CmaCh06G008750 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G008750
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrotransposon protein, Ty3-gypsy subclass, putative
LocationCma_Chr06 : 5265828 .. 5268995 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACATAATGGAGAAGGAGTACCACCAGTACCAGATCTAAATACAACCATTCTTCAAGCAATTAAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGTGCAACAACAAAAACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGACGGAAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATAGGGGAGTTAAACTCAAAATCCCACCCTTTTGTGGAACGACAGATTCTGAGGCATACTTGCAATGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGTTATTGCCAAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATTCGAGAGAAGAAGAAAAGAGGAGGATCCAATAGAGACTTGAGAAGAACTTAAAAGAAGCCATGAGAAGAAGGTATGTTCCAAAACATTATGAAAGAAATTTAAAAACTAAATTACAAGGTTTGAGGCAAAGAACAAAAGGTGTGACAAAATATTATCAAGAGATGGAAACTATGATGGAAGGAGCAAATGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTATTGACAAAAATCCACCACCATATCTGGAAGACATGTATCATTTTGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTAAAAAAGGTACACATCACGAACTAACATCTTTTCAAATTCTAAAACTTGGAATAAGGATAGTTTTGTGAATAGAAATCAATCGTTGTCACCAAAAGAAAAGTTTGTCGTTGTCACCAAAAGAAAAGTTTGTAGCTATTAAAAGAGTGAAGGCTGAGAGTTCCAATTGTAAAAAAAATGAAGCTTCAAAGAAGTCTAGTTCTATTCAATGTTGAAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTGTTAATAAAAAAGTTATGGTGATAAGCAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGTATCATATGATGATGCGTATGTTGAAGAAGGTAATTCTATATCTTTGATCACAAGAAGGGTACTTAATGTTCAAATCAAGGAAGAGAAATTTGAAGATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGATCAAAGGAAACCCATGGAGCTTGGTGATTGATAGTGGAAGTTGCACAAATGTGGTAAACAACTTCCTTGAAAAAAGACTTCAACTTTCTGTCCATCCCCATCCAAAACCGTAAAAAGTTGACAAAGAATTAAGAAATTAAGGTGAATTCCCAAGCTCTTATTTCTTTTACTCTTGGAAGATATGAAGATAAAATCTTTTGTTATGTCGTACCAATGCATGGGGGGGACATCTTGTTCGGCCGACCTTGGCAATATGATAGAAAGGTAACATTTGATGGTTCGACGAACAAGAATACTTTTACTTTGTGTGGAAAGAAATTTACTTTACTTCCGTTGTCTTCATATGAAGTACATTGTAACCAATTGAAATTAGAGAAAGAAAGAAGAGAATATGAATAACAACAGTGGAGAGAAGAAACTAAGGTAAAGGAGAGAGATAAGAGTGAAAAAAAGAGAAAAGTGAGGGGCAAAGGATGAGTGAAAACCAAAAAAAAAAAAAAAAGGTGAAAAAAAAAAGTGAGAAAAAATATATTAGTAGAGAAAAAAAACAATATTCAGTTCTTGTCCGAAAAGAGAATTTGATTTGAGGACAAATCCTTTTAAAGAAAGAGGGGAAGATAGGAATCCAACAACTTATCACTTTCATGTACCGAACGAGCAATTACAAGAAGCAATACAAACAAAATTCAAGTATCAAATCAAGAAAATTATGGAGAGGCTGACATTGGAAAGTTATTAGATGACTTGCCATTGGCAGTTGAATTAACAATTAAGACAATTTATGAATGCCTTATTTTCTTTCATTTGTATTTAATAGCATTTATTAGTGATTTGTGCTTGGTGGCTGAACTTTATTATGTTAGGGTTATCTTTTGAGCCTATTTAAAGGCATGTAATATTCATGTTTGGGAGAGAAATTGTTGAATACAAACAAAACCTTCGTGTTTTCTTCATACCTTTTTGGTGTTATTCTTTTTCAAACCTTGCTTTAGGTTTGATGTTTAAACTGGTTCATTGAATTAGTTTTGATCAAGCTAATTCTGAAGTGAGTTGACTTGGAATCTAAGAGTGACCATCATAGAGTTCAAGTTTGATCTAAGAGTCATTCATCTTCTAACCAGCTCTTGGTTGGAATCAATTCGTTAAGTTAGCTTTCTCTGTGAACGTTTTGCAAGGATTCTAGAAGGACCTCTAGCTTTACAAATTCCATCATTTTTGGCGCTTATCAATAACAGCTTCCAAGCAACTAATGGAATGACACCATTTGAGGCCCTTTACGGAAAACGGTGTAGGTCCCCACTATGCTGGGACGAAGTAGGCGAGATAGAGTTAGTAGGACCCGAGCTGGTTCGACTCACCAATGAGGCTAACCAGAAAATTCGAGCGAGGATGCATACAGCTCAAAGTAGACAGAAAAGCTATGTCGATGTAAGGCGTAGAAGCCTGGAGTTTGAGATAGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTCTTAAGCTTCGGACGTAAGGGCAAGTTAAGTCCTAAATTCATTGAACCATTCAAGATCCTAAAGCGAGTTGGTCCAGTGGCGTATAAGTTAGCCCTACCTCCAGCCCACTCAAGAGTACACGATGCATTTCATGTGTCGATGCTAAGGACATACATTACCGACCCTATCCACGTAATAGACTACAAACCACTCCTACTAAATGAAGATTTGAGCTACGAGGAAAAACCAGTAAAAATCATAGCTAGGGAAGTAAAAATCTTACGCAACAGGAACATTACGTTCGTTAAGGTATTGTGGCAAAATCACCATAGCGAAGAAGCCACGTGGGAGCGTGAGGACGAAATAAAAGAAAAATACCCCGAGCTAGTACAAGAGTTTGAGACTTTCGAGAACGAAAGTTCTTTTTAG

mRNA sequence

ATGTCACATAATGGAGAAGGAGTACCACCAGTACCAGATCTAAATACAACCATTCTTCAAGCAATTAAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGTGCAACAACAAAAACAAGAACGAACATTACAAGAAGATGAAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGTATCATATGATGATGCGTATGTTGAAGAAGATATGAAGATAAAATCTTTTGTTATGTCGTACCAATGCATGGGGGGGACATCTTGTTCGGCCGACCTTGGCAATATGATAGAAAGGATTCTAGAAGGACCTCTAGCTTTACAAATTCCATCATTTTTGGCGCTTATCAATAACAGCTTCCAAGCAACTAATGGAATGACACCATTTGAGGCCCTTTACGGAAAACGGTGTAGGTCCCCACTATGCTGGGACGAAGTAGGCGAGATAGAGTTAGTAGGACCCGAGCTGGTTCGACTCACCAATGAGGCTAACCAGAAAATTCGAGCGAGGATGCATACAGCTCAAAGTAGACAGAAAAGCTATGTCGATGTAAGGCGTAGAAGCCTGGAGTTTGAGATAGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTCTTAAGCTTCGGACGTAAGGGCAAGTTAAGTCCTAAATTCATTGAACCATTCAAGATCCTAAAGCGAGTTGGTCCAGTGGCGTATAAGTTAGCCCTACCTCCAGCCCACTCAAGAGTACACGATGCATTTCATGTGTCGATGCTAAGGACATACATTACCGACCCTATCCACGTAATAGACTACAAACCACTCCTACTAAATGAAGATTTGAGCTACGAGGAAAAACCAGTAAAAATCATAGCTAGGGAAGTAAAAATCTTACGCAACAGGAACATTACGTTCGTTAAGGTATTGTGGCAAAATCACCATAGCGAAGAAGCCACGTGGGAGCGTGAGGACGAAATAAAAGAAAAATACCCCGAGCTAGTACAAGAGTTTGAGACTTTCGAGAACGAAAGTTCTTTTTAG

Coding sequence (CDS)

ATGTCACATAATGGAGAAGGAGTACCACCAGTACCAGATCTAAATACAACCATTCTTCAAGCAATTAAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGTGCAACAACAAAAACAAGAACGAACATTACAAGAAGATGAAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGTATCATATGATGATGCGTATGTTGAAGAAGATATGAAGATAAAATCTTTTGTTATGTCGTACCAATGCATGGGGGGGACATCTTGTTCGGCCGACCTTGGCAATATGATAGAAAGGATTCTAGAAGGACCTCTAGCTTTACAAATTCCATCATTTTTGGCGCTTATCAATAACAGCTTCCAAGCAACTAATGGAATGACACCATTTGAGGCCCTTTACGGAAAACGGTGTAGGTCCCCACTATGCTGGGACGAAGTAGGCGAGATAGAGTTAGTAGGACCCGAGCTGGTTCGACTCACCAATGAGGCTAACCAGAAAATTCGAGCGAGGATGCATACAGCTCAAAGTAGACAGAAAAGCTATGTCGATGTAAGGCGTAGAAGCCTGGAGTTTGAGATAGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTCTTAAGCTTCGGACGTAAGGGCAAGTTAAGTCCTAAATTCATTGAACCATTCAAGATCCTAAAGCGAGTTGGTCCAGTGGCGTATAAGTTAGCCCTACCTCCAGCCCACTCAAGAGTACACGATGCATTTCATGTGTCGATGCTAAGGACATACATTACCGACCCTATCCACGTAATAGACTACAAACCACTCCTACTAAATGAAGATTTGAGCTACGAGGAAAAACCAGTAAAAATCATAGCTAGGGAAGTAAAAATCTTACGCAACAGGAACATTACGTTCGTTAAGGTATTGTGGCAAAATCACCATAGCGAAGAAGCCACGTGGGAGCGTGAGGACGAAATAAAAGAAAAATACCCCGAGCTAGTACAAGAGTTTGAGACTTTCGAGAACGAAAGTTCTTTTTAG

Protein sequence

MSHNGEGVPPVPDLNTTILQAIKGMMKMMMEDRQERRVQQQKQERTLQEDEDDECEDHDSQLVEEIVSYDDAYVEEDMKIKSFVMSYQCMGGTSCSADLGNMIERILEGPLALQIPSFLALINNSFQATNGMTPFEALYGKRCRSPLCWDEVGEIELVGPELVRLTNEANQKIRARMHTAQSRQKSYVDVRRRSLEFEIGDPVFLKVAPMKGVLSFGRKGKLSPKFIEPFKILKRVGPVAYKLALPPAHSRVHDAFHVSMLRTYITDPIHVIDYKPLLLNEDLSYEEKPVKIIAREVKILRNRNITFVKVLWQNHHSEEATWEREDEIKEKYPELVQEFETFENESSF
Homology
[Close]
BLAST of CmaCh06G008750 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-07
Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = 1 

Query: 123  NNSFQATNGMTPFEALYG-KRCRSPLCWDEVGEIELVGPELVRLTNEANQKIRARMHTAQ 182
            NN+  +   MTPFE ++      SPL   E+        E  + T +  Q ++  ++T  
Sbjct: 1119 NNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVFQTVKEHLNTNN 1178

Query: 183  SRQKSYVDVRRRSLE-FEIGDPVFLKVAPMKGVLSFGRKGKLSPKFIEPFKILKRVGPVA 242
             + K Y D++ + +E F+ GD V +K     G L   +  KL+P F  PF +L++ GP  
Sbjct: 1179 IKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNN 1238

Query: 243  YKLALPPAHSRVHDA-FHVSMLRTY 265
            Y+L LP +   +  + FHVS L  Y
Sbjct: 1239 YELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmaCh06G008750 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-07
Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = 1 

Query: 123  NNSFQATNGMTPFEALYG-KRCRSPLCWDEVGEIELVGPELVRLTNEANQKIRARMHTAQ 182
            NN+  +   MTPFE ++      SPL   E+        E  + T +  Q ++  ++T  
Sbjct: 1119 NNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVFQTVKEHLNTNN 1178

Query: 183  SRQKSYVDVRRRSLE-FEIGDPVFLKVAPMKGVLSFGRKGKLSPKFIEPFKILKRVGPVA 242
             + K Y D++ + +E F+ GD V +K     G L   +  KL+P F  PF +L++ GP  
Sbjct: 1179 IKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNN 1238

Query: 243  YKLALPPAHSRVHDA-FHVSMLRTY 265
            Y+L LP +   +  + FHVS L  Y
Sbjct: 1239 YELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmaCh06G008750 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-07
Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = 1 

Query: 123  NNSFQATNGMTPFEALYG-KRCRSPLCWDEVGEIELVGPELVRLTNEANQKIRARMHTAQ 182
            NN+  +   MTPFE ++      SPL   E+        E  + T +  Q ++  ++T  
Sbjct: 1119 NNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVFQTVKEHLNTNN 1178

Query: 183  SRQKSYVDVRRRSLE-FEIGDPVFLKVAPMKGVLSFGRKGKLSPKFIEPFKILKRVGPVA 242
             + K Y D++ + +E F+ GD V +K     G L   +  KL+P F  PF +L++ GP  
Sbjct: 1179 IKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNN 1238

Query: 243  YKLALPPAHSRVHDA-FHVSMLRTY 265
            Y+L LP +   +  + FHVS L  Y
Sbjct: 1239 YELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmaCh06G008750 vs. Swiss-Prot
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-07
Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = 1 

Query: 123  NNSFQATNGMTPFEALYG-KRCRSPLCWDEVGEIELVGPELVRLTNEANQKIRARMHTAQ 182
            NN+  +   MTPFE ++      SPL   E+        E  + T +  Q ++  ++T  
Sbjct: 1119 NNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVFQTVKEHLNTNN 1178

Query: 183  SRQKSYVDVRRRSLE-FEIGDPVFLKVAPMKGVLSFGRKGKLSPKFIEPFKILKRVGPVA 242
             + K Y D++ + +E F+ GD V +K     G L   +  KL+P F  PF +L++ GP  
Sbjct: 1179 IKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNN 1238

Query: 243  YKLALPPAHSRVHDA-FHVSMLRTY 265
            Y+L LP +   +  + FHVS L  Y
Sbjct: 1239 YELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmaCh06G008750 vs. Swiss-Prot
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-07
Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = 1 

Query: 123  NNSFQATNGMTPFEALYG-KRCRSPLCWDEVGEIELVGPELVRLTNEANQKIRARMHTAQ 182
            NN+  +   MTPFE ++      SPL   E+        E  + T +  Q ++  ++T  
Sbjct: 1119 NNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVFQTVKEHLNTNN 1178

Query: 183  SRQKSYVDVRRRSLE-FEIGDPVFLKVAPMKGVLSFGRKGKLSPKFIEPFKILKRVGPVA 242
             + K Y D++ + +E F+ GD V +K     G L   +  KL+P F  PF +L++ GP  
Sbjct: 1179 IKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNN 1238

Query: 243  YKLALPPAHSRVHDA-FHVSMLRTY 265
            Y+L LP +   +  + FHVS L  Y
Sbjct: 1239 YELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmaCh06G008750 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 6.8e-85
Identity = 152/216 (70.37%), Postives = 184/216 (85.19%), Query Frame = 1 

Query: 123 NNSFQATNGMTPFEALYGKRCRSPLCWDEVGEIELVGPELVRLTNEANQKIRARMHTAQS 182
           NNS+QAT GM PFEALYG+ CRSP+CW EVGE  L+GPELV+ TNEA QKIR+RMHTAQS
Sbjct: 708 NNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQS 767

Query: 183 RQKSYVDVRRRSLEFEIGDPVFLKVAPMKGVLSFGRKGKLSPKFIEPFKILKRVGPVAYK 242
           RQKSY DVRR+ LEFE+GD VFLKVAPMKGVL F R+GKLSP+F+ PF+IL+R+GPVAY+
Sbjct: 768 RQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYR 827

Query: 243 LALPPAHSRVHDAFHVSMLRTYITDPIHVIDYKPLLLNEDLSYEEKPVKIIAREVKILRN 302
           LALPP+ S VHD FHVSMLR Y+ DP HV+DY+PL ++E+LSY E+PV+++AR VK LRN
Sbjct: 828 LALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRN 887

Query: 303 RNITFVKVLWQNHHSEEATWEREDEIKEKYPELVQE 339
           + I  VKVLW+NH  EEATWERED+++ +YPEL  E
Sbjct: 888 KQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFGE 923

[Close]
BLAST of CmaCh06G008750 vs. TrEMBL
Match: A5AQU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015014 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.5e-71
Identity = 135/232 (58.19%), Postives = 177/232 (76.29%), Query Frame = 1 

Query: 107 LEGPLALQIPSFLALINNSFQATNGMTPFEALYGKRCRSPLCWDEVGEIELVGPELVRLT 166
           L+G     +P      NNSFQA+ GMTPFEALYG++CRSP+CW++VGE +L+GPELV+LT
Sbjct: 357 LQGNWDDHLPLVEFAYNNSFQASIGMTPFEALYGRKCRSPICWNDVGERKLLGPELVQLT 416

Query: 167 NEANQKIRARMHTAQSRQKSYVDVRRRSLEFEIGDPVFLKVAPMKGVLSFGRKGKLSPKF 226
            E    I+ R+ T QSR KSY D RRR LEFE+GD VFLKV+PMK V+ FGRKGKLSP+F
Sbjct: 417 VEKVALIKERLKTTQSRHKSYADRRRRDLEFEVGDHVFLKVSPMKYVMRFGRKGKLSPRF 476

Query: 227 IEPFKILKRVGPVAYKLALPPAHSRVHDAFHVSMLRTYITDPIHVIDYKPLLLNEDLSYE 286
           + PF+IL+RVG +AYK+ALPP+ S+VH+ FHVS LR YI DP HV++ +P+ + EDL+YE
Sbjct: 477 VGPFEILERVGTLAYKVALPPSLSKVHNVFHVSTLRKYIYDPSHVVELEPIQIFEDLTYE 536

Query: 287 EKPVKIIAREVKILRNRNITFVKVLWQNHHSEEATWEREDEIKEKYPELVQE 339
           E PV+I+    K+LR+  +  VKV W NH   EATWE E+E++EK+P+L Q+
Sbjct: 537 EVPVQIVDVMNKVLRHAVVKLVKVQWNNHSIREATWELEEEMREKHPQLFQD 588

[Close]
BLAST of CmaCh06G008750 vs. TrEMBL
Match: A5BA10_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009489 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.6e-71
Identity = 135/232 (58.19%), Postives = 176/232 (75.86%), Query Frame = 1 

Query: 107 LEGPLALQIPSFLALINNSFQATNGMTPFEALYGKRCRSPLCWDEVGEIELVGPELVRLT 166
           L+G     +P      NNSFQA+ GM PFEALYG++CRSP+CW++VGE +L+GPELV+LT
Sbjct: 745 LQGNWDDHLPLVEFAYNNSFQASIGMAPFEALYGRKCRSPICWNDVGERKLLGPELVQLT 804

Query: 167 NEANQKIRARMHTAQSRQKSYVDVRRRSLEFEIGDPVFLKVAPMKGVLSFGRKGKLSPKF 226
            E    I+ R+  AQSR KSYVD RRR LEFE+GD VFLKV+PMK V+ FGRKGKLSP+F
Sbjct: 805 VEKVALIKERLKAAQSRHKSYVDHRRRDLEFEVGDHVFLKVSPMKSVMRFGRKGKLSPRF 864

Query: 227 IEPFKILKRVGPVAYKLALPPAHSRVHDAFHVSMLRTYITDPIHVIDYKPLLLNEDLSYE 286
           +  F+IL+RVG +AYK+ALPP+ S+VH+ FHVS LR YI DP HV+D +P+ + EDL+YE
Sbjct: 865 VGLFEILERVGTLAYKVALPPSLSKVHNVFHVSTLRKYIYDPSHVVDLEPIQIFEDLTYE 924

Query: 287 EKPVKIIAREVKILRNRNITFVKVLWQNHHSEEATWEREDEIKEKYPELVQE 339
           E PV+I+    K+LR+  +  VKV W NH   EATWE E+E++EK+P+L Q+
Sbjct: 925 EVPVQIVDMMDKVLRHAVVKLVKVQWSNHSIREATWELEEEMREKHPQLFQD 976

[Close]
BLAST of CmaCh06G008750 vs. TrEMBL
Match: A0A061G943_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027940 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 7.3e-71
Identity = 142/255 (55.69%), Postives = 182/255 (71.37%), Query Frame = 1 

Query: 88   QCMGGTSCSADLGNMIERILEG---PLALQIPSFLALI----NNSFQATNGMTPFEALYG 147
            Q  GG +   D    +E +L      L ++   +L L+    NNSFQ +  M PFEALYG
Sbjct: 795  QGTGGYTVFCDASGTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYG 854

Query: 148  KRCRSPLCWDEVGEIELVGPELVRLTNEANQKIRARMHTAQSRQKSYVDVRRRSLEFEIG 207
            +RCRSP+ W EVGE +L+GPELV+   E  + IR +M TAQSRQKSY D RRR LEF++G
Sbjct: 855  RRCRSPIGWLEVGERKLLGPELVQDATEKIRMIRQKMLTAQSRQKSYADNRRRDLEFQVG 914

Query: 208  DPVFLKVAPMKGVLSFGRKGKLSPKFIEPFKILKRVGPVAYKLALPPAHSRVHDAFHVSM 267
            D VFLKV+P KGV+ FG+KGKLSP++I PF+IL +VG VAY+LALPP  S +H  FHVSM
Sbjct: 915  DHVFLKVSPTKGVMRFGKKGKLSPRYIGPFEILDKVGAVAYRLALPPDLSNIHPVFHVSM 974

Query: 268  LRTYITDPIHVIDYKPLLLNEDLSYEEKPVKIIAREVKILRNRNITFVKVLWQNHHSEEA 327
            LR Y  DP HVI Y+ + L +DL+YEE+PV I+ R+VK LR++++  VKVLWQNH SEE 
Sbjct: 975  LRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWQNHTSEEV 1034

Query: 328  TWEREDEIKEKYPEL 336
            TWE EDE++ K+P L
Sbjct: 1035 TWEAEDEMRTKHPHL 1049

[Close]
BLAST of CmaCh06G008750 vs. TrEMBL
Match: A0A061GA43_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.1e-70
Identity = 141/242 (58.26%), Postives = 174/242 (71.90%), Query Frame = 1 

Query: 94  SCSADLGNMIERILEGPLALQIPSFLALINNSFQATNGMTPFEALYGKRCRSPLCWDEVG 153
           +C  DLG   E+ L        P      NNSFQ +  M PFEALYG+RCRSP+ W EVG
Sbjct: 443 ACVIDLGVRWEQYL--------PLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVG 502

Query: 154 EIELVGPELVRLTNEANQKIRARMHTAQSRQKSYVDVRRRSLEFEIGDPVFLKVAPMKGV 213
           E +L+GPELV+   E    IR RM TAQSRQKSY D RRR LEF++GD VFLK +P KGV
Sbjct: 503 ERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKFSPTKGV 562

Query: 214 LSFGRKGKLSPKFIEPFKILKRVGPVAYKLALPPAHSRVHDAFHVSMLRTYITDPIHVID 273
           + FG+KGKLSP++I PFKIL++VG VAY+LALPP  S +H  FHVSMLR Y  DP HVI 
Sbjct: 563 MRFGKKGKLSPRYIGPFKILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNLDPSHVIR 622

Query: 274 YKPLLLNEDLSYEEKPVKIIAREVKILRNRNITFVKVLWQNHHSEEATWEREDEIKEKYP 333
           Y+ + L +DLSYEE+PV I+ R+VK LR++++  VKVLW+NH SEE TWE EDE++ K+P
Sbjct: 623 YETIQLQDDLSYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSEEVTWEAEDEMRTKHP 676

Query: 334 EL 336
            L
Sbjct: 683 HL 676

[Close]
BLAST of CmaCh06G008750 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 322.4 bits (825), Expect = 9.7e-85
Identity = 152/216 (70.37%), Postives = 184/216 (85.19%), Query Frame = 1 

Query: 123 NNSFQATNGMTPFEALYGKRCRSPLCWDEVGEIELVGPELVRLTNEANQKIRARMHTAQS 182
           NNS+QAT GM PFEALYG+ CRSP+CW EVGE  L+GPELV+ TNEA QKIR+RMHTAQS
Sbjct: 708 NNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQS 767

Query: 183 RQKSYVDVRRRSLEFEIGDPVFLKVAPMKGVLSFGRKGKLSPKFIEPFKILKRVGPVAYK 242
           RQKSY DVRR+ LEFE+GD VFLKVAPMKGVL F R+GKLSP+F+ PF+IL+R+GPVAY+
Sbjct: 768 RQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYR 827

Query: 243 LALPPAHSRVHDAFHVSMLRTYITDPIHVIDYKPLLLNEDLSYEEKPVKIIAREVKILRN 302
           LALPP+ S VHD FHVSMLR Y+ DP HV+DY+PL ++E+LSY E+PV+++AR VK LRN
Sbjct: 828 LALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRN 887

Query: 303 RNITFVKVLWQNHHSEEATWEREDEIKEKYPELVQE 339
           + I  VKVLW+NH  EEATWERED+++ +YPEL  E
Sbjct: 888 KQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFGE 923

[Close]
BLAST of CmaCh06G008750 vs. NCBI nr
Match: gi|147856403|emb|CAN80324.1| (hypothetical protein VITISV_015014 [Vitis vinifera])

HSP 1 Score: 277.3 bits (708), Expect = 3.6e-71
Identity = 135/232 (58.19%), Postives = 177/232 (76.29%), Query Frame = 1 

Query: 107 LEGPLALQIPSFLALINNSFQATNGMTPFEALYGKRCRSPLCWDEVGEIELVGPELVRLT 166
           L+G     +P      NNSFQA+ GMTPFEALYG++CRSP+CW++VGE +L+GPELV+LT
Sbjct: 357 LQGNWDDHLPLVEFAYNNSFQASIGMTPFEALYGRKCRSPICWNDVGERKLLGPELVQLT 416

Query: 167 NEANQKIRARMHTAQSRQKSYVDVRRRSLEFEIGDPVFLKVAPMKGVLSFGRKGKLSPKF 226
            E    I+ R+ T QSR KSY D RRR LEFE+GD VFLKV+PMK V+ FGRKGKLSP+F
Sbjct: 417 VEKVALIKERLKTTQSRHKSYADRRRRDLEFEVGDHVFLKVSPMKYVMRFGRKGKLSPRF 476

Query: 227 IEPFKILKRVGPVAYKLALPPAHSRVHDAFHVSMLRTYITDPIHVIDYKPLLLNEDLSYE 286
           + PF+IL+RVG +AYK+ALPP+ S+VH+ FHVS LR YI DP HV++ +P+ + EDL+YE
Sbjct: 477 VGPFEILERVGTLAYKVALPPSLSKVHNVFHVSTLRKYIYDPSHVVELEPIQIFEDLTYE 536

Query: 287 EKPVKIIAREVKILRNRNITFVKVLWQNHHSEEATWEREDEIKEKYPELVQE 339
           E PV+I+    K+LR+  +  VKV W NH   EATWE E+E++EK+P+L Q+
Sbjct: 537 EVPVQIVDVMNKVLRHAVVKLVKVQWNNHSIREATWELEEEMREKHPQLFQD 588

[Close]
BLAST of CmaCh06G008750 vs. NCBI nr
Match: gi|147769978|emb|CAN61139.1| (hypothetical protein VITISV_009489 [Vitis vinifera])

HSP 1 Score: 276.2 bits (705), Expect = 8.0e-71
Identity = 135/232 (58.19%), Postives = 176/232 (75.86%), Query Frame = 1 

Query: 107 LEGPLALQIPSFLALINNSFQATNGMTPFEALYGKRCRSPLCWDEVGEIELVGPELVRLT 166
           L+G     +P      NNSFQA+ GM PFEALYG++CRSP+CW++VGE +L+GPELV+LT
Sbjct: 745 LQGNWDDHLPLVEFAYNNSFQASIGMAPFEALYGRKCRSPICWNDVGERKLLGPELVQLT 804

Query: 167 NEANQKIRARMHTAQSRQKSYVDVRRRSLEFEIGDPVFLKVAPMKGVLSFGRKGKLSPKF 226
            E    I+ R+  AQSR KSYVD RRR LEFE+GD VFLKV+PMK V+ FGRKGKLSP+F
Sbjct: 805 VEKVALIKERLKAAQSRHKSYVDHRRRDLEFEVGDHVFLKVSPMKSVMRFGRKGKLSPRF 864

Query: 227 IEPFKILKRVGPVAYKLALPPAHSRVHDAFHVSMLRTYITDPIHVIDYKPLLLNEDLSYE 286
           +  F+IL+RVG +AYK+ALPP+ S+VH+ FHVS LR YI DP HV+D +P+ + EDL+YE
Sbjct: 865 VGLFEILERVGTLAYKVALPPSLSKVHNVFHVSTLRKYIYDPSHVVDLEPIQIFEDLTYE 924

Query: 287 EKPVKIIAREVKILRNRNITFVKVLWQNHHSEEATWEREDEIKEKYPELVQE 339
           E PV+I+    K+LR+  +  VKV W NH   EATWE E+E++EK+P+L Q+
Sbjct: 925 EVPVQIVDMMDKVLRHAVVKLVKVQWSNHSIREATWELEEEMREKHPQLFQD 976

[Close]
BLAST of CmaCh06G008750 vs. NCBI nr
Match: gi|590617356|ref|XP_007023768.1| (Uncharacterized protein TCM_027940 [Theobroma cacao])

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 142/255 (55.69%), Postives = 182/255 (71.37%), Query Frame = 1 

Query: 88   QCMGGTSCSADLGNMIERILEG---PLALQIPSFLALI----NNSFQATNGMTPFEALYG 147
            Q  GG +   D    +E +L      L ++   +L L+    NNSFQ +  M PFEALYG
Sbjct: 795  QGTGGYTVFCDASGTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYG 854

Query: 148  KRCRSPLCWDEVGEIELVGPELVRLTNEANQKIRARMHTAQSRQKSYVDVRRRSLEFEIG 207
            +RCRSP+ W EVGE +L+GPELV+   E  + IR +M TAQSRQKSY D RRR LEF++G
Sbjct: 855  RRCRSPIGWLEVGERKLLGPELVQDATEKIRMIRQKMLTAQSRQKSYADNRRRDLEFQVG 914

Query: 208  DPVFLKVAPMKGVLSFGRKGKLSPKFIEPFKILKRVGPVAYKLALPPAHSRVHDAFHVSM 267
            D VFLKV+P KGV+ FG+KGKLSP++I PF+IL +VG VAY+LALPP  S +H  FHVSM
Sbjct: 915  DHVFLKVSPTKGVMRFGKKGKLSPRYIGPFEILDKVGAVAYRLALPPDLSNIHPVFHVSM 974

Query: 268  LRTYITDPIHVIDYKPLLLNEDLSYEEKPVKIIAREVKILRNRNITFVKVLWQNHHSEEA 327
            LR Y  DP HVI Y+ + L +DL+YEE+PV I+ R+VK LR++++  VKVLWQNH SEE 
Sbjct: 975  LRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWQNHTSEEV 1034

Query: 328  TWEREDEIKEKYPEL 336
            TWE EDE++ K+P L
Sbjct: 1035 TWEAEDEMRTKHPHL 1049

[Close]
BLAST of CmaCh06G008750 vs. NCBI nr
Match: gi|590617570|ref|XP_007023829.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 274.2 bits (700), Expect = 3.0e-70
Identity = 141/242 (58.26%), Postives = 174/242 (71.90%), Query Frame = 1 

Query: 94  SCSADLGNMIERILEGPLALQIPSFLALINNSFQATNGMTPFEALYGKRCRSPLCWDEVG 153
           +C  DLG   E+ L        P      NNSFQ +  M PFEALYG+RCRSP+ W EVG
Sbjct: 443 ACVIDLGVRWEQYL--------PLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVG 502

Query: 154 EIELVGPELVRLTNEANQKIRARMHTAQSRQKSYVDVRRRSLEFEIGDPVFLKVAPMKGV 213
           E +L+GPELV+   E    IR RM TAQSRQKSY D RRR LEF++GD VFLK +P KGV
Sbjct: 503 ERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKFSPTKGV 562

Query: 214 LSFGRKGKLSPKFIEPFKILKRVGPVAYKLALPPAHSRVHDAFHVSMLRTYITDPIHVID 273
           + FG+KGKLSP++I PFKIL++VG VAY+LALPP  S +H  FHVSMLR Y  DP HVI 
Sbjct: 563 MRFGKKGKLSPRYIGPFKILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNLDPSHVIR 622

Query: 274 YKPLLLNEDLSYEEKPVKIIAREVKILRNRNITFVKVLWQNHHSEEATWEREDEIKEKYP 333
           Y+ + L +DLSYEE+PV I+ R+VK LR++++  VKVLW+NH SEE TWE EDE++ K+P
Sbjct: 623 YETIQLQDDLSYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSEEVTWEAEDEMRTKHP 676

Query: 334 EL 336
            L
Sbjct: 683 HL 676

The following BLAST results are available for this feature:
BLAST of CmaCh06G008750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TF211_SCHPO2.8e-0731.03Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
TF212_SCHPO2.8e-0731.03Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
TF21_SCHPO2.8e-0731.03Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF22_SCHPO2.8e-0731.03Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF23_SCHPO2.8e-0731.03Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of CmaCh06G008750 vs. TrEMBL
Match NameE-valueIdentityDescription
Q84KB0_CUCME6.8e-8570.37Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5AQU5_VITVI2.5e-7158.19Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015014 PE=4 SV=1[more]
A5BA10_VITVI5.6e-7158.19Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009489 PE=4 SV=1[more]
A0A061G943_THECC7.3e-7155.69Uncharacterized protein OS=Theobroma cacao GN=TCM_027940 PE=4 SV=1[more]
A0A061GA43_THECC2.1e-7058.26DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV... [more]
BLAST of CmaCh06G008750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh06G008750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|28558781|gb|AAO45752.1|9.7e-8570.37pol protein [Cucumis melo subsp. melo][more]
gi|147856403|emb|CAN80324.1|3.6e-7158.19hypothetical protein VITISV_015014 [Vitis vinifera][more]
gi|147769978|emb|CAN61139.1|8.0e-7158.19hypothetical protein VITISV_009489 [Vitis vinifera][more]
gi|590617356|ref|XP_007023768.1|1.0e-7055.69Uncharacterized protein TCM_027940 [Theobroma cacao][more]
gi|590617570|ref|XP_007023829.1|3.0e-7058.26DNA/RNA polymerases superfamily protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromo-like_dom_sf
IPR023780Chromo_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G008750.1CmaCh06G008750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016197Chromo domain-likeunknownSSF54160Chromo domain-likecoord: 250..343
score: 7.
IPR023780Chromo domainPFAMPF00385Chromocoord: 289..340
score: 4.8
NoneNo IPR availableunknownCoilCoilcoord: 31..51
scor
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 293..341
score: 1.
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 123..335
score: 5.1
NoneNo IPR availablePANTHERPTHR24559:SF207SUBFAMILY NOT NAMEDcoord: 123..335
score: 5.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G008750Wax gourdcmawgoB0980
CmaCh06G008750Cucurbita moschata (Rifu)cmacmoB829