CmaCh06G010060 (gene) Cucurbita maxima (Rimu)

NameCmaCh06G010060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTransducin family protein/WD-40 repeat protein
LocationCma_Chr06 : 6809978 .. 6810499 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTCTTTGATTCAGTTATTGCCTTGTAATTCCTTGGTGTGGTCAATTTTATCTTCTCAGACATCTACTGACGTAGGGGATGTATCCTTTGACAAGAAAAGGTCAGACAATTTCTTCTCTCGTTCAGTTACTACCCAATTGAATTTAAGTGGTCATGCTGGAAAAATCTTACACGTTGCTGTACATCCATACAACTGTGAGGTCAAAGTAGCTGCTTCTTTGGACTCTAATGGCTTGCTTCTTTTCTGGTCACTATCTAGTATCTCCACCTGTGTATTAGGCCCTCCAACACTTAATGGCTTGCTTCTTTTCTGGTCACTATCTAGTATCTCCACCTGTGTATTAGGCCCTCCAACACTTAATCATACCTGGGAACTTTGTGGAAAACTTGTAACTCAAGATTCATGCTCAAAATATACAAGTGTGCAGTGGGCACCATCAATATTGGATGAAGAACTGATTCTTCTGATGGGACATGCGAGAGGAAAGTGTGCAGTGGGCACCATCAATATTGGATGA

mRNA sequence

ATGTGTTCTTTGATTCAGTTATTGCCTTGTAATTCCTTGGTGTGGTCAATTTTATCTTCTCAGACATCTACTGACGTAGGGGATGTATCCTTTGACAAGAAAAGGTCAGACAATTTCTTCTCTCGTTCAGTTACTACCCAATTGAATTTAAGTGGTCATGCTGGAAAAATCTTACACGTTGCTGTACATCCATACAACTGTGAGGTCAAAGTAGCTGCTTCTTTGGACTCTAATGGCTTGCTTCTTTTCTGGTCACTATCTAGTATCTCCACCTGTGTATTAGGCCCTCCAACACTTAATGGCTTGCTTCTTTTCTGGTCACTATCTAGTATCTCCACCTGTGTATTAGGCCCTCCAACACTTAATCATACCTGGGAACTTTGTGGAAAACTTGTAACTCAAGATTCATGCTCAAAATATACAAGTGTGCAGTGGGCACCATCAATATTGGATGAAGAACTGATTCTTCTGATGGGACATGCGAGAGGAAAGTGTGCAGTGGGCACCATCAATATTGGATGA

Coding sequence (CDS)

ATGTGTTCTTTGATTCAGTTATTGCCTTGTAATTCCTTGGTGTGGTCAATTTTATCTTCTCAGACATCTACTGACGTAGGGGATGTATCCTTTGACAAGAAAAGGTCAGACAATTTCTTCTCTCGTTCAGTTACTACCCAATTGAATTTAAGTGGTCATGCTGGAAAAATCTTACACGTTGCTGTACATCCATACAACTGTGAGGTCAAAGTAGCTGCTTCTTTGGACTCTAATGGCTTGCTTCTTTTCTGGTCACTATCTAGTATCTCCACCTGTGTATTAGGCCCTCCAACACTTAATGGCTTGCTTCTTTTCTGGTCACTATCTAGTATCTCCACCTGTGTATTAGGCCCTCCAACACTTAATCATACCTGGGAACTTTGTGGAAAACTTGTAACTCAAGATTCATGCTCAAAATATACAAGTGTGCAGTGGGCACCATCAATATTGGATGAAGAACTGATTCTTCTGATGGGACATGCGAGAGGAAAGTGTGCAGTGGGCACCATCAATATTGGATGA

Protein sequence

MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHVAVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPTLNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARGKCAVGTINIG
BLAST of CmaCh06G010060 vs. TrEMBL
Match: A0A0A0L3T8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119460 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 9.2e-59
Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           +CSLIQLLPCNSLVWS+LS+ T TDVGD SFD+KR ++  S S ++QLNLSGHAGKILHV
Sbjct: 434 ICSLIQLLPCNSLVWSLLSAHTLTDVGDASFDQKRLESLSSCSFSSQLNLSGHAGKILHV 493

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           AVHPYNCEVK+AASLDS                      NGLLLFWSLSSIS C LG PT
Sbjct: 494 AVHPYNCEVKIAASLDS----------------------NGLLLFWSLSSISNCALGSPT 553

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 164
           L  TWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG
Sbjct: 554 LTPTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 574

BLAST of CmaCh06G010060 vs. TrEMBL
Match: M5XEZ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000021mg PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.3e-41
Identity = 92/163 (56.44%), Postives = 111/163 (68.10%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           +CS +QLLP NSLVWS L +QTS +  D+S +K  + N  S S    LNL GHAG+IL V
Sbjct: 427 LCSFVQLLPGNSLVWSQLYTQTSNNAEDISLNKSGTGNILSCSAGGLLNLDGHAGRILQV 486

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           AVHPY+CEV++A SLDS              C        GLLLFW  S+IS C+LG PT
Sbjct: 487 AVHPYSCEVELAVSLDS--------------C--------GLLLFWFFSTISNCILGRPT 546

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 164
           L  TWELCGKLVTQ SCSKYTS++WAPSI++E ++LLMGHA G
Sbjct: 547 LIPTWELCGKLVTQGSCSKYTSLRWAPSIVNEAVVLLMGHAGG 567

BLAST of CmaCh06G010060 vs. TrEMBL
Match: A0A072TN28_MEDTR (Transducin family protein/WD-40 repeat protein OS=Medicago truncatula GN=MTR_8g027425 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.2e-39
Identity = 88/163 (53.99%), Postives = 104/163 (63.80%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           +CSL+QLLPCNSLVWS    Q + D  + S D  ++D   S      LNL GH+GKIL V
Sbjct: 438 ICSLLQLLPCNSLVWSFFHIQETHDAVENSLDNGKTDAISSHLTGGSLNLDGHSGKILKV 497

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           ++HPY  E +VAASLDSNGLL+FWSLS+IS  +LG                  C    PT
Sbjct: 498 SIHPYTSEAQVAASLDSNGLLIFWSLSNISNSILG------------------C----PT 557

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 164
           L  TWELCGKL TQ SCS YTS+ WAPSILDE+L+  MGH RG
Sbjct: 558 LVPTWELCGKLATQHSCSMYTSLTWAPSILDEQLVFFMGHNRG 578

BLAST of CmaCh06G010060 vs. TrEMBL
Match: W9RDG9_9ROSA (DmX-like protein 1 OS=Morus notabilis GN=L484_023486 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.0e-38
Identity = 93/172 (54.07%), Postives = 111/172 (64.53%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           MCSLIQLLP NSL WS+L +QTS  + ++S +    +N  S      LNL GH GKIL V
Sbjct: 434 MCSLIQLLPSNSLAWSLLCTQTSGTIEELSVEHNLRENV-SCLPGGVLNLDGHTGKILQV 493

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           AVHP +CEV+ A SLDSNGLLLFWS+S+IS C+LG PTL                     
Sbjct: 494 AVHPCSCEVEFAVSLDSNGLLLFWSMSTISNCILGRPTLIP------------------- 553

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG-KCAVGTIN 172
              TWEL GKL T+ SCSKYTS++WAPSILD+EL+LL+GH  G  C V  IN
Sbjct: 554 ---TWELHGKLGTRVSCSKYTSLRWAPSILDQELVLLLGHVGGIDCFVVKIN 582

BLAST of CmaCh06G010060 vs. TrEMBL
Match: A0A0R0IZW5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G054500 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 87/163 (53.37%), Postives = 105/163 (64.42%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           +CS +QLLPCNSLVWS    QT  +  + S D   +DN  S      LNL GH+GKIL V
Sbjct: 428 ICSSLQLLPCNSLVWSNFRIQTIHNAVEDSNDNVNTDNISSHLTGGVLNLDGHSGKILKV 487

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           ++HP  C+V+ AASLDSNGLLLFWSLS+IS C+LG PTL                   PT
Sbjct: 488 SLHPCTCKVQFAASLDSNGLLLFWSLSNISNCILGCPTL------------------VPT 547

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 164
           +    ELCGKL TQDSCS YTS++WAPSIL ++L+  MGH RG
Sbjct: 548 M----ELCGKLATQDSCSLYTSLKWAPSILGDKLVFFMGHTRG 568

BLAST of CmaCh06G010060 vs. TAIR10
Match: AT2G46560.1 (AT2G46560.1 transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-17
Identity = 63/173 (36.42%), Postives = 80/173 (46.24%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           +CS I L P N++ WS L +  S D  D S +K          V   L L GH GKIL V
Sbjct: 433 ICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSSLLKCIDGKV---LYLDGHGGKILQV 492

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           A  P+ CE    ASLDSNGL++  S S      +  P         S++S          
Sbjct: 493 ASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPI--------SVAS---------- 552

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARGKCAVGTINIG 174
               W+ CG+L  Q+   KYTS+ WAPS L +E  LL+GH  G       N G
Sbjct: 553 ----WKPCGRLQNQEFRLKYTSLCWAPSSLKDERFLLVGHVGGVDCFSVRNCG 580

BLAST of CmaCh06G010060 vs. NCBI nr
Match: gi|659074931|ref|XP_008437873.1| (PREDICTED: uncharacterized protein LOC103483174 isoform X2 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 8.3e-61
Identity = 122/163 (74.85%), Postives = 131/163 (80.37%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           +CSLIQLLPCNSLVWS+LS+ T TDVGD SFD+KR ++ FS S ++QLNLSGHAGKILHV
Sbjct: 381 ICSLIQLLPCNSLVWSLLSAHTLTDVGDASFDQKRLESLFSCSSSSQLNLSGHAGKILHV 440

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           AVHPYNCEVK+AASLDS                      NGLLLFWSLSSIS CVLGPPT
Sbjct: 441 AVHPYNCEVKIAASLDS----------------------NGLLLFWSLSSISNCVLGPPT 500

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 164
           L  TWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG
Sbjct: 501 LTPTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 521

BLAST of CmaCh06G010060 vs. NCBI nr
Match: gi|659074929|ref|XP_008437872.1| (PREDICTED: uncharacterized protein LOC103483174 isoform X1 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 8.3e-61
Identity = 122/163 (74.85%), Postives = 131/163 (80.37%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           +CSLIQLLPCNSLVWS+LS+ T TDVGD SFD+KR ++ FS S ++QLNLSGHAGKILHV
Sbjct: 434 ICSLIQLLPCNSLVWSLLSAHTLTDVGDASFDQKRLESLFSCSSSSQLNLSGHAGKILHV 493

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           AVHPYNCEVK+AASLDS                      NGLLLFWSLSSIS CVLGPPT
Sbjct: 494 AVHPYNCEVKIAASLDS----------------------NGLLLFWSLSSISNCVLGPPT 553

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 164
           L  TWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG
Sbjct: 554 LTPTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 574

BLAST of CmaCh06G010060 vs. NCBI nr
Match: gi|449433024|ref|XP_004134298.1| (PREDICTED: uncharacterized protein LOC101204824 isoform X1 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-58
Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           +CSLIQLLPCNSLVWS+LS+ T TDVGD SFD+KR ++  S S ++QLNLSGHAGKILHV
Sbjct: 434 ICSLIQLLPCNSLVWSLLSAHTLTDVGDASFDQKRLESLSSCSFSSQLNLSGHAGKILHV 493

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           AVHPYNCEVK+AASLDS                      NGLLLFWSLSSIS C LG PT
Sbjct: 494 AVHPYNCEVKIAASLDS----------------------NGLLLFWSLSSISNCALGSPT 553

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 164
           L  TWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG
Sbjct: 554 LTPTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 574

BLAST of CmaCh06G010060 vs. NCBI nr
Match: gi|778676845|ref|XP_011650671.1| (PREDICTED: uncharacterized protein LOC101204824 isoform X2 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-58
Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           +CSLIQLLPCNSLVWS+LS+ T TDVGD SFD+KR ++  S S ++QLNLSGHAGKILHV
Sbjct: 381 ICSLIQLLPCNSLVWSLLSAHTLTDVGDASFDQKRLESLSSCSFSSQLNLSGHAGKILHV 440

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           AVHPYNCEVK+AASLDS                      NGLLLFWSLSSIS C LG PT
Sbjct: 441 AVHPYNCEVKIAASLDS----------------------NGLLLFWSLSSISNCALGSPT 500

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 164
           L  TWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG
Sbjct: 501 LTPTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 521

BLAST of CmaCh06G010060 vs. NCBI nr
Match: gi|645254617|ref|XP_008233121.1| (PREDICTED: uncharacterized protein LOC103332187 isoform X1 [Prunus mume])

HSP 1 Score: 179.1 bits (453), Expect = 6.6e-42
Identity = 91/163 (55.83%), Postives = 112/163 (68.71%), Query Frame = 1

Query: 1   MCSLIQLLPCNSLVWSILSSQTSTDVGDVSFDKKRSDNFFSRSVTTQLNLSGHAGKILHV 60
           +CS +QLLPCNSLVWS L +QTS +  D+S +K  ++N  + S    LNL GHAG+IL V
Sbjct: 427 LCSFVQLLPCNSLVWSQLYTQTSNNAEDISLNKSGTENILACSAGGLLNLDGHAGRILQV 486

Query: 61  AVHPYNCEVKVAASLDSNGLLLFWSLSSISTCVLGPPTLNGLLLFWSLSSISTCVLGPPT 120
           AVHPY+CEV++A SLDS              C        GLLLFW  S+IS C+LG PT
Sbjct: 487 AVHPYSCEVELAVSLDS--------------C--------GLLLFWFFSTISNCILGRPT 546

Query: 121 LNHTWELCGKLVTQDSCSKYTSVQWAPSILDEELILLMGHARG 164
           L  TWELCGKL TQ SCSKYTS++WAPSI++E ++LLMGHA G
Sbjct: 547 LIPTWELCGKLETQGSCSKYTSLRWAPSIVNEAVVLLMGHAGG 567

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3T8_CUCSA9.2e-5973.01Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119460 PE=4 SV=1[more]
M5XEZ2_PRUPE2.3e-4156.44Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000021mg PE=4 SV=1[more]
A0A072TN28_MEDTR6.2e-3953.99Transducin family protein/WD-40 repeat protein OS=Medicago truncatula GN=MTR_8g0... [more]
W9RDG9_9ROSA9.0e-3854.07DmX-like protein 1 OS=Morus notabilis GN=L484_023486 PE=4 SV=1[more]
A0A0R0IZW5_SOYBN3.4e-3753.37Uncharacterized protein OS=Glycine max GN=GLYMA_07G054500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G46560.12.1e-1736.42 transducin family protein / WD-40 repeat family protein[more]
Match NameE-valueIdentityDescription
gi|659074931|ref|XP_008437873.1|8.3e-6174.85PREDICTED: uncharacterized protein LOC103483174 isoform X2 [Cucumis melo][more]
gi|659074929|ref|XP_008437872.1|8.3e-6174.85PREDICTED: uncharacterized protein LOC103483174 isoform X1 [Cucumis melo][more]
gi|449433024|ref|XP_004134298.1|1.3e-5873.01PREDICTED: uncharacterized protein LOC101204824 isoform X1 [Cucumis sativus][more]
gi|778676845|ref|XP_011650671.1|1.3e-5873.01PREDICTED: uncharacterized protein LOC101204824 isoform X2 [Cucumis sativus][more]
gi|645254617|ref|XP_008233121.1|6.6e-4255.83PREDICTED: uncharacterized protein LOC103332187 isoform X1 [Prunus mume][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G010060.1CmaCh06G010060.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None