CmaCh06G010780 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G010780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr06 : 7260115 .. 7261039 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTTACATATCCTCCCCTTCCTATGCCTGTTTTGATCCTGACCCCAGATTCAGAATCAACGGCTACTATGTCTTCTGCTCGGACATCTTCGATTCCACCCGACATCTCACTCCCCAGTGCAATGACAGCACTTGTCGGGGAAACGCACGTGAGCCTTCTGATTACCAATTGCTTAGTTGGCCATCCAAATCTTATGCCATACTCGTCCCAGCCGCTCTTGACAGCTACACAATCGTCTCCAGATATTATGTAACAATCCTCAATTCTAACATTTGTGCAGGAATCTGCAGAATAAAGTGAGTCATTGGTATTGAAAGACGTATACGTTTTGAGAAAGTTGGTTTGGGATACGAACCGGGGTTGATGCCATCGGTATTCGGGGATCGAACGGGAGCGATAATCGTGATCCCTTGAATAAGAACATTGCTGTAGAACATTTGCAAGTGAATCAAATCATGTAGTGTTGGATTTCTGTACATATTTCTCTATGGAATAACTAATTGATTATACCTGCTGTAAACAGGATGAACATTCCAAGCTGGAGAATTCAGCAGGGTCAGATTCGATATCTGTATGTTGCTGGAATACATGATCTCGATCAAGTATGGTCGGGTGTACTTAAGCTTATTCTGATGAAACAGCTGCCACCAGCGATCACCTTGACCATCAATGGTGCCATTGTTTCCTGATGTACATTAGGTGAAACTCAAACGTTCAGACACCGATCAAGAAAAATGAGACAAGCTCCAACAGAGGTACGCTTACCTGTGATGACAACATCAGTGAGATTTGTTCCAAATATTAAACTGATGTACCGTCCCCCTGATGTGTCCCTTCCATGACCGTAGGATGGCAACGGTTCGACCACCGGCCATTCGTTCGGATCCTATTGAAGTAGTTGAAAATCAGTCTTAAGCTAT

mRNA sequence

ATGTCTTTTACATATCCTCCCCTTCCTATGCCTGTTTTGATCCTGACCCCAGATTCAGAATCAACGGCTACTATGTCTTCTGCTCGGACATCTTCGATTCCACCCGACATCTCACTCCCCAGTGCAATGACAGCACTTGTCGGGGAAACGCACGTGAGCCTTCTGATTACCAATTGCTTAGTTGGCCATCCAAATCTTATGCCATACTCGTCCCAGCCGCTCTTGACAGCTACACAATCGTCTCCAGATATTATGATGAACATTCCAAGCTGGAGAATTCAGCAGGGTCAGATTCGATATCTGTATGTTGCTGGAATACATGATCTCGATCAAGTATGGTCGGGTGTACTTAAGCTTATTCTGATGAAACAGCTGCCACCAGCGATCACCTTGACCATCAATGGTGCCATTGTTTCCTGATGTACATTAGGTGAAACTCAAACGTTCAGACACCGATCAAGAAAAATGAGACAAGCTCCAACAGAGGTACGCTTACCTGTGATGACAACATCAGTGAGATTTGTTCCAAATATTAAACTGATGTACCGTCCCCCTGATGTGTCCCTTCCATGACCGTAGGATGGCAACGGTTCGACCACCGGCCATTCGTTCGGATCCTATTGAAGTAGTTGAAAATCAGTCTTAAGCTAT

Coding sequence (CDS)

ATGTCTTTTACATATCCTCCCCTTCCTATGCCTGTTTTGATCCTGACCCCAGATTCAGAATCAACGGCTACTATGTCTTCTGCTCGGACATCTTCGATTCCACCCGACATCTCACTCCCCAGTGCAATGACAGCACTTGTCGGGGAAACGCACGTGAGCCTTCTGATTACCAATTGCTTAGTTGGCCATCCAAATCTTATGCCATACTCGTCCCAGCCGCTCTTGACAGCTACACAATCGTCTCCAGATATTATGATGAACATTCCAAGCTGGAGAATTCAGCAGGGTCAGATTCGATATCTGTATGTTGCTGGAATACATGATCTCGATCAAGTATGGTCGGGTGTACTTAAGCTTATTCTGATGAAACAGCTGCCACCAGCGATCACCTTGACCATCAATGGTGCCATTGTTTCCTGA

Protein sequence

MSFTYPPLPMPVLILTPDSESTATMSSARTSSIPPDISLPSAMTALVGETHVSLLITNCLVGHPNLMPYSSQPLLTATQSSPDIMMNIPSWRIQQGQIRYLYVAGIHDLDQVWSGVLKLILMKQLPPAITLTINGAIVS
Homology
[Close]
BLAST of CmaCh06G010780 vs. TrEMBL
Match: A0A0A9L2M0_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 16 TPDSESTATMSSARTSSIPPDISLPSAMTALVGETHVSLLITNCLVGHPNLMPYSSQPLL 75
          TPDSE TA MSSARTS +PPDISLPSA+TALVG+THV   IT C +G P  MPYSSQPLL
Sbjct: 3  TPDSELTAVMSSARTSWMPPDISLPSAITALVGDTHVRRRITMCWLGMPYAMPYSSQPLL 62

Query: 76 TATQSSPDIM 86
           ATQSSP+ M
Sbjct: 63 IATQSSPETM 72

[Close]
BLAST of CmaCh06G010780 vs. TrEMBL
Match: A0A0A9Q235_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-08
Identity = 43/80 (53.75%), Postives = 48/80 (60.00%), Query Frame = 1 

Query: 3  FTYPPLPMPVLILTPDSESTATMSSARTSSIPPDISLPSAMTALVGETHVSLLITNCLVG 62
          FTYPP P  VLIL P  E T    SARTS +PPDISLP A+ A    + V LL+    +G
Sbjct: 17 FTYPPRPGAVLILIPCRELTTRRPSARTSDMPPDISLPKAIPAPPLVSPVMLLMLILELG 76

Query: 63 HPNLMPYSSQPLLTATQSSP 83
            N MPYSS PLL    SSP
Sbjct: 77 CANEMPYSSHPLLMTITSSP 96

[Close]
BLAST of CmaCh06G010780 vs. TrEMBL
Match: A0A0A9VHP0_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-08
Identity = 43/80 (53.75%), Postives = 48/80 (60.00%), Query Frame = 1 

Query: 3  FTYPPLPMPVLILTPDSESTATMSSARTSSIPPDISLPSAMTALVGETHVSLLITNCLVG 62
          FTYPP P  VLIL P  E T    SARTS +PPDISLP A+ A    + V LL+    +G
Sbjct: 17 FTYPPRPGAVLILIPCRELTMRRPSARTSDMPPDISLPKAIPAPPLVSPVMLLMLILELG 76

Query: 63 HPNLMPYSSQPLLTATQSSP 83
            N MPYSS PLL    SSP
Sbjct: 77 CANEMPYSSHPLLMTITSSP 96

[Close]
BLAST of CmaCh06G010780 vs. TrEMBL
Match: A0A0A9KSR6_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 16 TPDSESTATMSSARTSSIPPDISLPSAMTALVGETHVSLLITNCLVGHP 65
          TPDSE  A MSSARTS +PPDISLPSA+TALVG+THV   IT C +G P
Sbjct: 3  TPDSELMAVMSSARTSWMPPDISLPSAITALVGDTHVRRRITMCWLGIP 51

The following BLAST results are available for this feature:
BLAST of CmaCh06G010780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh06G010780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9L2M0_ARUDO1.9e-1774.29Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9Q235_ARUDO2.7e-0853.75Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9VHP0_ARUDO3.5e-0853.75Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9KSR6_ARUDO1.0e-0771.43Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of CmaCh06G010780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh06G010780 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G010780.1CmaCh06G010780.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G010780Cucurbita pepo (Zucchini)cmacpeB833
CmaCh06G010780Cucurbita pepo (Zucchini)cmacpeB854
CmaCh06G010780Bottle gourd (USVL1VR-Ls)cmalsiB758
CmaCh06G010780Cucumber (Gy14) v2cgybcmaB427
CmaCh06G010780Cucumber (Gy14) v2cgybcmaB442
CmaCh06G010780Melon (DHL92) v3.6.1cmamedB863
CmaCh06G010780Melon (DHL92) v3.6.1cmamedB872
CmaCh06G010780Silver-seed gourdcarcmaB0535
CmaCh06G010780Silver-seed gourdcarcmaB0684
CmaCh06G010780Cucumber (Chinese Long) v3cmacucB0965
CmaCh06G010780Cucumber (Chinese Long) v3cmacucB0979
CmaCh06G010780Watermelon (97103) v2cmawmbB856
CmaCh06G010780Watermelon (97103) v2cmawmbB861
CmaCh06G010780Cucurbita maxima (Rimu)cmacmaB280
CmaCh06G010780Cucumber (Gy14) v1cgycmaB0723
CmaCh06G010780Cucumber (Gy14) v1cgycmaB0727
CmaCh06G010780Cucurbita moschata (Rifu)cmacmoB794
CmaCh06G010780Cucurbita moschata (Rifu)cmacmoB797
CmaCh06G010780Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G010780Wild cucumber (PI 183967)cmacpiB826
CmaCh06G010780Wild cucumber (PI 183967)cmacpiB841
CmaCh06G010780Cucumber (Chinese Long) v2cmacuB814
CmaCh06G010780Cucumber (Chinese Long) v2cmacuB828
CmaCh06G010780Melon (DHL92) v3.5.1cmameB763
CmaCh06G010780Melon (DHL92) v3.5.1cmameB769
CmaCh06G010780Watermelon (Charleston Gray)cmawcgB737
CmaCh06G010780Watermelon (Charleston Gray)cmawcgB740
CmaCh06G010780Watermelon (97103) v1cmawmB798
CmaCh06G010780Watermelon (97103) v1cmawmB802