CmaCh06G008880 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G008880
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerase subunit beta''
Location	Cma_Chr06 : 5615944 .. 5619093 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTATTGTAGATACGTCATGGTATGAGATTATTTGGACTACAAGATCAAACCAGATTCTAGAGCCAGATTTAATAAGTAATAGTCAACCAATTGGAATTCATTTATCTAACATATTTTTTCTTCCATTTGAACTAATTTCGATCATTCTTTTAGCTGCTTTGATCGGCGCAATTGTCGTCGCTAGTAATAAATCTTTAGTTAGAAATAGCATAAATTAAACTTTGTTCTATGTTATCCACACATTCCCCTTCAATTCTATTTGAAGATTGTTTTTGTCTAAAATAAAAATTCTTTTATTCGATTGATTACCAATATATTCCCTTGTTGTGTACTTTTTTTTTTTTTGTCAATTGAATTGAATCTATTACATTTTTGTTCATATTGAAATGAATCGGAATTGATAAGGAGTTGGTCAATCATGCTCGAACATGTACTTATTCTAAGTGCCTATTTATTTTCTATCGGTACTATGGATTGATCACGAGCCGAAATATGGTTAGGGCCCTTATGTGTCTTGAGCTTATACTGAATGCAGTTAATATGAATTTTGTAACATTTTCTGATTTGTTTGATAGTAGCCAATTAAAAGGGAATATTTTCTCAATTTTTGTTATAGCTTTTGCTGTCGCCCATATTCTCCGGATAAAAGTCAGAATATGGTTGGGGTTTAACAAAACATGTGCCAATTACAAAAAAATGCTTTTTTATTAGGTACCCTTTCTCTTTACGGTATTCCACCCAAAATAAACAAAAGAATGAGAAAAAAGTATTTAAATCAGAGTCTAATTGATTTCATAATCTATGAATCTATTTGACATTAATTAGAATTCTATACATGACTTTGAATTTACTCAAGTTGTACGAGGAGAAAACTTCTTATACGGTTCTGGGGGTATTGTTAATTTACATCTATCCCAATGAGCCGTTTATCGAATCATTGCAATTGATGTTCGAGCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGATTTTTATGATCCGATAAAGAATCAAACTTATTTAAATGTTCATGCTATTCTATATTTCCTTGAAAAGAGTGCTCAACCTACAGGAACTATTCATGATATTTTAAACAAGGCAGGGGTTTTTACCGAACTTCACCTTAATCAATAACCGAAATTCCATTAATGAAATAAAAAAAAAGAGGGTGAGGATAACTATATAGCTTTGGCTAACCTTTTCTTTATTATTTTCCCCCTCTCTTGTTTTATTCATACTACACTTATTACCTTAAAATTCCGTCTTCGATAATGACAAAAATATATTTTTGCATTTTTACCCAATTTGGGAAGCAGCTTCCATTGATGAATGGTTATACAATGATGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTTTTCCGGGCCTGCTCATATGGTACGTAATCTTCTGGTATCTCACTCAGCTAAGTAATTATATGACACCGGTATAAATTTAGTTCTCTCCGGTTCAACTAGGACCATAGGTTCTGAATTTCTACGTGAATCAAGATCGAGAAAAGGAAGTTTTCCAATCGTTGACTCAAACCTCAAACCTATTGTCGAACCCCACTCTGCGTAATATGGAGGTACTTATGGCGGAACGGGCTGATTGTCTTTCACAATAAAGTGATAGATGGAACTACCATTAAACGACTTATTAGCATATTAATAGATCACTTCGGAATGACATATACATCACACATCCTGAATCAAATAAAGACTCTAGGGTTCCAGCAGGCCATTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGTTGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTTTCCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATAACTGACTCTTTTAATCCAGTCCATATAATGTCTTTTTGGGATCGAGCAGATCCATTCTTTTTTCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCGGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGTTGGTTTATCAAGAATATGCAAGAAAAGCACTACAGATTGTTGATTCATCACCAGAGATGGCTTAGAACCAATAATTCATTATCTAATGAATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATTTGTTCCTTTCTAACGGAACACTATGGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGTTTTTCCTAGATGAAATGTTTGTTGCTATCTGTTACAATAACAAATCATTGGTTTAACTGAATAACTAAATAAAATAGATAGACCCTTCTCTTCTTCTTAGGTCGATGGATCTTCTCCATTGAAAGATCCCCTATATGGATAATACACATTCTAGTTCAACGAGCCTAATTCTAATTGTTTTGTTCCGAAGCAAACCACGGGGCGGTTCGTCCTATTCAGATATTCACGACCAAAAAACACTGGATTCTCTTTCGGGTAGGCCCTGAAAGGAGAAGGAAGGCTCGTTTCTAGTCCATCTGTTTCTATTTCTATATATATGGAAAGTGAAAAAATTATCATATATATAATAATCCAAAAATTGCAATAGAAAAGAAAAAGGGAGGTTTGTAATGATTTTAAAATCTTTTATACTAGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGAACAACTCATGATGTTCATATCGATCTATTATGCGCCTCTACATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTTTATGAAACTTCTTACCCTCCTGATGGAAATAAAGAAAATTACAAAATGCTGTTAG

mRNA sequence

ATGACTACTATTGTAGATACGTCATGGTATGAGATTATTTGGACTACAAGATCAAACCAGATTCTAGAGCCAGATTTAATAAGTAATAGTCAACCAATTGGAATTCATTTATCTAACATATTTTTTCTTCCATTTGAACTAATTTCGATCATTCTTTTAGCTGCTTTGATCGGCGCAATTGTCGTCGCTAGTAATAAATCTTTAGAGTTGGTCAATCATGCTCGAACATGTACTTATTCTAAGTGCCTATTTATTTTCTATCGGTACTATGGATTGATCACGAGCCGAAATATGGTTAGGGCCCTTATGTGTCTTGAGCTTATACTGAATGCAGTTAATATGAATTTTGTAACATTTTCTGATTTGTTTGATAGTAGCCAATTAAAAGGGAATATTTTCTCAATTTTTGTTATAGCTTTTGCTGTCGCCCATATTCTCCGGATAAAAGTCAGAATATGGTTGGGGTACTTATGGCGGAACGGGCTGATTGTCTTTCACAATAAAGTGATAGATGGAACTACCATTAAACGACTTATTAGCATATTAATAGATCACTTCGGAATGACATATACATCACACATCCTGAATCAAATAAAGACTCTAGGGTTCCAGCAGGCCATTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGTTGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTTTCCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATAACTGACTCTTTTAATCCAGTCCATATAATGTCTTTTTGGGATCGAGCAGATCCATTCTTTTTTCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCGGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGAACAACTCATGATGTTCATATCGATCTATTATGCGCCTCTACATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTTTATGAAACTTCTTACCCTCCTGATGGAAATAAAGAAAATTACAAAATGCTGTTAG

Coding sequence (CDS)

ATGACTACTATTGTAGATACGTCATGGTATGAGATTATTTGGACTACAAGATCAAACCAGATTCTAGAGCCAGATTTAATAAGTAATAGTCAACCAATTGGAATTCATTTATCTAACATATTTTTTCTTCCATTTGAACTAATTTCGATCATTCTTTTAGCTGCTTTGATCGGCGCAATTGTCGTCGCTAGTAATAAATCTTTAGAGTTGGTCAATCATGCTCGAACATGTACTTATTCTAAGTGCCTATTTATTTTCTATCGGTACTATGGATTGATCACGAGCCGAAATATGGTTAGGGCCCTTATGTGTCTTGAGCTTATACTGAATGCAGTTAATATGAATTTTGTAACATTTTCTGATTTGTTTGATAGTAGCCAATTAAAAGGGAATATTTTCTCAATTTTTGTTATAGCTTTTGCTGTCGCCCATATTCTCCGGATAAAAGTCAGAATATGGTTGGGGTACTTATGGCGGAACGGGCTGATTGTCTTTCACAATAAAGTGATAGATGGAACTACCATTAAACGACTTATTAGCATATTAATAGATCACTTCGGAATGACATATACATCACACATCCTGAATCAAATAAAGACTCTAGGGTTCCAGCAGGCCATTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGTTGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTTTCCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATAACTGACTCTTTTAATCCAGTCCATATAATGTCTTTTTGGGATCGAGCAGATCCATTCTTTTTTCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCGGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGAACAACTCATGATGTTCATATCGATCTATTATGCGCCTCTACATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTTTATGAAACTTCTTACCCTCCTGATGGAAATAAAGAAAATTACAAAATGCTGTTAG

Protein sequence

MTTIVDTSWYEIIWTTRSNQILEPDLISNSQPIGIHLSNIFFLPFELISIILLAALIGAIVVASNKSLELVNHARTCTYSKCLFIFYRYYGLITSRNMVRALMCLELILNAVNMNFVTFSDLFDSSQLKGNIFSIFVIAFAVAHILRIKVRIWLGYLWRNGLIVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIPSKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFNPVHIMSFWDRADPFFFLFKDQPFVSVFSHREFFADEEMSKGRLTSQTDLPICIYKRNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITEQLMMFISIYYAPLHLALGRPHTITVLALPFMKLLTLLMEIKKITKCC

Homology

[Close]

BLAST of CmaCh06G008880 vs. Swiss-Prot
Match: RPOC2_EUCGG (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-60
Identity = 114/127 (89.76%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+Q+KTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIE+WYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. Swiss-Prot
Match: RPOC2_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-60
Identity = 115/127 (90.55%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+Q+KTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. Swiss-Prot
Match: RPOC2_NASOF (DNA-directed RNA polymerase subunit beta'' OS=Nasturtium officinale GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.8e-60
Identity = 114/127 (89.76%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+Q+KTLGFQQA ATSISLGIDDLLTIP
Sbjct: 7   LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIP 66

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 67  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 126

Query: 283 PVHIMSF 290
           PVH+MSF
Sbjct: 127 PVHMMSF 133

[Close]

BLAST of CmaCh06G008880 vs. Swiss-Prot
Match: RPOC2_LEPVR (DNA-directed RNA polymerase subunit beta'' OS=Lepidium virginicum GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.8e-60
Identity = 114/127 (89.76%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+Q+KTLGFQQA ATSISLGIDDLLTIP
Sbjct: 7   LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIP 66

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 67  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 126

Query: 283 PVHIMSF 290
           PVH+MSF
Sbjct: 127 PVHMMSF 133

[Close]

BLAST of CmaCh06G008880 vs. Swiss-Prot
Match: RPOC2_SINAL (DNA-directed RNA polymerase subunit beta'' OS=Sinapis alba GN=rpoC2 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.8e-60
Identity = 114/127 (89.76%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+Q+KTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVH+MSF
Sbjct: 131 PVHMMSF 137

[Close]

BLAST of CmaCh06G008880 vs. TrEMBL
Match: A0A0S2IDT9_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita argyrosperma GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+QIKTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. TrEMBL
Match: A0A0S2IGZ0_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita pedatifolia GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+QIKTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. TrEMBL
Match: A0A0S2IDY7_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita argyrosperma var. palmeri GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+QIKTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. TrEMBL
Match: A0A0S2IFZ6_CUCPE (DNA-directed RNA polymerase subunit OS=Cucurbita pepo subsp. fraterna GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+QIKTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. TrEMBL
Match: A0A0S2IEB7_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita cordata GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+QIKTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. TAIR10
Match: ATCG00170.1 (ATCG00170.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 231.9 bits (590), Expect = 7.8e-61
Identity = 113/127 (88.98%), Postives = 118/127 (92.91%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+Q+KTLGFQQA ATSISLGIDDLLTIP
Sbjct: 7   LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIP 66

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQS ILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 67  SKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 126

Query: 283 PVHIMSF 290
           PVH+MSF
Sbjct: 127 PVHMMSF 133

[Close]

BLAST of CmaCh06G008880 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-39
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 339 NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATTGFIT 398
           NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM   EEGTEKKVSATTGFI 
Sbjct: 11  NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIA 70

Query: 399 EQLMMFISIYYAPLHLALGRPHTITVLALPFM 428
            QLMMFISIYYAPLHLALGRPHTITVLALP++
Sbjct: 71  GQLMMFISIYYAPLHLALGRPHTITVLALPYL 102

[Close]

BLAST of CmaCh06G008880 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-39
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 339 NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATTGFIT 398
           NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM   EEGTEKKVSATTGFI 
Sbjct: 11  NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIA 70

Query: 399 EQLMMFISIYYAPLHLALGRPHTITVLALPFM 428
            QLMMFISIYYAPLHLALGRPHTITVLALP++
Sbjct: 71  GQLMMFISIYYAPLHLALGRPHTITVLALPYL 102

[Close]

BLAST of CmaCh06G008880 vs. TAIR10
Match: ATMG00370.1 (ATMG00370.1 Ycf1 protein)

HSP 1 Score: 158.7 bits (400), Expect = 8.4e-39
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 1


Query: 339 NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATTGFIT 398
           NLV LCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM   EEGTEKKVSATTGFI 
Sbjct: 10  NLVYLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIA 69

Query: 399 EQLMMFISIYYAPLHLALGRPHTITVLALPFM 428
            QLMMFISIYYAPLHLALGRPHTITVLALP++
Sbjct: 70  GQLMMFISIYYAPLHLALGRPHTITVLALPYL 101

[Close]

BLAST of CmaCh06G008880 vs. TAIR10
Match: AT2G07739.1 (AT2G07739.1 Ycf1 protein)

HSP 1 Score: 156.4 bits (394), Expect = 4.1e-38
Identity = 83/92 (90.22%), Postives = 85/92 (92.39%), Query Frame = 1


Query: 339 NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATTGFIT 398
           NLV LCMKIINSVVVVGLYYGFLTTFSIGP YLFLLRARVM   EEGTEKKVSATTGFI 
Sbjct: 10  NLVYLCMKIINSVVVVGLYYGFLTTFSIGPFYLFLLRARVMDEGEEGTEKKVSATTGFIA 69

Query: 399 EQLMMFISIYYAPLHLALGRPHTITVLALPFM 428
            QLMMFISIYYAPLHLALGRPHTITVLALP++
Sbjct: 70  GQLMMFISIYYAPLHLALGRPHTITVLALPYL 101

[Close]

BLAST of CmaCh06G008880 vs. NCBI nr
Match: gi|952955219|gb|ALO22570.1| (RpoC2 (plastid) [Cucurbita pepo subsp. fraterna])

HSP 1 Score: 235.7 bits (600), Expect = 1.5e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+QIKTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. NCBI nr
Match: gi|952954354|gb|ALO21718.1| (RpoC2 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 235.7 bits (600), Expect = 1.5e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+QIKTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. NCBI nr
Match: gi|952954561|gb|ALO21922.1| (RpoC2 (plastid) [Cucurbita cordata])

HSP 1 Score: 235.7 bits (600), Expect = 1.5e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+QIKTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. NCBI nr
Match: gi|952955523|gb|ALO22869.1| (RpoC2 (plastid) [Cucurbita pedatifolia])

HSP 1 Score: 235.7 bits (600), Expect = 1.5e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+QIKTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

[Close]

BLAST of CmaCh06G008880 vs. NCBI nr
Match: gi|952954722|gb|ALO22081.1| (RpoC2 (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 235.7 bits (600), Expect = 1.5e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 163 IVFHNKVIDGTTIKRLISILIDHFGMTYTSHILNQIKTLGFQQAIATSISLGIDDLLTIP 222
           +VFHNKVIDGT IKRLIS LIDHFGM YTSHIL+QIKTLGFQQA ATSISLGIDDLLTIP
Sbjct: 11  LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIP 70

Query: 223 SKGWLVQVAEQQSLILEKHHHYGNVHAVEKFSQSIEIWYATSEYLRQEMNPNFRITDSFN 282
           SKGWLVQ AEQQSLILEKHHHYGNVHAVEK  QSIEIWYATSEYLRQEMNPNFR+TD FN
Sbjct: 71  SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN 130

Query: 283 PVHIMSF 290
           PVHIMSF
Sbjct: 131 PVHIMSF 137

The following BLAST results are available for this feature:

BLAST of CmaCh06G008880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPOC2_EUCGG	1.6e-60	89.76	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
RPOC2_CUCSA	1.6e-60	90.55	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1	[more]
RPOC2_NASOF	2.8e-60	89.76	DNA-directed RNA polymerase subunit beta'' OS=Nasturtium officinale GN=rpoC2 PE=...	[more]
RPOC2_LEPVR	2.8e-60	89.76	DNA-directed RNA polymerase subunit beta'' OS=Lepidium virginicum GN=rpoC2 PE=3 ...	[more]
RPOC2_SINAL	2.8e-60	89.76	DNA-directed RNA polymerase subunit beta'' OS=Sinapis alba GN=rpoC2 PE=1 SV=1	[more]

BLAST of CmaCh06G008880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IDT9_9ROSI	1.1e-58	91.34	DNA-directed RNA polymerase subunit OS=Cucurbita argyrosperma GN=rpoC2 PE=3 SV=1	[more]
A0A0S2IGZ0_9ROSI	1.1e-58	91.34	DNA-directed RNA polymerase subunit OS=Cucurbita pedatifolia GN=rpoC2 PE=3 SV=1	[more]
A0A0S2IDY7_9ROSI	1.1e-58	91.34	DNA-directed RNA polymerase subunit OS=Cucurbita argyrosperma var. palmeri GN=rp...	[more]
A0A0S2IFZ6_CUCPE	1.1e-58	91.34	DNA-directed RNA polymerase subunit OS=Cucurbita pepo subsp. fraterna GN=rpoC2 P...	[more]
A0A0S2IEB7_9ROSI	1.1e-58	91.34	DNA-directed RNA polymerase subunit OS=Cucurbita cordata GN=rpoC2 PE=3 SV=1	[more]

BLAST of CmaCh06G008880 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00170.1	7.8e-61	88.98	ATCG00170.1 DNA-directed RNA polymerase family protein	[more]
ATCG01130.1	1.7e-39	92.39	ATCG01130.1 Ycf1 protein	[more]
ATCG01000.1	1.7e-39	92.39	ATCG01000.1 Ycf1 protein	[more]
ATMG00370.1	8.4e-39	91.30	ATMG00370.1 Ycf1 protein	[more]
AT2G07739.1	4.1e-38	90.22	Ycf1 protein	[more]

BLAST of CmaCh06G008880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|952955219\|gb\|ALO22570.1\|	1.5e-58	91.34	RpoC2 (plastid) [Cucurbita pepo subsp. fraterna]	[more]
gi\|952954354\|gb\|ALO21718.1\|	1.5e-58	91.34	RpoC2 (plastid) [Cucurbita argyrosperma]	[more]
gi\|952954561\|gb\|ALO21922.1\|	1.5e-58	91.34	RpoC2 (plastid) [Cucurbita cordata]	[more]
gi\|952955523\|gb\|ALO22869.1\|	1.5e-58	91.34	RpoC2 (plastid) [Cucurbita pedatifolia]	[more]
gi\|952954722\|gb\|ALO22081.1\|	1.5e-58	91.34	RpoC2 (plastid) [Cucurbita ecuadorensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001133	NADH_UbQ_OxRdtase_chain4L/K
IPR001457	NADH_UbQ/plastoQ_OxRdtase_su6
IPR007066	RNA_pol_Rpb1_3
IPR008896	TIC214

Vocabulary: **Molecular Function**
Term	Definition
GO:0016651	oxidoreductase activity, acting on NAD(P)H
GO:0008137	NADH dehydrogenase (ubiquinone) activity
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0042773	ATP synthesis coupled electron transport
GO:0055114	oxidation-reduction process
GO:0006351	transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G008880.1	CmaCh06G008880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001133	NADH-ubiquinone oxidoreductase chain 4L/K	PFAM	PF00420	Oxidored_q2	coord: 89..144 score: 1.7
IPR001457	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	PFAM	PF00499	Oxidored_q3	coord: 11..61 score: 3.
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 157..218 score: 7.
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 350..428 score: 1.4
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 335..427 score: 4.1
None	No IPR available	PANTHER	PTHR33163:SF3	MEMBRANE PROTEIN YCF1-RELATED	coord: 335..427 score: 4.1
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 115..289 score: 1.81

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G008880	Cucumber (Gy14) v2	cgybcmaB444
CmaCh06G008880	Melon (DHL92) v3.6.1	cmamedB853
CmaCh06G008880	Silver-seed gourd	carcmaB0447
CmaCh06G008880	Cucumber (Chinese Long) v3	cmacucB0982
CmaCh06G008880	Watermelon (97103) v2	cmawmbB841
CmaCh06G008880	Wax gourd	cmawgoB0980
CmaCh06G008880	Wax gourd	cmawgoB0994
CmaCh06G008880	Cucurbita maxima (Rimu)	cmacmaB290
CmaCh06G008880	Cucumber (Gy14) v1	cgycmaB0944
CmaCh06G008880	Cucurbita moschata (Rifu)	cmacmoB802
CmaCh06G008880	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G008880	Wild cucumber (PI 183967)	cmacpiB844
CmaCh06G008880	Cucumber (Chinese Long) v2	cmacuB831
CmaCh06G008880	Melon (DHL92) v3.5.1	cmameB753
CmaCh06G008880	Watermelon (Charleston Gray)	cmawcgB723
CmaCh06G008880	Watermelon (97103) v1	cmawmB786
CmaCh06G008880	Cucurbita pepo (Zucchini)	cmacpeB841
CmaCh06G008880	Bottle gourd (USVL1VR-Ls)	cmalsiB753