CmaCh06G006960 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G006960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Calcineurin B-like protein 3
Location	Cma_Chr06 : 3503563 .. 3504676 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCAGTTCATTAGAGGATTTTTTTTACTTCCCTACCAAGATGTGATCTTGACTTGTATAAGCAATCAAGAGGTCTTGACGATCCTGATCTTCTATCCAGGGAGACTGTGTATGTTTTTAATTCTCTTTTCTTTTCTTTGTGGATTGTGTACCTCTGAACTTTGTTAAATGATGCTAGTTTTCCATGATATGCAGTCAGTGTAAGTGAAATGGAAGCACTATATGAGCTTTTCAAGAAGAGAAGCAGCGCCGTGATTGATGATGGTCTGATCAACAAGGTATGTGCATCTCTTTCTGCCATTGGATAGGGATACTTTGATTTGTGGCTTTGGCAAAACTTTTTTTTTTCCTTCATAACAATATATATTGATCCTTGCAAAATTGAATGTACGTTATGTAAAGGGAAAGAGATAAACGTATAAAACATATGGAGCAGTTGCATTTATACTATGATTGGAACCTTTGTGTCTCTAACTATGTTCTTATAATGCCATGTTTTTAAGCAGCAAGGTGTTAAAGAGAGACGAGGTAAAGCTTTGTTCCCTGTGCTGAAGTTGTTGAGGAAGCTGATACAAAACATGAGGGAAGGATTGACAAGGAAAAGTGGAGAAACCTTGTTATGCCACATCCATCTCTCTTAAAGAACATGAATCACGTAAGTCAACCGTTTGTTCCAGTGAAACATCTCAAAATCAGTTTCTCGTTCTTGTTTTTGTGTAATGCCGTAAAGGGAAGCTCAAGAATGAACTTTAAGTGAATCTATCAGATCTAAATGTGCTATTTTTAGTCTTCTGATGAGGATTTACGCTCAATATTAGCAATGATTATGGGGTATTTTCATTGCTCTAGCTGTGTTATGTTATAATCTGGGGCATTTTGCTGAGCAGGGACATCACCACGACTTTCCCGAGCGATGTTGCCTGAGGTTGTGTTCATCATCTGCAGTTGAAGTGTCTACTATTTGATCACGGTTTGCACAATTGATGTATGTAGGCCATTTCTTGGAGGGGAAAATCTTGAATTTTCTCTTCGCATGGGTTGTTCCTCGAGTTGTAAAACACATTACTGTAAATACCACATTTTAAAATATTCATGAACTTTTAACTCTCTC

mRNA sequence

ATGCTGCAGTTCATTAGAGGATTTTTTTTACTTCCCTACCAAGATGTGATCTTGACTTGTATAAGCAATCAAGAGGTCTTGACGATCCTGATCTTCTATCCAGGGAGACTGTTCAGTGTAAGTGAAATGGAAGCACTATATGAGCTTTTCAAGAAGAGAAGCAGCGCCGTGATTGATGATGGTCTGATCAACAAGCAAGGTGTTAAAGAGAGACGAGGAAAAGTGGAGAAACCTTGTTATGCCACATCCATCTCTCTTAAAGAACATGAATCACGGACATCACCACGACTTTCCCGAGCGATGTTGCCTGAGGTTGTGTTCATCATCTGCAGTTGAAGTGTCTACTATTTGATCACGGTTTGCACAATTGATGTATGTAGGCCATTTCTTGGAGGGGAAAATCTTGAATTTTCTCTTCGCATGGGTTGTTCCTCGAGTTGTAAAACACATTACTGTAAATACCACATTTTAAAATATTCATGAACTTTTAACTCTCTC

Coding sequence (CDS)

ATGCTGCAGTTCATTAGAGGATTTTTTTTACTTCCCTACCAAGATGTGATCTTGACTTGTATAAGCAATCAAGAGGTCTTGACGATCCTGATCTTCTATCCAGGGAGACTGTTCAGTGTAAGTGAAATGGAAGCACTATATGAGCTTTTCAAGAAGAGAAGCAGCGCCGTGATTGATGATGGTCTGATCAACAAGCAAGGTGTTAAAGAGAGACGAGGAAAAGTGGAGAAACCTTGTTATGCCACATCCATCTCTCTTAAAGAACATGAATCACGGACATCACCACGACTTTCCCGAGCGATGTTGCCTGAGGTTGTGTTCATCATCTGCAGTTGA

Protein sequence

MLQFIRGFFLLPYQDVILTCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDDGLINKQGVKERRGKVEKPCYATSISLKEHESRTSPRLSRAMLPEVVFIICS

Homology

[Close]

BLAST of CmaCh06G006960 vs. Swiss-Prot
Match: CNBL2_ORYSJ (Calcineurin B-like protein 2 OS=Oryza sativa subsp. japonica GN=CBL2 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 40 VFSVSEVEALYELFKKISSAVIDDGLINKE 69

[Close]

BLAST of CmaCh06G006960 vs. Swiss-Prot
Match: CNBL3_ARATH (Calcineurin B-like protein 3 OS=Arabidopsis thaliana GN=CBL3 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. Swiss-Prot
Match: CNBL3_ORYSJ (Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica GN=CBL3 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 40 VFSVSEVEALYELFKKISSAVIDDGLINKE 69

[Close]

BLAST of CmaCh06G006960 vs. Swiss-Prot
Match: CNBL2_ARATH (Calcineurin B-like protein 2 OS=Arabidopsis thaliana GN=CBL2 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. TAIR10
Match: AT4G26570.2 (AT4G26570.2 calcineurin B-like 3)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. TAIR10
Match: AT5G55990.1 (AT5G55990.1 calcineurin B-like protein 2)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. TAIR10
Match: AT5G47100.1 (AT5G47100.1 calcineurin B-like protein 9)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 38 FSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          FSVSE+EALYELFK  SS+V+DDGLINK+
Sbjct: 27 FSVSEVEALYELFKSISSSVVDDGLINKE 55

[Close]

BLAST of CmaCh06G006960 vs. TAIR10
Match: AT4G17615.1 (AT4G17615.1 calcineurin B-like protein 1)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-06
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 38 FSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          FSVSE+EAL+ELFK  SS+V+DDGLINK+
Sbjct: 27 FSVSEVEALFELFKSISSSVVDDGLINKE 55

[Close]

BLAST of CmaCh06G006960 vs. TAIR10
Match: AT4G33000.1 (AT4G33000.1 calcineurin B-like protein 10)

HSP 1 Score: 47.0 bits (110), Expect = 8.9e-06
Identity = 21/32 (65.62%), Postives = 29/32 (90.62%), Query Frame = 1


Query: 38  FSVSEMEALYELFKKRSSAVIDDGLINKQGVK 70
           FSV+E+EALYELFKK S ++IDDGLI+K+ ++
Sbjct: 73  FSVNEVEALYELFKKLSCSIIDDGLIHKEELR 104

The following BLAST results are available for this feature:

BLAST of CmaCh06G006960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CNBL2_ORYSJ	2.2e-06	86.67	Calcineurin B-like protein 2 OS=Oryza sativa subsp. japonica GN=CBL2 PE=2 SV=1	[more]
CNBL3_ARATH	2.2e-06	86.67	Calcineurin B-like protein 3 OS=Arabidopsis thaliana GN=CBL3 PE=1 SV=2	[more]
CNBL3_ORYSJ	2.2e-06	86.67	Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica GN=CBL3 PE=1 SV=1	[more]
CNBL2_ARATH	2.2e-06	86.67	Calcineurin B-like protein 2 OS=Arabidopsis thaliana GN=CBL2 PE=1 SV=2	[more]

BLAST of CmaCh06G006960 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmaCh06G006960 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26570.2	1.2e-07	86.67	calcineurin B-like 3	[more]
AT5G55990.1	1.2e-07	86.67	calcineurin B-like protein 2	[more]
AT5G47100.1	1.8e-06	79.31	calcineurin B-like protein 9	[more]
AT4G17615.1	5.2e-06	75.86	calcineurin B-like protein 1	[more]
AT4G33000.1	8.9e-06	65.63	calcineurin B-like protein 10	[more]

BLAST of CmaCh06G006960 vs. NCBI nr


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G006960.1	CmaCh06G006960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23056	CALCINEURIN B	coord: 37..66 score: 3.6
None	No IPR available	PANTHER	PTHR23056:SF44	CALCINEURIN B-LIKE PROTEIN 2	coord: 37..66 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G006960	Cucumber (Chinese Long) v3	cmacucB0974
CmaCh06G006960	Cucumber (Chinese Long) v3	cmacucB0975
CmaCh06G006960	Watermelon (97103) v2	cmawmbB843
CmaCh06G006960	Watermelon (97103) v2	cmawmbB845
CmaCh06G006960	Wax gourd	cmawgoB0985
CmaCh06G006960	Wax gourd	cmawgoB0988
CmaCh06G006960	Wax gourd	cmawgoB0995
CmaCh06G006960	Cucurbita maxima (Rimu)	cmacmaB354
CmaCh06G006960	Cucumber (Gy14) v1	cgycmaB0032
CmaCh06G006960	Cucumber (Gy14) v1	cgycmaB0033
CmaCh06G006960	Cucurbita moschata (Rifu)	cmacmoB804
CmaCh06G006960	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G006960	Wild cucumber (PI 183967)	cmacpiB837
CmaCh06G006960	Wild cucumber (PI 183967)	cmacpiB838
CmaCh06G006960	Cucumber (Chinese Long) v2	cmacuB824
CmaCh06G006960	Cucumber (Chinese Long) v2	cmacuB825
CmaCh06G006960	Melon (DHL92) v3.5.1	cmameB764
CmaCh06G006960	Watermelon (Charleston Gray)	cmawcgB725
CmaCh06G006960	Watermelon (Charleston Gray)	cmawcgB727
CmaCh06G006960	Watermelon (Charleston Gray)	cmawcgB730
CmaCh06G006960	Watermelon (97103) v1	cmawmB783
CmaCh06G006960	Cucurbita pepo (Zucchini)	cmacpeB814
CmaCh06G006960	Cucurbita pepo (Zucchini)	cmacpeB852
CmaCh06G006960	Bottle gourd (USVL1VR-Ls)	cmalsiB775
CmaCh06G006960	Cucumber (Gy14) v2	cgybcmaB437
CmaCh06G006960	Cucumber (Gy14) v2	cgybcmaB438
CmaCh06G006960	Melon (DHL92) v3.6.1	cmamedB868
CmaCh06G006960	Melon (DHL92) v3.6.1	cmamedB869