CmaCh06G009010 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G009010
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCma_Chr06 : 5804189 .. 5806116 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGAAGGTGGATCTGTTGTGGACTATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAGCATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTTTCGTAATCAGCAATTTCCGAGAATCTGATAAACTAAAGTTTGATGAAATTCGAGATGTAGTTCTCAGCGAAAGTATTCGTAAACGAGAACTTGGAAATTCATCTGGGAGTGCTCTTAGTGTTGACCAACGGGGAATAAGTAAATCAAAGGCCCCAAACAATGAGTGATCAAAATCAAGGAACCGATAAAAATCTCCAAACAAACCAAATGTAAAGTGATGGTGTTGTGGAGAAAAAAGTCACTTTCGGGCAGATTGTACAAAGAGGAAGCATAATCACAAATCAGAGAATGACGATGATTCGATACATCAGCAAAAGACATTGGAGATTCTCTAATCTTCAACGTGGACAGTCCGATTGAATTCTGGATTTTGGATTCGGGTGCATCTTTTCATTCGTCTCCAAATAAAGAGTTGTTTCGAAATTTTAAGTCTGGAAGTTTCAAGAAGGTGTATCTTGCCAACAACAAAGATTTGAAGATCGAAGGAAAATGGGATGTCTGCATAAAAACTCCGGCAGGAAATCAGTGGACATTAAAGGATGTCAGATATATTCTTAGTCGATGTCTGCATAAAAACTCCGGCAGGAAATCAGTGGACATTAAAGGATGTCAGATATATTCTTAGTCTCAAGAAGAACCTGATCTCTATTGGTCAGTTGGATAGCACAGGTTATGCAACAAAGTTTGGTAAGAGTTCATGGAAAATTGTGAAGAGTGTTATGGTGGTAGCACGTGGCACAAAATCTGGAACTTTATACACCACTGTGGAAAATTGTGAAGAGTGTTATGGTGGTAGCACGTGGCACAAAATCTGGAACTTTATACACCACTGTAGGGTGTATGAACAGAGTTGCTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGTCATATGAATGTTAAAGGAATGAAGATGTCAGCTGCAAAAGAAGTTTTGGAACTTCTGAAATCTGTTGATATGAGTCCTTGTGTGAACTGTGTTATGAGCAAACAGAAACGAGTTAGCTTCATAAAGACTGTCAGAGAATTGAAGAAAAGTATCGGGACAACGAAGCAAGTGGGAGGTGAGGTTGAGTTGCAGAACAATTCACAGAGTGATGTTGTAGAAGATACTCAAGAAACTTCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCGGATATTCAAGAAACTCCTGAGACTCTTGCTGAGGAACCAGAAAGATTCACATAGTGATGTTGTAGCGGATATTCAAGAAACTCCTGAGACTCTTGCTGAGGAACCAGAGGTGAAGCAAGTTGGAGTTGAGGTTGAGGTTGAGGTTGAGTTGCTGAAAGATTCACTTAATGATGTTGTAGCTGATACTCAAGAAACTCCTAAGACTGTTGCTGAAGAACCGGAAGAGGAGCAAGTAACACCTAAGCAGGTGTTGAAAAGATCATCCAGAGCCATCAAATTACCAGATAGGTATGTACCTTCTTTACACTATCGGTTGGTGACTGATGTAGGGAAATGAAAGCCCCTTGATGAGACCCTACAGTTGGAGGATACAACTATGTGGGAGCAAGTTACGGATGATGGGATGTCTAGGCTTCAGAAATGCGTTGCTCTTTCATCTGCTGAGGTTGAGTACGTGACATTAGCTGAAACTGGAAAGAAGATGATATGGATGATAGACTATCTAGAAGAATTAGGCAATAAGAAGCACGAGAAGATTCTTCAGGTCGATAGTTAG

mRNA sequence

ATGTCTGAAGGTGGATCTGTTGTGGACTATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAGCATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTTTCGTAATCAGCAATTTCCGAGAATCTGATAAACTAAAGTTTGATGAAATTCGAGATGTAGTTCTCAGCGAAAGTATTCGTAAACGAGAACTTGGAAATTCATCTGGGAGTGCTCTTAGTGTTGACCAACGGGGAATAAGGTGTATGAACAGAGTTGCTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGTCATATGAATGTTAAAGGAATGAAGATGTCAGCTGCAAAAGAAGTTTTGGAACTTCTGAAATCTGTTGATATGAGTCCTTGTGTGAACTGTGTTATGAGCAAACAGAAACGAGTTAGCTTCATAAAGACTGTCAGAGAATTGAAGAAAAGTATCGGGACAACGAAGCAAGTGGGAGGTGAGGTTGAGTTGCAGAACAATTCACAGAGTGATGTTGTAGAAGATACTCAAGAAACTTCTAAGACTGTTGCTGAGAAACCAGAGAAAGATTCACATAGTGATGTTGTAGCGGATATTCAAGAAACTCCTGAGACTCTTGCTGAGGAACCAGAGGTGAAGCAAGTTGGAGTTGAGGTTGAGGTTGAGGTTGAGTTGCTGAAAGATTCACTTAATGATGTTGTAGCTGATACTCAAGAAACTCCTAAGACTGTTGCTGAAGAACCGGAAGAGGAGCAAGTAACACCTAAGCAGGTGTTGAAAAGATCATCCAGAGCCATCAAATTACCAGATAGGCTTCAGAAATGCGTTGCTCTTTCATCTGCTGAGGTTGAGTACGTGACATTAGCTGAAACTGGAAAGAAGATGATATGGATGATAGACTATCTAGAAGAATTAGGCAATAAGAAGCACGAGAAGATTCTTCAGGTCGATAGTTAG

Coding sequence (CDS)

ATGTCTGAAGGTGGATCTGTTGTGGACTATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAGCATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTTTCGTAATCAGCAATTTCCGAGAATCTGATAAACTAAAGTTTGATGAAATTCGAGATGTAGTTCTCAGCGAAAGTATTCGTAAACGAGAACTTGGAAATTCATCTGGGAGTGCTCTTAGTGTTGACCAACGGGGAATAAGGTGTATGAACAGAGTTGCTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGTCATATGAATGTTAAAGGAATGAAGATGTCAGCTGCAAAAGAAGTTTTGGAACTTCTGAAATCTGTTGATATGAGTCCTTGTGTGAACTGTGTTATGAGCAAACAGAAACGAGTTAGCTTCATAAAGACTGTCAGAGAATTGAAGAAAAGTATCGGGACAACGAAGCAAGTGGGAGGTGAGGTTGAGTTGCAGAACAATTCACAGAGTGATGTTGTAGAAGATACTCAAGAAACTTCTAAGACTGTTGCTGAGAAACCAGAGAAAGATTCACATAGTGATGTTGTAGCGGATATTCAAGAAACTCCTGAGACTCTTGCTGAGGAACCAGAGGTGAAGCAAGTTGGAGTTGAGGTTGAGGTTGAGGTTGAGTTGCTGAAAGATTCACTTAATGATGTTGTAGCTGATACTCAAGAAACTCCTAAGACTGTTGCTGAAGAACCGGAAGAGGAGCAAGTAACACCTAAGCAGGTGTTGAAAAGATCATCCAGAGCCATCAAATTACCAGATAGGCTTCAGAAATGCGTTGCTCTTTCATCTGCTGAGGTTGAGTACGTGACATTAGCTGAAACTGGAAAGAAGATGATATGGATGATAGACTATCTAGAAGAATTAGGCAATAAGAAGCACGAGAAGATTCTTCAGGTCGATAGTTAG

Protein sequence

MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDKLKFDEIRDVVLSESIRKRELGNSSGSALSVDQRGIRCMNRVAVAESASNSSIWHNRLGHMNVKGMKMSAAKEVLELLKSVDMSPCVNCVMSKQKRVSFIKTVRELKKSIGTTKQVGGEVELQNNSQSDVVEDTQETSKTVAEKPEKDSHSDVVADIQETPETLAEEPEVKQVGVEVEVEVELLKDSLNDVVADTQETPKTVAEEPEEEQVTPKQVLKRSSRAIKLPDRLQKCVALSSAEVEYVTLAETGKKMIWMIDYLEELGNKKHEKILQVDS
Homology
[Close]
BLAST of CmaCh06G009010 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.7e-07
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 279  SSRAIKLPDRLQKCVALSSAEVEYVTLAETGKKMIWMIDYLEELGNKKHEKILQVDS 336
            S  AI    +LQKCVALS+ E EY+   ETGK+MIW+  +L+ELG  + E ++  DS
Sbjct: 1201 SGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDS 1257

[Close]
BLAST of CmaCh06G009010 vs. TrEMBL
Match: K4BR07_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.3e-29
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 1 

Query: 1   MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDK 60
           M E GSV D++NEFN+IVSQL+SV+IN EDEIKALILMSSLPESWDTVV  IS+   S+ 
Sbjct: 66  MPENGSVSDHVNEFNIIVSQLNSVDINSEDEIKALILMSSLPESWDTVVATISSSHGSEN 125

Query: 61  LKFDEIRDVVLSESIRKRELGNSSGSALSVDQRG 95
           LKFDEIRDVVLSESIRKRE+G+SSG+ALSVD+RG
Sbjct: 126 LKFDEIRDVVLSESIRKREVGDSSGNALSVDRRG 159

[Close]
BLAST of CmaCh06G009010 vs. TrEMBL
Match: A0A151SZQ0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_015728 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.2e-19
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1 

Query: 1   MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDK 60
           M E  SV D++N+FN + +QL+SV I F+DE+KALIL+SSLP+SWD VV  +S     +K
Sbjct: 88  MEERKSVADHLNDFNQLTTQLASVNIEFDDEVKALILLSSLPDSWDVVVTSVSTSSGKEK 147

Query: 61  LKFDEIRDVVLSESIRKRELGNSSGSALSVDQRG 95
           +KFD IRD++L+E  R+ + G SSGSAL  + RG
Sbjct: 148 MKFDNIRDMMLNEETRRNQAGGSSGSALHTESRG 181

[Close]
BLAST of CmaCh06G009010 vs. TrEMBL
Match: A0A151SWA3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_014492 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.2e-19
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1 

Query: 1   MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDK 60
           M E  SV D++N+FN + +QL+SV I F+DE+KALIL+SSLP+SWD VV  +S     +K
Sbjct: 107 MEERKSVADHLNDFNQLTTQLASVNIEFDDEVKALILLSSLPDSWDVVVTSVSTSSGKEK 166

Query: 61  LKFDEIRDVVLSESIRKRELGNSSGSALSVDQRG 95
           +KFD IRD++L+E  R+ + G SSGSAL  + RG
Sbjct: 167 MKFDNIRDMMLNEETRRNQAGGSSGSALHTESRG 200

[Close]
BLAST of CmaCh06G009010 vs. TrEMBL
Match: A0A151QPR6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047055 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.2e-19
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1 

Query: 1   MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDK 60
           M E  SV D++N+FN + +QL+SV I F+DE+KALIL+SSLP+SWD VV  +S     +K
Sbjct: 88  MEERKSVADHLNDFNQLTTQLASVNIEFDDEVKALILLSSLPDSWDVVVTSVSTSSGKEK 147

Query: 61  LKFDEIRDVVLSESIRKRELGNSSGSALSVDQRG 95
           +KFD IRD++L+E  R+ + G SSGSAL  + RG
Sbjct: 148 MKFDNIRDMMLNEETRRNQAGGSSGSALHTESRG 181

[Close]
BLAST of CmaCh06G009010 vs. TrEMBL
Match: A0A0S3RPR0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G256700 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1 

Query: 1   MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDK 60
           M EG SV  +I++FN I++QL+S++I F+DEIKAL+L+SSLPESW   V + SNF  + K
Sbjct: 221 MDEGNSVTHHISKFNTIIAQLASMQITFDDEIKALLLLSSLPESWGATVTIGSNFASNSK 280

Query: 61  LKFDEIRDVVLSESIRKRELGNS----SGSALSVDQRG 95
           LKFD I D++LSE + +R L  S    SGSALSV+ RG
Sbjct: 281 LKFDNILDLILSEDVHRRSLMESSRSNSGSALSVENRG 318

[Close]
BLAST of CmaCh06G009010 vs. NCBI nr
Match: gi|672202993|ref|XP_008778529.1| (PREDICTED: uncharacterized protein LOC103698312 [Phoenix dactylifera])

HSP 1 Score: 109.8 bits (273), Expect = 9.5e-21
Identity = 67/124 (54.03%), Postives = 84/124 (67.74%), Query Frame = 1 

Query: 1   MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDK 60
           MSEG SV D+INEFN+I SQLSSVEINFEDE+ ALIL+S LPESW   V  +S+   S+K
Sbjct: 337 MSEGFSVRDHINEFNLITSQLSSVEINFEDEVHALILLSFLPESWGATVTAVSSSCSSNK 396

Query: 61  LKFDEIRDVVLSESIRKRELGNSSGSALSVDQRGIRCMNRVAVAESASNSSIWHNRLGHM 120
           LKF+EIR+++LSE IR+RE G +SG  L+  +   R M R   +E+ S S    NR    
Sbjct: 397 LKFEEIRNLILSEDIRRRESGVNSGLVLNTSKGRGRTMQR---SENRSRSK--SNRRSKS 455

Query: 121 NVKG 125
             KG
Sbjct: 457 RSKG 455

[Close]
BLAST of CmaCh06G009010 vs. NCBI nr
Match: gi|1012349084|gb|KYP60275.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 103.2 bits (256), Expect = 8.9e-19
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1 

Query: 1   MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDK 60
           M E  SV D++N+FN + +QL+SV I F+DE+KALIL+SSLP+SWD VV  +S     +K
Sbjct: 88  MEERKSVADHLNDFNQLTTQLASVNIEFDDEVKALILLSSLPDSWDVVVTSVSTSSGKEK 147

Query: 61  LKFDEIRDVVLSESIRKRELGNSSGSALSVDQRG 95
           +KFD IRD++L+E  R+ + G SSGSAL  + RG
Sbjct: 148 MKFDNIRDMMLNEETRRNQAGGSSGSALHTESRG 181

[Close]
BLAST of CmaCh06G009010 vs. NCBI nr
Match: gi|1012319164|gb|KYP32301.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 103.2 bits (256), Expect = 8.9e-19
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1 

Query: 1   MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDK 60
           M E  SV D++N+FN + +QL+SV I F+DE+KALIL+SSLP+SWD VV  +S     +K
Sbjct: 88  MEERKSVADHLNDFNQLTTQLASVNIEFDDEVKALILLSSLPDSWDVVVTSVSTSSGKEK 147

Query: 61  LKFDEIRDVVLSESIRKRELGNSSGSALSVDQRG 95
           +KFD IRD++L+E  R+ + G SSGSAL  + RG
Sbjct: 148 MKFDNIRDMMLNEETRRNQAGGSSGSALHTESRG 181

[Close]
BLAST of CmaCh06G009010 vs. NCBI nr
Match: gi|1012347873|gb|KYP59064.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 103.2 bits (256), Expect = 8.9e-19
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1 

Query: 1   MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDK 60
           M E  SV D++N+FN + +QL+SV I F+DE+KALIL+SSLP+SWD VV  +S     +K
Sbjct: 107 MEERKSVADHLNDFNQLTTQLASVNIEFDDEVKALILLSSLPDSWDVVVTSVSTSSGKEK 166

Query: 61  LKFDEIRDVVLSESIRKRELGNSSGSALSVDQRG 95
           +KFD IRD++L+E  R+ + G SSGSAL  + RG
Sbjct: 167 MKFDNIRDMMLNEETRRNQAGGSSGSALHTESRG 200

[Close]
BLAST of CmaCh06G009010 vs. NCBI nr
Match: gi|965667048|dbj|BAT82536.1| (hypothetical protein VIGAN_03256700 [Vigna angularis var. angularis])

HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1 

Query: 1   MSEGGSVVDYINEFNMIVSQLSSVEINFEDEIKALILMSSLPESWDTVVFVISNFRESDK 60
           M EG SV  +I++FN I++QL+S++I F+DEIKAL+L+SSLPESW   V + SNF  + K
Sbjct: 221 MDEGNSVTHHISKFNTIIAQLASMQITFDDEIKALLLLSSLPESWGATVTIGSNFASNSK 280

Query: 61  LKFDEIRDVVLSESIRKRELGNS----SGSALSVDQRG 95
           LKFD I D++LSE + +R L  S    SGSALSV+ RG
Sbjct: 281 LKFDNILDLILSEDVHRRSLMESSRSNSGSALSVENRG 318

The following BLAST results are available for this feature:
BLAST of CmaCh06G009010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC2.7e-0749.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of CmaCh06G009010 vs. TrEMBL
Match NameE-valueIdentityDescription
K4BR07_SOLLC2.3e-2977.66Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A151SZQ0_CAJCA6.2e-1953.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151SWA3_CAJCA6.2e-1953.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151QPR6_CAJCA6.2e-1953.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A0S3RPR0_PHAAN1.1e-1855.10Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G256700 PE=... [more]
BLAST of CmaCh06G009010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh06G009010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|672202993|ref|XP_008778529.1|9.5e-2154.03PREDICTED: uncharacterized protein LOC103698312 [Phoenix dactylifera][more]
gi|1012349084|gb|KYP60275.1|8.9e-1953.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012319164|gb|KYP32301.1|8.9e-1953.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012347873|gb|KYP59064.1|8.9e-1953.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|965667048|dbj|BAT82536.1|1.5e-1855.10hypothetical protein VIGAN_03256700 [Vigna angularis var. angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025724GAG-pre-integrase_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046914 transition metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G009010.1CmaCh06G009010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 99..153
score: 2.0
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 1..96
score: 4.4
NoneNo IPR availablePANTHERPTHR34676:SF1SUBFAMILY NOT NAMEDcoord: 1..96
score: 4.4
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..79
score: 7.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G009010Cucurbita maxima (Rimu)cmacmaB290
CmaCh06G009010Cucumber (Gy14) v1cgycmaB0944
CmaCh06G009010Cucurbita moschata (Rifu)cmacmoB802
CmaCh06G009010Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G009010Wild cucumber (PI 183967)cmacpiB844
CmaCh06G009010Cucumber (Chinese Long) v2cmacuB831
CmaCh06G009010Melon (DHL92) v3.5.1cmameB753
CmaCh06G009010Watermelon (Charleston Gray)cmawcgB723
CmaCh06G009010Watermelon (97103) v1cmawmB786
CmaCh06G009010Cucurbita pepo (Zucchini)cmacpeB841
CmaCh06G009010Cucurbita pepo (Zucchini)cmacpeB855
CmaCh06G009010Bottle gourd (USVL1VR-Ls)cmalsiB753
CmaCh06G009010Cucumber (Gy14) v2cgybcmaB444
CmaCh06G009010Melon (DHL92) v3.6.1cmamedB853
CmaCh06G009010Silver-seed gourdcarcmaB0447
CmaCh06G009010Cucumber (Chinese Long) v3cmacucB0965
CmaCh06G009010Cucumber (Chinese Long) v3cmacucB0982
CmaCh06G009010Watermelon (97103) v2cmawmbB841
CmaCh06G009010Wax gourdcmawgoB0994