CmaCh06G006030 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G006030
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr06 : 2922764 .. 2923113 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAATTGCAGCCCGGTGGTTTGTAACATGCCACACCTTGATAAAATCTACTGACCTGTATTCTCTTTATCATTCATGAATATTTGTTCTAACTCTTTGACGTTGTTGTGAAGTATCAGATATTTGAGGGCTTGGATATAAAGGGCATTTTATATTTTCTCAAGATATGGAGCTTGCTTCTGTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAGTGGTCAAGTTCATCTAAATGATCAGCACAGGAGGCGTAATGAAATTACTTTTTGA

mRNA sequence

ATGATAAATTGCAGCCCGGTGTATCAGATATTTGAGGGCTTGGATATAAAGGGCATTTTATATTTTCTCAAGATATGGAGCTTGCTTCTGTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAGTGGTCAAGTTCATCTAAATGATCAGCACAGGAGGCGTAATGAAATTACTTTTTGA

Coding sequence (CDS)

ATGATAAATTGCAGCCCGGTGTATCAGATATTTGAGGGCTTGGATATAAAGGGCATTTTATATTTTCTCAAGATATGGAGCTTGCTTCTGTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAGTGGTCAAGTTCATCTAAATGATCAGCACAGGAGGCGTAATGAAATTACTTTTTGA

Protein sequence

MINCSPVYQIFEGLDIKGILYFLKIWSLLLFGQIPSGIKFVLSRKCLTGVSLFLEIFFWFPLSIALSGQVHLNDQHRRRNEITF

Homology

[Close]

BLAST of CmaCh06G006030 vs. TrEMBL
Match: A0A0A0L3S6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005575 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-16
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1


Query: 10 IFEGLDIKGILYFLKIWSLLLFGQIPSGIKFVLSRKCLTGVSLFLEIFFW 60
          +FEGLDIKG LYFL+IWSLLLFGQIPS I+FVLSRKCL GVS FLEIFFW
Sbjct: 7  VFEGLDIKGFLYFLEIWSLLLFGQIPSSIEFVLSRKCLIGVSSFLEIFFW 56

[Close]

BLAST of CmaCh06G006030 vs. TrEMBL
Match: D7U3Y0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0033g01100 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.3e-09
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 8  YQIFEGLDIKGILYFLKIWSLLLFGQIPSGIKFVLSRKCLTGVSLFLEIFFWFPLSIALS 67
          + +   LD++ +L FLK WS    GQ+ +  +F  SRKC TG    LEI F F LSIALS
Sbjct: 5  FLVLRDLDLEDLLSFLKTWSKCASGQLATSFEFFHSRKCSTGGFSPLEISFLFLLSIALS 64

Query: 68 GQVHLNDQHRRRNEITF 85
           Q++L+DQH R N I F
Sbjct: 65 AQLYLDDQHNRPNAIFF 81

[Close]

BLAST of CmaCh06G006030 vs. TrEMBL
Match: K7K3Y6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.9e-07
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1


Query: 13  GLDIKGILYFLKIWSLLLFGQIPSGIKFVLSRKCLTGVSLFLEIFFWFPLSIALSGQVHL 72
           GL++K +    +IW   + GQI + I F+ S+KCL G    LEIFF FPL IAL   +  
Sbjct: 40  GLNLKNLDLHFEIWREFVSGQIATSIGFLHSKKCLIGEFSSLEIFFGFPLLIALRVLLRF 99

Query: 73  NDQHRRRNEITF 85
           NDQHR R+   F
Sbjct: 100 NDQHRVRDATFF 111

[Close]

BLAST of CmaCh06G006030 vs. TrEMBL
Match: A0A0R0LAT5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G149100 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.9e-07
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1


Query: 13 GLDIKGILYFLKIWSLLLFGQIPSGIKFVLSRKCLTGVSLFLEIFFWFPLSIALSGQVHL 72
          GL++K +    +IW   + GQI + I F+ S+KCL G    LEIFF FPL IAL   +  
Sbjct: 8  GLNLKNLDLHFEIWREFVSGQIATSIGFLHSKKCLIGEFSSLEIFFGFPLLIALRVLLRF 67

Query: 73 NDQHRRRNEITF 85
          NDQHR R+   F
Sbjct: 68 NDQHRVRDATFF 79

[Close]

BLAST of CmaCh06G006030 vs. NCBI nr
Match: gi|700200561|gb|KGN55694.1| (hypothetical protein Csa_3G005575 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1


Query: 10 IFEGLDIKGILYFLKIWSLLLFGQIPSGIKFVLSRKCLTGVSLFLEIFFW 60
          +FEGLDIKG LYFL+IWSLLLFGQIPS I+FVLSRKCL GVS FLEIFFW
Sbjct: 7  VFEGLDIKGFLYFLEIWSLLLFGQIPSSIEFVLSRKCLIGVSSFLEIFFW 56

[Close]

BLAST of CmaCh06G006030 vs. NCBI nr
Match: gi|296088458|emb|CBI37449.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-09
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 8  YQIFEGLDIKGILYFLKIWSLLLFGQIPSGIKFVLSRKCLTGVSLFLEIFFWFPLSIALS 67
          + +   LD++ +L FLK WS    GQ+ +  +F  SRKC TG    LEI F F LSIALS
Sbjct: 5  FLVLRDLDLEDLLSFLKTWSKCASGQLATSFEFFHSRKCSTGGFSPLEISFLFLLSIALS 64

Query: 68 GQVHLNDQHRRRNEITF 85
           Q++L+DQH R N I F
Sbjct: 65 AQLYLDDQHNRPNAIFF 81

[Close]

BLAST of CmaCh06G006030 vs. NCBI nr
Match: gi|947128524|gb|KRH76378.1| (hypothetical protein GLYMA_01G149100 [Glycine max])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1


Query: 13 GLDIKGILYFLKIWSLLLFGQIPSGIKFVLSRKCLTGVSLFLEIFFWFPLSIALSGQVHL 72
          GL++K +    +IW   + GQI + I F+ S+KCL G    LEIFF FPL IAL   +  
Sbjct: 8  GLNLKNLDLHFEIWREFVSGQIATSIGFLHSKKCLIGEFSSLEIFFGFPLLIALRVLLRF 67

Query: 73 NDQHRRRNEITF 85
          NDQHR R+   F
Sbjct: 68 NDQHRVRDATFF 79

The following BLAST results are available for this feature:

BLAST of CmaCh06G006030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G006030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3S6_CUCSA	8.0e-16	86.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005575 PE=4 SV=1	[more]
D7U3Y0_VITVI	3.3e-09	48.05	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0033g01100 PE=4 SV=...	[more]
K7K3Y6_SOYBN	8.9e-07	45.83	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0LAT5_SOYBN	8.9e-07	45.83	Uncharacterized protein OS=Glycine max GN=GLYMA_01G149100 PE=4 SV=1	[more]

BLAST of CmaCh06G006030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh06G006030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200561\|gb\|KGN55694.1\|	1.2e-15	86.00	hypothetical protein Csa_3G005575 [Cucumis sativus]	[more]
gi\|296088458\|emb\|CBI37449.3\|	4.7e-09	48.05	unnamed protein product [Vitis vinifera]	[more]
gi\|947128524\|gb\|KRH76378.1\|	1.3e-06	45.83	hypothetical protein GLYMA_01G149100 [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G006030.1	CmaCh06G006030.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G006030	CmoCh06G006100	Cucurbita moschata (Rifu)	cmacmoB829

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G006030	Silver-seed gourd	carcmaB0957
CmaCh06G006030	Silver-seed gourd	carcmaB1454
CmaCh06G006030	Cucumber (Chinese Long) v3	cmacucB0967
CmaCh06G006030	Watermelon (97103) v2	cmawmbB839
CmaCh06G006030	Cucurbita maxima (Rimu)	cmacmaB357
CmaCh06G006030	Cucumber (Gy14) v1	cgycmaB0899
CmaCh06G006030	Cucurbita moschata (Rifu)	cmacmoB807
CmaCh06G006030	Wild cucumber (PI 183967)	cmacpiB829
CmaCh06G006030	Cucumber (Chinese Long) v2	cmacuB817
CmaCh06G006030	Melon (DHL92) v3.5.1	cmameB768
CmaCh06G006030	Watermelon (Charleston Gray)	cmawcgB721
CmaCh06G006030	Watermelon (97103) v1	cmawmB789
CmaCh06G006030	Cucurbita pepo (Zucchini)	cmacpeB817
CmaCh06G006030	Cucurbita pepo (Zucchini)	cmacpeB852
CmaCh06G006030	Bottle gourd (USVL1VR-Ls)	cmalsiB772
CmaCh06G006030	Cucumber (Gy14) v2	cgybcmaB429
CmaCh06G006030	Melon (DHL92) v3.6.1	cmamedB864