICTED: VAN3-binding protein-like isoform X1 [Glycine max]) HSP 1 Score: 156.4 bits (394), Expect = 4.4e-35 Identity = 69/86 (80.23%), Postives = 83/86 (96.51%), Query Frame = 1
BLAST of CmaCh06G013750 vs. NCBI nr
Match: gi|571484520|ref|XP_006589584.1| (PREDICTED: VAN3-binding protein-like isoform X2 [Glycine max]) HSP 1 Score: 156.4 bits (394), Expect = 4.4e-35 Identity = 69/86 (80.23%), Postives = 83/86 (96.51%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |