CmaCh06G008890 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G008890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description50S ribosomal protein L16, chloroplastic
LocationCma_Chr06 : 5625610 .. 5626303 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGGTAGAATACTTTATGAAATGAGTGGAGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAATCCCTCCAACTTTCTAAAATAGTCCCTACGGGTACGTATATTTTCAGACAAACTCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAACTGAGATAA

mRNA sequence

ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGACAAACTCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAACTGAGATAA

Coding sequence (CDS)

ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGACAAACTCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAACTGAGATAA

Protein sequence

MGSGKGSPEYWVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARKLR
Homology
[Close]
BLAST of CmaCh06G008890 vs. Swiss-Prot
Match: RK16_CITSI (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-18
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 66  WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 117

[Close]
BLAST of CmaCh06G008890 vs. Swiss-Prot
Match: RK16_CUCSA (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-18
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]
BLAST of CmaCh06G008890 vs. Swiss-Prot
Match: RK16_GOSHI (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.3e-18
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VT+RPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIFP-DKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]
BLAST of CmaCh06G008890 vs. Swiss-Prot
Match: RK16_GOSBA (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense GN=rpl16 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.3e-18
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VT+RPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIFP-DKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]
BLAST of CmaCh06G008890 vs. Swiss-Prot
Match: RK16_CARPA (50S ribosomal protein L16, chloroplastic OS=Carica papaya GN=rpl16 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.3e-18
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIAR+
Sbjct: 65  WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARR 116

[Close]
BLAST of CmaCh06G008890 vs. TrEMBL
Match: C6L8A4_CITNA (50S ribosomal protein L16, chloroplastic (Fragment) OS=Citrus natsudaidai PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11 WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
          WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 47 WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 98

[Close]
BLAST of CmaCh06G008890 vs. TrEMBL
Match: X2EZK1_LAGSI (50S ribosomal protein L16, chloroplastic OS=Lagenaria siceraria GN=rpl16 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]
BLAST of CmaCh06G008890 vs. TrEMBL
Match: W8E710_9ROSI (Ribosomal protein L16 OS=Cucumis hystrix GN=rpl16 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]
BLAST of CmaCh06G008890 vs. TrEMBL
Match: C6L8A6_9ROSI (50S ribosomal protein L16, chloroplastic (Fragment) OS=Citrus hassaku PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11 WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
          WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 47 WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 98

[Close]
BLAST of CmaCh06G008890 vs. TrEMBL
Match: C6L8A3_CITRE (50S ribosomal protein L16, chloroplastic (Fragment) OS=Citrus reticulata PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11 WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
          WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 47 WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 98

[Close]
BLAST of CmaCh06G008890 vs. TAIR10
Match: ATCG00790.1 (ATCG00790.1 ribosomal protein L16)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-17
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VT+RP ETRMGSGKGSPEYWVAVVK G+ILYEM GV ENIARK
Sbjct: 65  WVRIFP-DKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARK 116

[Close]
BLAST of CmaCh06G008890 vs. TAIR10
Match: AT2G28830.1 (AT2G28830.1 PLANT U-BOX 12)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-13
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 17  SDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           +DK VT+RP ETRMG GKG+P +WVAVVK G+I+YEM GV+E +AR+
Sbjct: 897 ADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVARE 943

[Close]
BLAST of CmaCh06G008890 vs. TAIR10
Match: ATMG00080.1 (ATMG00080.1 ribosomal protein L16)

HSP 1 Score: 52.8 bits (125), Expect = 9.5e-08
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 2   GSGKGSPEYWVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIA 61
           G  + + + WV V  +D  +T +PTE RMG GKG+P  W+A V +G+I +EM GV+   A
Sbjct: 100 GQFRRNGKIWVRVF-ADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANA 159

Query: 62  RK 64
           R+
Sbjct: 160 RQ 160

[Close]
BLAST of CmaCh06G008890 vs. NCBI nr
Match: gi|115432841|gb|ABI97454.1| (ribosomal protein L16 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 63  WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 114

[Close]
BLAST of CmaCh06G008890 vs. NCBI nr
Match: gi|68164841|ref|YP_247637.1| (ribosomal protein L16 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]
BLAST of CmaCh06G008890 vs. NCBI nr
Match: gi|595645222|gb|AHM88685.1| (ribosomal protein L16 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]
BLAST of CmaCh06G008890 vs. NCBI nr
Match: gi|254998368|dbj|BAH88945.1| (ribosomal protein L16, partial (chloroplast) [Citrus x paradisi])

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11 WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
          WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 48 WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 99

[Close]
BLAST of CmaCh06G008890 vs. NCBI nr
Match: gi|700210847|gb|KGN65943.1| (50S ribosomal protein L16, chloroplastic [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 59  WVRIFP-DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 110

The following BLAST results are available for this feature:
BLAST of CmaCh06G008890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK16_CITSI1.9e-1886.7950S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1[more]
RK16_CUCSA1.9e-1886.7950S ribosomal protein L16, chloroplastic OS=Cucumis sativus GN=rpl16 PE=3 SV=1[more]
RK16_GOSHI4.3e-1884.9150S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum GN=rpl16 PE=3 SV=... [more]
RK16_GOSBA4.3e-1884.9150S ribosomal protein L16, chloroplastic OS=Gossypium barbadense GN=rpl16 PE=3 S... [more]
RK16_CARPA4.3e-1884.9150S ribosomal protein L16, chloroplastic OS=Carica papaya GN=rpl16 PE=3 SV=1[more]
BLAST of CmaCh06G008890 vs. TrEMBL
Match NameE-valueIdentityDescription
C6L8A4_CITNA2.1e-1686.7950S ribosomal protein L16, chloroplastic (Fragment) OS=Citrus natsudaidai PE=3 S... [more]
X2EZK1_LAGSI2.1e-1686.7950S ribosomal protein L16, chloroplastic OS=Lagenaria siceraria GN=rpl16 PE=3 SV... [more]
W8E710_9ROSI2.1e-1686.79Ribosomal protein L16 OS=Cucumis hystrix GN=rpl16 PE=3 SV=1[more]
C6L8A6_9ROSI2.1e-1686.7950S ribosomal protein L16, chloroplastic (Fragment) OS=Citrus hassaku PE=3 SV=1[more]
C6L8A3_CITRE2.1e-1686.7950S ribosomal protein L16, chloroplastic (Fragment) OS=Citrus reticulata PE=3 SV... [more]
BLAST of CmaCh06G008890 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00790.12.3e-1777.36ATCG00790.1 ribosomal protein L16[more]
AT2G28830.11.5e-1365.96 PLANT U-BOX 12[more]
ATMG00080.19.5e-0843.55ATMG00080.1 ribosomal protein L16[more]
BLAST of CmaCh06G008890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|115432841|gb|ABI97454.1|3.1e-1686.79ribosomal protein L16 [Cucumis sativus][more]
gi|68164841|ref|YP_247637.1|3.1e-1686.79ribosomal protein L16 [Cucumis sativus][more]
gi|595645222|gb|AHM88685.1|3.1e-1686.79ribosomal protein L16 (chloroplast) [Lagenaria siceraria][more]
gi|254998368|dbj|BAH88945.1|3.1e-1686.79ribosomal protein L16, partial (chloroplast) [Citrus x paradisi][more]
gi|700210847|gb|KGN65943.1|3.1e-1686.7950S ribosomal protein L16, chloroplastic [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000114Ribosomal_L16
IPR016180Ribosomal_L10e/L16
IPR020798Ribosomal_L16_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G008890.1CmaCh06G008890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 35..64
score: 5.3E-15coord: 5..34
score: 5.3
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 18..62
score: 3.3
IPR016180Ribosomal protein L10e/L16GENE3DG3DSA:3.90.1170.10coord: 1..19
score: 2.4E-5coord: 20..63
score: 5.5
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 18..63
score: 5.3
IPR016180Ribosomal protein L10e/L16unknownSSF54686Ribosomal protein L16p/L10ecoord: 1..19
score: 2.75E-5coord: 18..63
score: 1.03
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 29..40
scor
NoneNo IPR availablePANTHERPTHR12220:SF14SUBFAMILY NOT NAMEDcoord: 18..62
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G008890Cucumber (Chinese Long) v3cmacucB0982
CmaCh06G008890Watermelon (97103) v2cmawmbB841
CmaCh06G008890Wax gourdcmawgoB0980
CmaCh06G008890Wax gourdcmawgoB0994
CmaCh06G008890Cucurbita maxima (Rimu)cmacmaB290
CmaCh06G008890Cucumber (Gy14) v1cgycmaB0944
CmaCh06G008890Cucurbita moschata (Rifu)cmacmoB802
CmaCh06G008890Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G008890Wild cucumber (PI 183967)cmacpiB844
CmaCh06G008890Cucumber (Chinese Long) v2cmacuB831
CmaCh06G008890Melon (DHL92) v3.5.1cmameB753
CmaCh06G008890Watermelon (Charleston Gray)cmawcgB723
CmaCh06G008890Watermelon (97103) v1cmawmB786
CmaCh06G008890Cucurbita pepo (Zucchini)cmacpeB841
CmaCh06G008890Bottle gourd (USVL1VR-Ls)cmalsiB753
CmaCh06G008890Cucumber (Gy14) v2cgybcmaB444
CmaCh06G008890Melon (DHL92) v3.6.1cmamedB853
CmaCh06G008890Silver-seed gourdcarcmaB0447