CmaCh06G009590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G009590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	NADH dehydrogenase (Ubiquinone)s
Location	Cma_Chr06 : 6494072 .. 6494296 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATAAGCCTTTGGGATCGACTGGAGAGTTCTTCAGGAGGACAGACGAGTGGAGGAAGCATCCGATGCTCACCAATCAGTTCCGACATGCCACTCCTGGCCTCGGCATCGCCCTCGTTGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTATATAACAGGATCCATTCTCCTTCTTCCTCTCACCATCACCATGCTGATGCTTCCTCCGCCACCCATTAA

mRNA sequence

ATGGCGAATAAGCCTTTGGGATCGACTGGAGAGTTCTTCAGGAGGACAGACGAGTGGAGGAAGCATCCGATGCTCACCAATCAGTTCCGACATGCCACTCCTGGCCTCGGCATCGCCCTCGTTGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTATATAACAGGATCCATTCTCCTTCTTCCTCTCACCATCACCATGCTGATGCTTCCTCCGCCACCCATTAA

Coding sequence (CDS)

ATGGCGAATAAGCCTTTGGGATCGACTGGAGAGTTCTTCAGGAGGACAGACGAGTGGAGGAAGCATCCGATGCTCACCAATCAGTTCCGACATGCCACTCCTGGCCTCGGCATCGCCCTCGTTGCTTTCGGCATCTACCTTGTCGGCGAGCAAGTATATAACAGGATCCATTCTCCTTCTTCCTCTCACCATCACCATGCTGATGCTTCCTCCGCCACCCATTAA

Protein sequence

MANKPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSHHHHADASSATH

Homology

[Close]

BLAST of CmaCh06G009590 vs. Swiss-Prot
Match: NDB3B_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis thaliana GN=At1g14450 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.9e-23
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLG+TGEFFRR DEWRKHPML+NQ RHA PGLGI + AF +YLVGEQ+YN+  +PS S 
Sbjct: 3  KPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGLGIGVAAFCVYLVGEQIYNKALAPSKSS 62

Query: 64 HHHADASSATH 75
          HHH + ++ +H
Sbjct: 63 HHHQEQTAPSH 73

[Close]

BLAST of CmaCh06G009590 vs. Swiss-Prot
Match: NDB3A_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A OS=Arabidopsis thaliana GN=At2g02510 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.0e-20
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLG+TGEFFRR DEWRKHPML+NQ RHA PG+GI + AF +YLVGEQ+Y+++ +PSS  
Sbjct: 3  KPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGIGIGVGAFCVYLVGEQIYSKLMAPSSQS 62

Query: 64 HH 66
           H
Sbjct: 63 SH 64

[Close]

BLAST of CmaCh06G009590 vs. TrEMBL
Match: A0A0A0KR92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528700 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-33
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 1  MANKPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPS 60
          MANKPLGSTGEFFRR DEWRKHPML+NQFRHATPGLGIALVAFGIYLVGEQVYNRI+SPS
Sbjct: 1  MANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS 60

Query: 61 SSHHHHADASSATH 75
          SSHHHH++ASSATH
Sbjct: 61 SSHHHHSNASSATH 74

[Close]

BLAST of CmaCh06G009590 vs. TrEMBL
Match: A0A0B0NDD3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_04523 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.0e-27
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLGSTGEFF+R DEWRKHPML+NQ RHATPGLGIALVAFGIYLVGEQVYNRI++PSSSH
Sbjct: 3  KPLGSTGEFFKRRDEWRKHPMLSNQLRHATPGLGIALVAFGIYLVGEQVYNRIYAPSSSH 62

Query: 64 HHHADASSATH 75
          HH   +SS +H
Sbjct: 63 HHQQQSSSHSH 73

[Close]

BLAST of CmaCh06G009590 vs. TrEMBL
Match: A0A0D2QHQ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G167700 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.0e-27
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLGSTGEFF+R DEWRKHPML+NQ RHATPGLGIALVAFGIYLVGEQVYNRI++PSSSH
Sbjct: 3  KPLGSTGEFFKRRDEWRKHPMLSNQLRHATPGLGIALVAFGIYLVGEQVYNRIYAPSSSH 62

Query: 64 HHHADASSATH 75
          HH   +SS +H
Sbjct: 63 HHQQQSSSHSH 73

[Close]

BLAST of CmaCh06G009590 vs. TrEMBL
Match: B9S045_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1297890 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.7e-25
Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLG+TGEFF+R DEWRKHPML+NQFRHATPGLGIALVAFGIYLVGEQVY+++++PSSSH
Sbjct: 3  KPLGTTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYDKLYAPSSSH 62

Query: 64 HHHADASSATH 75
          HH    SS++H
Sbjct: 63 HH----SSSSH 69

[Close]

BLAST of CmaCh06G009590 vs. TrEMBL
Match: A9PCK4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23900g PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLGSTGEFFRR DEWRKHPMLTNQFRHATPGLGIALVAFG+YLVGEQVYN+I++PSS H
Sbjct: 3  KPLGSTGEFFRRRDEWRKHPMLTNQFRHATPGLGIALVAFGVYLVGEQVYNKIYAPSSDH 62

Query: 64 ---HHH 67
             H H
Sbjct: 63 SSSHSH 68

[Close]

BLAST of CmaCh06G009590 vs. TAIR10
Match: AT1G14450.1 (AT1G14450.1 NADH dehydrogenase (ubiquinone)s)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-24
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLG+TGEFFRR DEWRKHPML+NQ RHA PGLGI + AF +YLVGEQ+YN+  +PS S 
Sbjct: 3  KPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGLGIGVAAFCVYLVGEQIYNKALAPSKSS 62

Query: 64 HHHADASSATH 75
          HHH + ++ +H
Sbjct: 63 HHHQEQTAPSH 73

[Close]

BLAST of CmaCh06G009590 vs. TAIR10
Match: AT2G02510.1 (AT2G02510.1 NADH dehydrogenase (ubiquinone)s)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-21
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLG+TGEFFRR DEWRKHPML+NQ RHA PG+GI + AF +YLVGEQ+Y+++ +PSS  
Sbjct: 3  KPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGIGIGVGAFCVYLVGEQIYSKLMAPSSQS 62

Query: 64 HH 66
           H
Sbjct: 63 SH 64

[Close]

BLAST of CmaCh06G009590 vs. NCBI nr
Match: gi|659121279|ref|XP_008460580.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 151.4 bits (381), Expect = 6.3e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 1  MANKPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPS 60
          MANKPLGSTGEFFRR DEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRI+SPS
Sbjct: 1  MANKPLGSTGEFFRRRDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS 60

Query: 61 SSHHHHADASSATH 75
          SSHHHH+DASSATH
Sbjct: 61 SSHHHHSDASSATH 74

[Close]

BLAST of CmaCh06G009590 vs. NCBI nr
Match: gi|778703796|ref|XP_011655428.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 147.9 bits (372), Expect = 7.0e-33
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 1  MANKPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPS 60
          MANKPLGSTGEFFRR DEWRKHPML+NQFRHATPGLGIALVAFGIYLVGEQVYNRI+SPS
Sbjct: 1  MANKPLGSTGEFFRRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYNRINSPS 60

Query: 61 SSHHHHADASSATH 75
          SSHHHH++ASSATH
Sbjct: 61 SSHHHHSNASSATH 74

[Close]

BLAST of CmaCh06G009590 vs. NCBI nr
Match: gi|823224383|ref|XP_012444958.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-27
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLGSTGEFF+R DEWRKHPML+NQ RHATPGLGIALVAFGIYLVGEQVYNRI++PSSSH
Sbjct: 3  KPLGSTGEFFKRRDEWRKHPMLSNQLRHATPGLGIALVAFGIYLVGEQVYNRIYAPSSSH 62

Query: 64 HHHADASSATH 75
          HH   +SS +H
Sbjct: 63 HHQQQSSSHSH 73

[Close]

BLAST of CmaCh06G009590 vs. NCBI nr
Match: gi|255556661|ref|XP_002519364.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 121.7 bits (304), Expect = 5.4e-25
Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLG+TGEFF+R DEWRKHPML+NQFRHATPGLGIALVAFGIYLVGEQVY+++++PSSSH
Sbjct: 3  KPLGTTGEFFKRRDEWRKHPMLSNQFRHATPGLGIALVAFGIYLVGEQVYDKLYAPSSSH 62

Query: 64 HHHADASSATH 75
          HH    SS++H
Sbjct: 63 HH----SSSSH 69

[Close]

BLAST of CmaCh06G009590 vs. NCBI nr
Match: gi|566168345|ref|XP_006385098.1| (hypothetical protein POPTR_0004s23900g [Populus trichocarpa])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 4  KPLGSTGEFFRRTDEWRKHPMLTNQFRHATPGLGIALVAFGIYLVGEQVYNRIHSPSSSH 63
          KPLGSTGEFFRR DEWRKHPMLTNQFRHATPGLGIALVAFG+YLVGEQVYN+I++PSS H
Sbjct: 3  KPLGSTGEFFRRRDEWRKHPMLTNQFRHATPGLGIALVAFGVYLVGEQVYNKIYAPSSDH 62

Query: 64 ---HHH 67
             H H
Sbjct: 63 SSSHSH 68

The following BLAST results are available for this feature:

BLAST of CmaCh06G009590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDB3B_ARATH	2.9e-23	66.20	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis tha...	[more]
NDB3A_ARATH	4.0e-20	67.74	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A OS=Arabidopsis tha...	[more]

BLAST of CmaCh06G009590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR92_CUCSA	4.9e-33	93.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528700 PE=4 SV=1	[more]
A0A0B0NDD3_GOSAR	4.0e-27	83.10	Uncharacterized protein OS=Gossypium arboreum GN=F383_04523 PE=4 SV=1	[more]
A0A0D2QHQ5_GOSRA	4.0e-27	83.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G167700 PE=4 SV=1	[more]
B9S045_RICCO	3.7e-25	78.87	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1297890 PE=4 SV=1	[more]
A9PCK4_POPTR	1.1e-24	84.85	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23900g PE=2 SV=1	[more]

BLAST of CmaCh06G009590 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14450.1	1.7e-24	66.20	NADH dehydrogenase (ubiquinone)s	[more]
AT2G02510.1	2.2e-21	67.74	NADH dehydrogenase (ubiquinone)s	[more]

BLAST of CmaCh06G009590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121279\|ref\|XP_008460580.1\|	6.3e-34	95.95	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|778703796\|ref\|XP_011655428.1\|	7.0e-33	93.24	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|823224383\|ref\|XP_012444958.1\|	5.7e-27	83.10	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|255556661\|ref\|XP_002519364.1\|	5.4e-25	78.87	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|566168345\|ref\|XP_006385098.1\|	1.6e-24	84.85	hypothetical protein POPTR_0004s23900g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012576	NDUFB3

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion
GO:0005747	mitochondrial respiratory chain complex I

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009590.1	CmaCh06G009590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012576	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	PFAM	PF08122	NDUF_B12	coord: 15..66 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G009590	Cp4.1LG08g00380	Cucurbita pepo (Zucchini)	cmacpeB855
CmaCh06G009590	Carg24175	Silver-seed gourd	carcmaB0128

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G009590	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G009590	Watermelon (97103) v2	cmawmbB857
CmaCh06G009590	Wax gourd	cmawgoB1017
CmaCh06G009590	Cucurbita maxima (Rimu)	cmacmaB287
CmaCh06G009590	Cucumber (Gy14) v1	cgycmaB0728
CmaCh06G009590	Cucurbita moschata (Rifu)	cmacmoB799
CmaCh06G009590	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G009590	Wild cucumber (PI 183967)	cmacpiB830
CmaCh06G009590	Cucumber (Chinese Long) v2	cmacuB818
CmaCh06G009590	Melon (DHL92) v3.5.1	cmameB766
CmaCh06G009590	Watermelon (Charleston Gray)	cmawcgB738
CmaCh06G009590	Watermelon (97103) v1	cmawmB799
CmaCh06G009590	Cucurbita pepo (Zucchini)	cmacpeB839
CmaCh06G009590	Bottle gourd (USVL1VR-Ls)	cmalsiB766
CmaCh06G009590	Cucumber (Gy14) v2	cgybcmaB430
CmaCh06G009590	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G009590	Silver-seed gourd	carcmaB0177