CmaCh06G009880 (gene) Cucurbita maxima (Rimu)

NameCmaCh06G009880
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionHomeobox-leucine zipper protein 1
LocationCma_Chr06 : 6693870 .. 6695475 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATCCCCCCGCCAAGAATGAAATTCGGGTCTCTCAAGGACCCCACAAGTCTTGGATTAAATCATTCACTCCCATACCCCACCTGGTTTCGGGATCTTAAGCAGCATGCTAGACGACGACGACAACGACAACCAATATTCTCCTCTGGCATCCATGAGAAAGAAGAGCATGGACAGAACAAGGTTGCGCGAAGAACAGATCAAGTCACTTGAATGAATTTTCGAGTGAGAGCCAAGGCTTGAGCCCACAAAGAAGTTGCAGCTGGCCTCGCAGCTGGGGTTGCATCCACGCTAGGTTTCAATATGGTTTCAGAACAAGCGAGACTACAGCGTTTTACTTGCTAATTACAACACTCTGGCTTCCCGCTTTCAAGCTCTCAACAACGAAAACCAAGCGTTGGCTACACAGGTATTGACATTCTGCCTTCGCTTTTCTTGGACTTTCTTTCTTGGAAAAGGTTTTACAATCAGCGAGCACACCGCACGCACGATCATAGGTAGTAATGGCCAGCCTAGTAAGTCCTTTAGGAAGCCTTCTTAGAAATGCCCTCGTTTTGGCTTCGTCTTGTGACATTAAACCGTGACATATGATTTTGGTACATAGCAACGTGAGAGATTGAGCAAAGAGCTTCAATGGGTGCCTTCTTCATAATCTAGGGGTCTAATGTAGCGTGAGCCAGGGAGCTTTTCTTTGATTCCACCTCGGGGAATCCGGGCTTGATTGTTTTGTGTTATGGTCAGTAAAGCTTGTTAGGTAAATGAGAGAGGAATGAACGAGATAGAGCGCTAGAGCTCCTTTCGTGATAATGCTAGATGGAAAAGAAGGCAAAATAGTTTTCGAGTATGTTTGATGGTGGCATCAAGTGATGTTTTTTCAATCCTAGAGTAGCATAAAAAAAATCTCCAAAGCTACAAAAAAAAAAAAAAAAAAAAAGACGTGGAAGTTCTCGACTGAACTAGGTGTGAACTATTTGAAGGAAATCTCTCCCTAGTAGACACGTTTTAAAAACCTTGAGAGAAAGCCCGAAATGAAAAGTCCAAAAAAGACAATATATGCTAATGGTGAACTTGAGCTGTTACCGTAATTACCTCGCTGGTAAGCAAGAAAGAACTCATTTTGGACACAACCCATAAATTGATCTTCATTCAACTTCATATATCTGGTGAGTCGATGGGTGTTAAATCAAGCACAGAAAGTTGAATATTGTAGAACAAAAGACAAAGGAAAACAGGATAATGAATGAACAAGACACAAATGAACTGTTTTTAAATTATCTACTCAGAAATTAGCAAGAGGGCAATGGCAGAGAAACCTACGTAATATCAATGTCTTCAACATAAAGTGAGTAATTGAAAATCTCGTGGCATCTTTAGAGAAACCTACGTAATATCAATGTCTTCAACATAAAGTGAGTAATTGAAAATCTCGTGGCATCTTTGGTAGGAAGCTAATGATTACTGCTTTTTTCCATAGAATTGCAGATAAAATGCAACGCCCATAATCAGCAGGGGAACCAGAATTTGCAGTAGTGTTAGCAAGGATCCTGAAGATTCAGCCGATGACGTCGTTGCTTTTACCGATTGGGATGCAGCTAGTCGATAA

mRNA sequence

ATGGGTATCCCCCCGCCAAGAATGAAATTCGGGTCTCTCAAGGACCCCACAAGTCTTGGATTAAATCATTCACTCCCATACCCCACCTGGTTTCGGGATCTTAAGCAGCATGCTAGACGACGACGACAACGACAACCAATATTCTCCTCTGGCATCCATGAGAAAGAAGAGCATGGACAGAACAAGGTTGCGCGAAGAACAGATCAAAACAAGCGAGACTACAGCGTTTTACTTGCTAATTACAACACTCTGGCTTCCCGCTTTCAAGCTCTCAACAACGAAAACCAAGCGTTGGCTACACAGAAATTAGCAAGAGGGCAATGGCAGAGAAACCTACGTAATATCAATGTCTTCAACATAAAGGGAACCAGAATTTGCAGTAGTGTTAGCAAGGATCCTGAAGATTCAGCCGATGACGTCGTTGCTTTTACCGATTGGGATGCAGCTAGTCGATAA

Coding sequence (CDS)

ATGGGTATCCCCCCGCCAAGAATGAAATTCGGGTCTCTCAAGGACCCCACAAGTCTTGGATTAAATCATTCACTCCCATACCCCACCTGGTTTCGGGATCTTAAGCAGCATGCTAGACGACGACGACAACGACAACCAATATTCTCCTCTGGCATCCATGAGAAAGAAGAGCATGGACAGAACAAGGTTGCGCGAAGAACAGATCAAAACAAGCGAGACTACAGCGTTTTACTTGCTAATTACAACACTCTGGCTTCCCGCTTTCAAGCTCTCAACAACGAAAACCAAGCGTTGGCTACACAGAAATTAGCAAGAGGGCAATGGCAGAGAAACCTACGTAATATCAATGTCTTCAACATAAAGGGAACCAGAATTTGCAGTAGTGTTAGCAAGGATCCTGAAGATTCAGCCGATGACGTCGTTGCTTTTACCGATTGGGATGCAGCTAGTCGATAA

Protein sequence

MGIPPPRMKFGSLKDPTSLGLNHSLPYPTWFRDLKQHARRRRQRQPIFSSGIHEKEEHGQNKVARRTDQNKRDYSVLLANYNTLASRFQALNNENQALATQKLARGQWQRNLRNINVFNIKGTRICSSVSKDPEDSADDVVAFTDWDAASR
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003106Leu_zip_homeo
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G009880.1CmaCh06G009880.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 72..101
score: 1.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh06G009880CmaCh00G004840Cucurbita maxima (Rimu)cmacmaB022
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G009880Cucurbita maxima (Rimu)cmacmaB023
CmaCh06G009880Cucurbita maxima (Rimu)cmacmaB281
CmaCh06G009880Cucumber (Gy14) v1cgycmaB0725
CmaCh06G009880Cucumber (Gy14) v1cgycmaB0728
CmaCh06G009880Cucurbita moschata (Rifu)cmacmoB795
CmaCh06G009880Cucurbita moschata (Rifu)cmacmoB799
CmaCh06G009880Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G009880Cucurbita moschata (Rifu)cmacmoB832
CmaCh06G009880Wild cucumber (PI 183967)cmacpiB830
CmaCh06G009880Wild cucumber (PI 183967)cmacpiB843
CmaCh06G009880Cucumber (Chinese Long) v2cmacuB818
CmaCh06G009880Cucumber (Chinese Long) v2cmacuB830
CmaCh06G009880Melon (DHL92) v3.5.1cmameB766
CmaCh06G009880Melon (DHL92) v3.5.1cmameB771
CmaCh06G009880Watermelon (Charleston Gray)cmawcgB738
CmaCh06G009880Watermelon (Charleston Gray)cmawcgB742
CmaCh06G009880Watermelon (97103) v1cmawmB803
CmaCh06G009880Watermelon (97103) v1cmawmB799
CmaCh06G009880Cucurbita pepo (Zucchini)cmacpeB834
CmaCh06G009880Cucurbita pepo (Zucchini)cmacpeB839
CmaCh06G009880Cucurbita pepo (Zucchini)cmacpeB848
CmaCh06G009880Bottle gourd (USVL1VR-Ls)cmalsiB760
CmaCh06G009880Bottle gourd (USVL1VR-Ls)cmalsiB770
CmaCh06G009880Cucumber (Gy14) v2cgybcmaB430
CmaCh06G009880Cucumber (Gy14) v2cgybcmaB443
CmaCh06G009880Melon (DHL92) v3.6.1cmamedB863
CmaCh06G009880Melon (DHL92) v3.6.1cmamedB873
CmaCh06G009880Silver-seed gourdcarcmaB0163
CmaCh06G009880Silver-seed gourdcarcmaB0176
CmaCh06G009880Silver-seed gourdcarcmaB0177
CmaCh06G009880Silver-seed gourdcarcmaB1376
CmaCh06G009880Cucumber (Chinese Long) v3cmacucB0965
CmaCh06G009880Cucumber (Chinese Long) v3cmacucB0980
CmaCh06G009880Watermelon (97103) v2cmawmbB857
CmaCh06G009880Watermelon (97103) v2cmawmbB859
CmaCh06G009880Watermelon (97103) v2cmawmbB862
CmaCh06G009880Wax gourdcmawgoB1011
CmaCh06G009880Wax gourdcmawgoB1021