CmaCh06G008530 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G008530
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cma_Chr06 : 4760273 .. 4761579 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCAAAACACAAAGATGCACATGTCGTGGGGTCCATCATCGTCACCAAGAAGTTGGCGCCGCGAAGACGGACGCCAAGTTGCCGTCGAGCACGTGATCAAGGAGACGACCGCCTCTATGCAGTACCCAATGCTGACAAGGTCCAACTACAGCGAATGGGATTGGTTGATGTGCGTCAACCTACAGATGCAAGGGTTGTGGCACACCTTCGAGTCGAAGGAAGGAGAAATGATCGAGTACCGGAAGGAATGGCTGGTGTTCGCCGCTATACTGCGAGTTGTGCCTCCAGAGATGATGGTGTCTCTCTCCACCAAGAGCATCGCGCAATCGGCCTGGGATGGGATCAAATCCCACCGGGTTGGTGTGCAACGAGTGCGGGAGTCCAACGTTGAGCACCTACGGAAGGAGTTCTCGGAGATCCGTTTTAAGGACAGCGAATCCATCGATGCTTTTTCCATGCGGATCACGAAGCACCAACAGAATCACCACTCTTGGTGGGAGCGCCAACAAGACAGGTTGGTGTGCAGCGGGTGCGGGAGTCCAACGTTGAGCACCTACAAAAGGAGTTCTCGAAGATCCGCTTTAAGGACGGTGAATCCATCGATGATTTTTCTATGCGGATCACAAAGCACCAATAGTCACCACTCTTTGTGGGAGCATCAACAAGACGGAGATCGAGAAGAAGATGCTACAGGTCGCCCCATATCACCTTGATCAAGTCACGATTTCGATCAAGACATTGCTTGACATGAACAAACTAACGATGGAAGAGATGACCAGAAGATTGCGCAACGTCGAGCAGAGGAAGAAGAATGCCGCTTCAACTATCGACAAGCAGAGTCGTCTTCTCCTCACTAAGGAGGAGTGACTTGCACGCCTGAAGCTCCGCGACAACTCCGGCGAGAGTGGCGGGTCTTCCGTTGGAAAAGGCGGCAAGAAGCAGTGGAAACCTCGCAGGCACATACAAGAAAGAAAGAGAGTAAAAGAAGGAGTCGGCTGATAGCGAGCAAATCTGGTGCTCGAATTGCGGGAAGAAAAGTCACTTGGGCAAGGATTGTTGGAGCAAGCTCAGGAGCAAGGAGAAGGCCCATGTGGCCCAATCCGACGAGAAAGAGTCGGCCCTTTTCATGATGAGTGCATCGGTGCTATCTTTCCCCAATTCCGATTTCAAATCCACAGAAGTAATCAATAGCAGCGCTGCTCTAGTGAGCGTCGTTGGTGAGGGGTCGATAGATCTCGAGGAAGAGCTCCAGCTAGGCATTGCAAAGGCATCGACTGTGGAGCTGATTCAGCGGAAGGAGTGA

mRNA sequence

ATGCACCAAAACACAAAGATGCACATGTCGTGGGGTCCATCATCGTCACCAAGAAGTTGGCGCCGCGAAGACGGACGCCAAGTTGCCGTCGAGCACGTGATCAAGGAGACGACCGCCTCTATGCAGTACCCAATGCTGACAAGGTCCAACTACAGCGAATGGGATTGGTTGATGTGCGTCAACCTACAGATGCAAGGGTTGTGGCACACCTTCGAGTCGAAGGAAGGAGAAATGATCGAGTACCGGAAGGAATGGCTGGTGTTCGCCGCTATACTGCGAGTTGTGCCTCCAGAGATGATGGTGTCTCTCTCCACCAAGAGCATCGCGCAATCGGCCTGGGATGGGATCAAATCCCACCGGGTTGGTGTGCAACGAGTGCGGGAGTCCAACGTTGAGCACCTACGGAAGGAGTTCTCGGAGATCCGTTTTAAGGACAGCGAATCCATCGATGCTTTTTCCATGCGGATCACGAAGCACCAACAGAATCACCACTCTTGGTGGGAGCGCCAACAAGACAGGTTGGTGTGCAGCGGGTGCGGGAGTCCAACGTTGAGCACCTACAAAAGGAGTTCTCGAAGATCCGCTTTAAGGACGACGGAGATCGAGAAGAAGATGCTACAGGTCGCCCCATATCACCTTGATCAAGTCACGATTTCGATCAAGACATTGCTTGACATGAACAAACTAACGATGGAAGAGATGACCAGAAGATTGCGCAACGTCGAGCAGAGGAAGAAGAATGCCGCTTCAACTATCGACAAGCAGAGTCGTCTTCTCCTCACTAAGGAGGAGAGCAAGGAGAAGGCCCATGTGGCCCAATCCGACGAGAAAGAGTCGGCCCTTTTCATGATGAGTGCATCGGTGCTATCTTTCCCCAATTCCGATTTCAAATCCACAGAAGTAATCAATAGCAGCGCTGCTCTAGTGAGCGTCGTTGGTGAGGGGTCGATAGATCTCGAGGAAGAGCTCCAGCTAGGCATTGCAAAGGCATCGACTGTGGAGCTGATTCAGCGGAAGGAGTGA

Coding sequence (CDS)

ATGCACCAAAACACAAAGATGCACATGTCGTGGGGTCCATCATCGTCACCAAGAAGTTGGCGCCGCGAAGACGGACGCCAAGTTGCCGTCGAGCACGTGATCAAGGAGACGACCGCCTCTATGCAGTACCCAATGCTGACAAGGTCCAACTACAGCGAATGGGATTGGTTGATGTGCGTCAACCTACAGATGCAAGGGTTGTGGCACACCTTCGAGTCGAAGGAAGGAGAAATGATCGAGTACCGGAAGGAATGGCTGGTGTTCGCCGCTATACTGCGAGTTGTGCCTCCAGAGATGATGGTGTCTCTCTCCACCAAGAGCATCGCGCAATCGGCCTGGGATGGGATCAAATCCCACCGGGTTGGTGTGCAACGAGTGCGGGAGTCCAACGTTGAGCACCTACGGAAGGAGTTCTCGGAGATCCGTTTTAAGGACAGCGAATCCATCGATGCTTTTTCCATGCGGATCACGAAGCACCAACAGAATCACCACTCTTGGTGGGAGCGCCAACAAGACAGGTTGGTGTGCAGCGGGTGCGGGAGTCCAACGTTGAGCACCTACAAAAGGAGTTCTCGAAGATCCGCTTTAAGGACGACGGAGATCGAGAAGAAGATGCTACAGGTCGCCCCATATCACCTTGATCAAGTCACGATTTCGATCAAGACATTGCTTGACATGAACAAACTAACGATGGAAGAGATGACCAGAAGATTGCGCAACGTCGAGCAGAGGAAGAAGAATGCCGCTTCAACTATCGACAAGCAGAGTCGTCTTCTCCTCACTAAGGAGGAGAGCAAGGAGAAGGCCCATGTGGCCCAATCCGACGAGAAAGAGTCGGCCCTTTTCATGATGAGTGCATCGGTGCTATCTTTCCCCAATTCCGATTTCAAATCCACAGAAGTAATCAATAGCAGCGCTGCTCTAGTGAGCGTCGTTGGTGAGGGGTCGATAGATCTCGAGGAAGAGCTCCAGCTAGGCATTGCAAAGGCATCGACTGTGGAGCTGATTCAGCGGAAGGAGTGA

Protein sequence

MHQNTKMHMSWGPSSSPRSWRREDGRQVAVEHVIKETTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTFESKEGEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNVEHLRKEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSSRRSALRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKKNAASTIDKQSRLLLTKEESKEKAHVAQSDEKESALFMMSASVLSFPNSDFKSTEVINSSAALVSVVGEGSIDLEEELQLGIAKASTVELIQRKE

Homology

[Close]

BLAST of CmaCh06G008530 vs. TrEMBL
Match: Q7XPB1_ORYSJ (OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=4 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 2.3e-45
Identity = 115/266 (43.23%), Postives = 160/266 (60.15%), Query Frame = 1


Query: 14  SSSPRSWRREDGRQVAVEHVIKE-TTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTFE 73
           S SPR  R     QV VE V++E TT+S+ YP LTR+NY +W  +M VN+Q Q LW   E
Sbjct: 19  SPSPRRGRHGGRGQVVVERVVREATTSSVVYPTLTRTNYQDWALVMRVNMQAQCLWGAVE 78

Query: 74  SKEGEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNVE 133
            +  ++++YR++    AAILR VP EM+ +L+ K  AQ AW+ IK+ R+GVQRVRE+N +
Sbjct: 79  PEGDDLVDYRQDQQALAAILRAVPAEMLATLAVKETAQEAWEAIKTRRIGVQRVREANAQ 138

Query: 134 HLRKEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSSR 193
            LR+EF +I FKD E++D FSMRI     N  +  +                        
Sbjct: 139 QLRREFGDILFKDDETVDDFSMRIGGLANNLRTLGDN----------------------- 198

Query: 194 RSALRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKK----NA 253
              +   E+ +K+LQV P HL Q+ ISI+TLLD+N+L++EE+T RLR+VEQRK+     A
Sbjct: 199 ---ITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQRKQCKTAAA 258

Query: 254 ASTIDKQSRLLLTKEESKEKAHVAQS 275
           +S +D   RLL T+EE   K   A S
Sbjct: 259 SSRVDANGRLLFTEEEWLAKFRKAAS 258

[Close]

BLAST of CmaCh06G008530 vs. TrEMBL
Match: Q0J5Y3_ORYSJ (Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 103/251 (41.04%), Postives = 150/251 (59.76%), Query Frame = 1


Query: 14  SSSPRSWRREDGRQVAVEHVIKETTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTFES 73
           S SP   R   G ++ V   IKE  A++QYP LTR+NY EW  LM VN++  G+W+  E 
Sbjct: 22  SISPEPTRGRGGPKIIVRRTIKEANATIQYPTLTRTNYDEWAMLMQVNMEAAGIWYAVEP 81

Query: 74  KEGEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNVEH 133
              E +EYR + L  AAILR VP EM+ +L  K  A++AWD IK+ RVGV+RVRES  + 
Sbjct: 82  YPDEEVEYRDDRLALAAILRSVPSEMLPTLRGKRSARAAWDAIKTIRVGVERVRESKAQQ 141

Query: 134 LRKEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSSRR 193
           LR+EF+ + +K+ E+ + FS+RIT    N  +  +   D                     
Sbjct: 142 LRREFAALTWKEGETAEDFSVRITGLANNLRTLGDNISD--------------------- 201

Query: 194 SALRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKKNAASTID 253
                 ++ +KML V P HL+Q+ ++++TLLD+N +++EE+T RLR VEQR+  +A  ++
Sbjct: 202 -----ADVVRKMLDVVPEHLEQIAVAVETLLDLNTVSVEEVTGRLRAVEQRRHRSAPVVN 246

Query: 254 KQSRLLLTKEE 265
            Q RLLLT+EE
Sbjct: 262 NQGRLLLTQEE 246

[Close]

BLAST of CmaCh06G008530 vs. TrEMBL
Match: Q01HC5_ORYSA (H0807C06-H0308C08.8 protein OS=Oryza sativa GN=H0807C06-H0308C08.8 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 109/264 (41.29%), Postives = 155/264 (58.71%), Query Frame = 1


Query: 16  SPRSWRREDGRQVAVEHVIKE-TTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTFESK 75
           SPR  R     QV V+ V++E TT+S+ YP LTR+NY +W  +M VN+Q QGLW   E +
Sbjct: 84  SPRRGRHGGSGQVVVDRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVEPE 143

Query: 76  EGEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNVEHL 135
             ++++YR++     AILR VP EM+ +L+ K   Q AW+ IK+ R+GVQ VRE+N + L
Sbjct: 144 GDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQQL 203

Query: 136 RKEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSSRRS 195
           R+EF +I FKD E++D FSMRI     N  +  +                          
Sbjct: 204 RREFGDILFKDGETVDDFSMRIGVLANNLRTLGDN------------------------- 263

Query: 196 ALRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKKN----AAS 255
            +   E+ +K+LQV P HL Q+ ISI+TLLD+N+L++EE+T RLR+VEQ K+     A+S
Sbjct: 264 -ITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQSKQRKAVAASS 321

Query: 256 TIDKQSRLLLTKEESKEKAHVAQS 275
            +D    LL T+EE   K   A S
Sbjct: 324 RVDAYGCLLFTEEEWLAKFRKAAS 321

[Close]

BLAST of CmaCh06G008530 vs. TrEMBL
Match: Q7X7K3_ORYSJ (OSJNBb0046P18.1 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0046P18.1 PE=4 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 110/264 (41.67%), Postives = 154/264 (58.33%), Query Frame = 1


Query: 16  SPRSWRREDGRQVAVEHVIKE-TTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTFESK 75
           SPR  R     QV V  V++E TT+S+ YP LTR+NY +W  +M VN+Q QGLW   E +
Sbjct: 84  SPRRGRHGGRGQVVVHRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVEPE 143

Query: 76  EGEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNVEHL 135
             ++++YR++     AILR VP EM+ +L+ K   Q AW+ IK+ R+GVQ VRE+N + L
Sbjct: 144 GDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQQL 203

Query: 136 RKEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSSRRS 195
           R+EF +I FKD E++D FSMRI     N  +  +   D                      
Sbjct: 204 RREFGDIIFKDGETVDDFSMRIGVLANNLRTLGDNITD---------------------- 263

Query: 196 ALRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKKN----AAS 255
                E+ +K+LQV P HL Q+ ISI+TLLD+N+L++EE+T  LR+VEQRK+     A+S
Sbjct: 264 ----AEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGSLRSVEQRKQRKAVAASS 321

Query: 256 TIDKQSRLLLTKEESKEKAHVAQS 275
            +D    LL T+EE   K   A S
Sbjct: 324 RVDAYGCLLFTEEEWLAKFRKAAS 321

[Close]

BLAST of CmaCh06G008530 vs. TrEMBL
Match: C7J7K5_ORYSJ (Os10g0459550 protein OS=Oryza sativa subsp. japonica GN=Os10g0459550 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-35
Identity = 103/264 (39.02%), Postives = 146/264 (55.30%), Query Frame = 1


Query: 12  GPSSSPRSWRREDGRQVAVEHVIKETTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTF 71
           G   S        G+Q+ V+ V+KET  S+ YPMLTR+NY++W  +M VNLQ QGLW   
Sbjct: 49  GADGSGTDGGNNGGQQIIVQRVMKETAGSVVYPMLTRTNYTDWALVMRVNLQAQGLWSAI 108

Query: 72  ESKEGEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNV 131
           E    E   Y+ + +  +AILR VPPEM+ +L+ K  A+ AW+ +K+ RVGV RVRE+  
Sbjct: 109 EPGYAE---YQDDRMALSAILRAVPPEMLPTLAVKDTAKEAWESVKTMRVGVARVREAKA 168

Query: 132 EHLRKEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSS 191
           + LR EF  IR K+SES+D FSMR+     N                 G P         
Sbjct: 169 QTLRNEFELIRMKESESVDEFSMRLNAIVNNLRM-------------LGDP--------- 228

Query: 192 RRSALRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKKNAAST 251
               L   ++ +K L+V P    QV I+I+ LLD+  L++EE+T RLR VE+R +   + 
Sbjct: 229 ----LEEEKVVQKFLRVVPSRFVQVAIAIEQLLDLKTLSIEEVTGRLRTVEERYRPGDND 282

Query: 252 --IDKQSRLLLTKEESKEKAHVAQ 274
             +D   RLLLT+E+  E  +V +
Sbjct: 289 GGVD-GGRLLLTEEQWLEPTNVGE 282

[Close]

BLAST of CmaCh06G008530 vs. NCBI nr
Match: gi|38344222|emb|CAE03692.2| (OSJNBb0026E15.10 [Oryza sativa Japonica Group])

HSP 1 Score: 191.0 bits (484), Expect = 3.3e-45
Identity = 115/266 (43.23%), Postives = 160/266 (60.15%), Query Frame = 1


Query: 14  SSSPRSWRREDGRQVAVEHVIKE-TTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTFE 73
           S SPR  R     QV VE V++E TT+S+ YP LTR+NY +W  +M VN+Q Q LW   E
Sbjct: 19  SPSPRRGRHGGRGQVVVERVVREATTSSVVYPTLTRTNYQDWALVMRVNMQAQCLWGAVE 78

Query: 74  SKEGEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNVE 133
            +  ++++YR++    AAILR VP EM+ +L+ K  AQ AW+ IK+ R+GVQRVRE+N +
Sbjct: 79  PEGDDLVDYRQDQQALAAILRAVPAEMLATLAVKETAQEAWEAIKTRRIGVQRVREANAQ 138

Query: 134 HLRKEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSSR 193
            LR+EF +I FKD E++D FSMRI     N  +  +                        
Sbjct: 139 QLRREFGDILFKDDETVDDFSMRIGGLANNLRTLGDN----------------------- 198

Query: 194 RSALRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKK----NA 253
              +   E+ +K+LQV P HL Q+ ISI+TLLD+N+L++EE+T RLR+VEQRK+     A
Sbjct: 199 ---ITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQRKQCKTAAA 258

Query: 254 ASTIDKQSRLLLTKEESKEKAHVAQS 275
           +S +D   RLL T+EE   K   A S
Sbjct: 259 SSRVDANGRLLFTEEEWLAKFRKAAS 258

[Close]

BLAST of CmaCh06G008530 vs. NCBI nr
Match: gi|573921935|ref|XP_006648554.1| (PREDICTED: uncharacterized protein LOC102717319 [Oryza brachyantha])

HSP 1 Score: 189.9 bits (481), Expect = 7.4e-45
Identity = 111/249 (44.58%), Postives = 146/249 (58.63%), Query Frame = 1


Query: 16  SPRSWRREDGRQVAVEHVIKETTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTFESKE 75
           SP  + R  G       +++E++ S+QYP+LTR+NY EW  LM VNLQ QGLWH  E  E
Sbjct: 42  SPLRYERGRGYGTQPPRIVRESSGSIQYPVLTRTNYEEWALLMTVNLQAQGLWHAVEPYE 101

Query: 76  GEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNVEHLR 135
            E +EYR + L  AAILR VPPEM+ SLS K  +QSAW+ IK+ RVG +RVRE+N + LR
Sbjct: 102 DEEVEYRDDRLALAAILRAVPPEMLRSLSIKRTSQSAWEAIKTVRVGTRRVREANEQLLR 161

Query: 136 KEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSSRRSA 195
           +EF + RFKD E++D FSMR+     N                    TL           
Sbjct: 162 REFGDARFKDGENVDDFSMRLNGIANNIR------------------TLG--------GD 221

Query: 196 LRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKKNAASTIDKQ 255
           L   ++  K+L V P HL Q+ ISI+TLLD   L++EE+T RLR  E+RK      +D  
Sbjct: 222 LPEVDVVNKLLNVVPEHLSQIAISIETLLDARDLSIEEVTGRLRAAEKRKPKPKEIVDSG 264

Query: 256 SRLLLTKEE 265
            RLLLT+E+
Sbjct: 282 GRLLLTEEQ 264

[Close]

BLAST of CmaCh06G008530 vs. NCBI nr
Match: gi|113623687|dbj|BAF23632.1| (Os08g0389500 [Oryza sativa Japonica Group])

HSP 1 Score: 183.7 bits (465), Expect = 5.3e-43
Identity = 103/251 (41.04%), Postives = 150/251 (59.76%), Query Frame = 1


Query: 14  SSSPRSWRREDGRQVAVEHVIKETTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTFES 73
           S SP   R   G ++ V   IKE  A++QYP LTR+NY EW  LM VN++  G+W+  E 
Sbjct: 22  SISPEPTRGRGGPKIIVRRTIKEANATIQYPTLTRTNYDEWAMLMQVNMEAAGIWYAVEP 81

Query: 74  KEGEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNVEH 133
              E +EYR + L  AAILR VP EM+ +L  K  A++AWD IK+ RVGV+RVRES  + 
Sbjct: 82  YPDEEVEYRDDRLALAAILRSVPSEMLPTLRGKRSARAAWDAIKTIRVGVERVRESKAQQ 141

Query: 134 LRKEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSSRR 193
           LR+EF+ + +K+ E+ + FS+RIT    N  +  +   D                     
Sbjct: 142 LRREFAALTWKEGETAEDFSVRITGLANNLRTLGDNISD--------------------- 201

Query: 194 SALRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKKNAASTID 253
                 ++ +KML V P HL+Q+ ++++TLLD+N +++EE+T RLR VEQR+  +A  ++
Sbjct: 202 -----ADVVRKMLDVVPEHLEQIAVAVETLLDLNTVSVEEVTGRLRAVEQRRHRSAPVVN 246

Query: 254 KQSRLLLTKEE 265
            Q RLLLT+EE
Sbjct: 262 NQGRLLLTQEE 246

[Close]

BLAST of CmaCh06G008530 vs. NCBI nr
Match: gi|116311092|emb|CAH68021.1| (H0807C06-H0308C08.8 [Oryza sativa Indica Group])

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 109/264 (41.29%), Postives = 155/264 (58.71%), Query Frame = 1


Query: 16  SPRSWRREDGRQVAVEHVIKE-TTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTFESK 75
           SPR  R     QV V+ V++E TT+S+ YP LTR+NY +W  +M VN+Q QGLW   E +
Sbjct: 84  SPRRGRHGGSGQVVVDRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVEPE 143

Query: 76  EGEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNVEHL 135
             ++++YR++     AILR VP EM+ +L+ K   Q AW+ IK+ R+GVQ VRE+N + L
Sbjct: 144 GDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQQL 203

Query: 136 RKEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSSRRS 195
           R+EF +I FKD E++D FSMRI     N  +  +                          
Sbjct: 204 RREFGDILFKDGETVDDFSMRIGVLANNLRTLGDN------------------------- 263

Query: 196 ALRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKKN----AAS 255
            +   E+ +K+LQV P HL Q+ ISI+TLLD+N+L++EE+T RLR+VEQ K+     A+S
Sbjct: 264 -ITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQSKQRKAVAASS 321

Query: 256 TIDKQSRLLLTKEESKEKAHVAQS 275
            +D    LL T+EE   K   A S
Sbjct: 324 RVDAYGCLLFTEEEWLAKFRKAAS 321

[Close]

BLAST of CmaCh06G008530 vs. NCBI nr
Match: gi|38345433|emb|CAE03285.2| (OSJNBb0046P18.1 [Oryza sativa Japonica Group])

HSP 1 Score: 181.0 bits (458), Expect = 3.4e-42
Identity = 110/264 (41.67%), Postives = 154/264 (58.33%), Query Frame = 1


Query: 16  SPRSWRREDGRQVAVEHVIKE-TTASMQYPMLTRSNYSEWDWLMCVNLQMQGLWHTFESK 75
           SPR  R     QV V  V++E TT+S+ YP LTR+NY +W  +M VN+Q QGLW   E +
Sbjct: 84  SPRRGRHGGRGQVVVHRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVEPE 143

Query: 76  EGEMIEYRKEWLVFAAILRVVPPEMMVSLSTKSIAQSAWDGIKSHRVGVQRVRESNVEHL 135
             ++++YR++     AILR VP EM+ +L+ K   Q AW+ IK+ R+GVQ VRE+N + L
Sbjct: 144 GDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQQL 203

Query: 136 RKEFSEIRFKDSESIDAFSMRITKHQQNHHSWWERQQDRLVCSGCGSPTLSTYKRSSRRS 195
           R+EF +I FKD E++D FSMRI     N  +  +   D                      
Sbjct: 204 RREFGDIIFKDGETVDDFSMRIGVLANNLRTLGDNITD---------------------- 263

Query: 196 ALRTTEIEKKMLQVAPYHLDQVTISIKTLLDMNKLTMEEMTRRLRNVEQRKKN----AAS 255
                E+ +K+LQV P HL Q+ ISI+TLLD+N+L++EE+T  LR+VEQRK+     A+S
Sbjct: 264 ----AEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGSLRSVEQRKQRKAVAASS 321

Query: 256 TIDKQSRLLLTKEESKEKAHVAQS 275
            +D    LL T+EE   K   A S
Sbjct: 324 RVDAYGCLLFTEEEWLAKFRKAAS 321

The following BLAST results are available for this feature:

BLAST of CmaCh06G008530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G008530 vs. TrEMBL


Match Name	E-value	Identity	Description
Q7XPB1_ORYSJ	2.3e-45	43.23	OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=...	[more]
Q0J5Y3_ORYSJ	3.7e-43	41.04	Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1	[more]
Q01HC5_ORYSA	1.1e-42	41.29	H0807C06-H0308C08.8 protein OS=Oryza sativa GN=H0807C06-H0308C08.8 PE=4 SV=1	[more]
Q7X7K3_ORYSJ	2.4e-42	41.67	OSJNBb0046P18.1 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0046P18.1 PE=4 ...	[more]
C7J7K5_ORYSJ	2.8e-35	39.02	Os10g0459550 protein OS=Oryza sativa subsp. japonica GN=Os10g0459550 PE=4 SV=1	[more]

BLAST of CmaCh06G008530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh06G008530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|38344222\|emb\|CAE03692.2\|	3.3e-45	43.23	OSJNBb0026E15.10 [Oryza sativa Japonica Group]	[more]
gi\|573921935\|ref\|XP_006648554.1\|	7.4e-45	44.58	PREDICTED: uncharacterized protein LOC102717319 [Oryza brachyantha]	[more]
gi\|113623687\|dbj\|BAF23632.1\|	5.3e-43	41.04	Os08g0389500 [Oryza sativa Japonica Group]	[more]
gi\|116311092\|emb\|CAH68021.1\|	1.5e-42	41.29	H0807C06-H0308C08.8 [Oryza sativa Indica Group]	[more]
gi\|38345433\|emb\|CAE03285.2\|	3.4e-42	41.67	OSJNBb0046P18.1 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G008530.1	CmaCh06G008530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 224..258 scor
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..164 score: 2.9E-53coord: 191..279 score: 2.9E-53coord: 311..322 score: 2.9
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 191..279 score: 2.9E-53coord: 1..164 score: 2.9E-53coord: 311..322 score: 2.9
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 83..158 score: 8.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G008530	Cucumber (Gy14) v1	cgycmaB0031
CmaCh06G008530	Cucurbita moschata (Rifu)	cmacmoB808
CmaCh06G008530	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G008530	Wild cucumber (PI 183967)	cmacpiB832
CmaCh06G008530	Cucumber (Chinese Long) v2	cmacuB820
CmaCh06G008530	Melon (DHL92) v3.5.1	cmameB772
CmaCh06G008530	Watermelon (Charleston Gray)	cmawcgB722
CmaCh06G008530	Cucurbita pepo (Zucchini)	cmacpeB803
CmaCh06G008530	Cucurbita pepo (Zucchini)	cmacpeB804
CmaCh06G008530	Cucurbita pepo (Zucchini)	cmacpeB818
CmaCh06G008530	Bottle gourd (USVL1VR-Ls)	cmalsiB761
CmaCh06G008530	Cucumber (Gy14) v2	cgybcmaB433
CmaCh06G008530	Melon (DHL92) v3.6.1	cmamedB865
CmaCh06G008530	Silver-seed gourd	carcmaB0677
CmaCh06G008530	Cucumber (Chinese Long) v3	cmacucB0969
CmaCh06G008530	Watermelon (97103) v2	cmawmbB840
CmaCh06G008530	Wax gourd	cmawgoB0980
CmaCh06G008530	Cucurbita maxima (Rimu)	cmacmaB358