CmaCh06G012260 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G012260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Descriptioncytochrome B5 isoform D
LocationCma_Chr06 : 8175526 .. 8176820 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGCTATCTAGGTCAATTGTATAGACTTTTAATTCCAATTTTAAATTCTCTTCTTTTAATAAAAAAAAAAAATATTAAAAATGCTCACCAACCTTTTATTTGTTCTAAAAAAAAATACATTTAAATATTTTAAAATTTCAATAATATCTTTCCACTTTAAAAAATATGTAAAAAAACTGGAAAATAAAAATAGTATTTTCGAGATAAAATGGAAGGTTAAAAATATTTTTATTAATTTAGCTTAATCATGTTTCAATCATAATTTTAAATTTCATAAAATTATAAGTTAAATATAAAATTCAAATACTCAACTCGTCATTTTCACAATTTCAAAAACAAAATTTGACAGTTTTAAAAATTCAATGTTTGTGACTTATAATTACATCAATTAAAACTCTTAAATTTTTAAATAATTGATTCACTTACAAAAGTTCAAAAGATCAGATCGAACGTTACCATCAAAATTTCAAAATTAAAATTTATAGTTATTAATTTAAAACTTCAATTGATATAATCTAAAAGTTTAGATATATATATATATATATGGTCCCAAAAATGGGGTTATAATGGATCTTAGAGATGGTGTCCGTGTTTTTGCACGTTGTTGCCAACCAATTGTGACCACTTTTGATTGGGTTTACATTAGTTTTTTGCCTTTCAAACAAAAACTATCGTCATTCCATCTCACCTACTACCGAATCCCAATTTTTTTTTTTTTTTTTTTGTAGTTGACATCAAAATCTTTCCGTGAGCTTAATTTCTCGTATCAGTTATATATATATATATATATAGTATATAGTTGTTTTACATTCGGTTTCCATCCTTGTTTTGTAGCCCAAAAGTTCCTTCTCTCTGCCCCCTCAATTCGCTTCAATTCGATCGACGAACCCGATTCGAGCATATGGGTAGCGGAGAAAAGGTCTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATATATATATATATAATCCATTTCTCTTCTTCTTCTTGTTCTTCTGGATCTATGATTTTTCCGTTTTACTCGCGGATTCTGCGAGTTTTTGGGTGGATTTTGGTTCTTGTTGTGGCGGTGGAGTTCGGCGTTGGTTTGGTTTTGTTTGAGATTTCAGATTTGTTTTGTTTTGTTTTCAGATTTTGCATTCTAATAGAGTATTGAACTGTTTAGATCTGTAGTTTCTGGACAGGATTTTATGATCTATTTGTTGTCTGTAATTCAACCTAATGGCTCTTGCTTGTAGCTACAGTGGTGA

mRNA sequence

ATGGTTGGCTATCTAGTTGACATCAAAATCTTTCCCCCAAAAGTTCCTTCTCTCTGCCCCCTCAATTCGCTTCAATTCGATCGACGAACCCGATTCGAGCATATGGGTAGCGGAGAAAAGGTCTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGCTACAGTGGTGA

Coding sequence (CDS)

ATGGTTGGCTATCTAGTTGACATCAAAATCTTTCCCCCAAAAGTTCCTTCTCTCTGCCCCCTCAATTCGCTTCAATTCGATCGACGAACCCGATTCGAGCATATGGGTAGCGGAGAAAAGGTCTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGCTACAGTGGTGA

Protein sequence

MVGYLVDIKIFPPKVPSLCPLNSLQFDRRTRFEHMGSGEKVFTLKEVAEHNNHKDCWLIISGKLQW
Homology
[Close]
BLAST of CmaCh06G012260 vs. Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-06
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 

Query: 35 MGSGEKVFTLKEVAEHNNHKDCWLIISGKL 65
          MG   KVFTL EV++HNN KDCWL+ISGK+
Sbjct: 1  MGGETKVFTLAEVSQHNNAKDCWLVISGKV 30

[Close]
BLAST of CmaCh06G012260 vs. Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-06
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1 

Query: 35 MGSGEKVFTLKEVAEHNNHKDCWLIISGKL 65
          MG   KVFTL EV+ HNN KDCWLIISGK+
Sbjct: 1  MGGQSKVFTLAEVSNHNNAKDCWLIISGKV 30

[Close]
BLAST of CmaCh06G012260 vs. TrEMBL
Match: A0A0A0L7Y9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G131950 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-09
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 

Query: 35 MGSGEKVFTLKEVAEHNNHKDCWLIISGKL 65
          MGSGEKVFTLKEVAEHNNHKDCWLIISGK+
Sbjct: 1  MGSGEKVFTLKEVAEHNNHKDCWLIISGKV 30

[Close]
BLAST of CmaCh06G012260 vs. TAIR10
Match: AT2G32720.1 (AT2G32720.1 cytochrome B5 isoform B)

HSP 1 Score: 47.0 bits (110), Expect = 5.3e-06
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 1 

Query: 35 MGSGEKVFTLKEVAEHNNHKDCWLIISGKL 65
          MG   K+FTL EV+EHN   DCW++I+GK+
Sbjct: 1  MGDEAKIFTLSEVSEHNQAHDCWIVINGKV 30

[Close]
BLAST of CmaCh06G012260 vs. TAIR10
Match: AT5G48810.1 (AT5G48810.1 cytochrome B5 isoform D)

HSP 1 Score: 46.6 bits (109), Expect = 6.9e-06
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 1 

Query: 35 MGSGEKVFTLKEVAEHNNHKDCWLIISGKL 65
          MG   KVFTL EV++H++ KDCW++I GK+
Sbjct: 1  MGGDGKVFTLSEVSQHSSAKDCWIVIDGKV 30

[Close]
BLAST of CmaCh06G012260 vs. NCBI nr
Match: gi|449432422|ref|XP_004133998.1| (PREDICTED: cytochrome b5 isoform B-like [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-12
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 13 PKVPSLCPLNSLQFDRRTRFEHMGSGEKVFTLKEVAEHNNHKDCWLIISGKL 65
          P  P    LN +Q D   +F  MGSGEKVFTLKEVAEHNNHKDCWLIISGK+
Sbjct: 46 PTFPFPLLLNRIQSDPSIQFHVMGSGEKVFTLKEVAEHNNHKDCWLIISGKV 97

[Close]
BLAST of CmaCh06G012260 vs. NCBI nr
Match: gi|659075854|ref|XP_008438367.1| (PREDICTED: cytochrome b5 isoform B-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-09
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 

Query: 35 MGSGEKVFTLKEVAEHNNHKDCWLIISGKL 65
          MGSGEKVFTLKEVAEHNNHKDCWLIISGK+
Sbjct: 1  MGSGEKVFTLKEVAEHNNHKDCWLIISGKV 30

[Close]
BLAST of CmaCh06G012260 vs. NCBI nr
Match: gi|700201609|gb|KGN56742.1| (hypothetical protein Csa_3G131950 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-09
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 

Query: 35 MGSGEKVFTLKEVAEHNNHKDCWLIISGKL 65
          MGSGEKVFTLKEVAEHNNHKDCWLIISGK+
Sbjct: 1  MGSGEKVFTLKEVAEHNNHKDCWLIISGKV 30

The following BLAST results are available for this feature:
BLAST of CmaCh06G012260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYB5_TOBAC2.2e-0670.00Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC2.2e-0673.33Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1[more]
BLAST of CmaCh06G012260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7Y9_CUCSA4.4e-0996.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G131950 PE=3 SV=1[more]
BLAST of CmaCh06G012260 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32720.15.3e-0656.67 cytochrome B5 isoform B[more]
AT5G48810.16.9e-0656.67 cytochrome B5 isoform D[more]
BLAST of CmaCh06G012260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432422|ref|XP_004133998.1|7.9e-1269.23PREDICTED: cytochrome b5 isoform B-like [Cucumis sativus][more]
gi|659075854|ref|XP_008438367.1|6.3e-0996.67PREDICTED: cytochrome b5 isoform B-like [Cucumis melo][more]
gi|700201609|gb|KGN56742.1|6.3e-0996.67hypothetical protein Csa_3G131950 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001199Cyt_B5-like_heme/steroid-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043447 alkane biosynthetic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G012260.1CmaCh06G012260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001199Cytochrome b5-like heme/steroid binding domainGENE3DG3DSA:3.10.120.10coord: 38..63
score: 8.
IPR001199Cytochrome b5-like heme/steroid binding domainunknownSSF55856Cytochrome b5-like heme/steroid binding domaincoord: 39..63
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh06G012260CmoCh06G012560Cucurbita moschata (Rifu)cmacmoB834
CmaCh06G012260Lsi05G018330Bottle gourd (USVL1VR-Ls)cmalsiB762
CmaCh06G012260Cp4.1LG08g02720Cucurbita pepo (Zucchini)cmacpeB851
CmaCh06G012260MELO3C006316.2Melon (DHL92) v3.6.1cmamedB874
CmaCh06G012260CsaV3_3G011020Cucumber (Chinese Long) v3cmacucB0981
CmaCh06G012260Cla97C05G084020Watermelon (97103) v2cmawmbB863
CmaCh06G012260Bhi01G000170Wax gourdcmawgoB1020
CmaCh06G012260CsGy3G010980Cucumber (Gy14) v2cgybcmaB445
CmaCh06G012260Carg06289Silver-seed gourdcarcmaB1324
CmaCh06G012260Carg24759Silver-seed gourdcarcmaB0235
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G012260Watermelon (97103) v2cmawmbB856
CmaCh06G012260Watermelon (97103) v2cmawmbB865
CmaCh06G012260Wax gourdcmawgoB1007
CmaCh06G012260Cucumber (Gy14) v1cgycmaB0727
CmaCh06G012260Cucurbita moschata (Rifu)cmacmoB797
CmaCh06G012260Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G012260Cucurbita moschata (Rifu)cmacmoB837
CmaCh06G012260Wild cucumber (PI 183967)cmacpiB826
CmaCh06G012260Cucumber (Chinese Long) v2cmacuB814
CmaCh06G012260Melon (DHL92) v3.5.1cmameB763
CmaCh06G012260Watermelon (Charleston Gray)cmawcgB737
CmaCh06G012260Watermelon (97103) v1cmawmB798
CmaCh06G012260Cucurbita pepo (Zucchini)cmacpeB837
CmaCh06G012260Bottle gourd (USVL1VR-Ls)cmalsiB764
CmaCh06G012260Cucumber (Gy14) v2cgybcmaB427
CmaCh06G012260Melon (DHL92) v3.6.1cmamedB863
CmaCh06G012260Silver-seed gourdcarcmaB0236
CmaCh06G012260Silver-seed gourdcarcmaB1325
CmaCh06G012260Silver-seed gourdcarcmaB1494
CmaCh06G012260Cucumber (Chinese Long) v3cmacucB0965