CmaCh06G001740 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G001740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coiled-coil domain-containing protein, putative
Location	Cma_Chr06 : 873240 .. 875907 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCAAATTATTATGGTATGATTCATAGCTATACGTTGCACGAGCGTGTATGTCTAAGTTAAAAGCTTTGTGTTCGTGAGAATCTAAAACTCATCGACGTAAGCAAAAGAGATCGTTTGGTTTAAGGTCTATGTAAATGTATATCACCGTGGATAATAAACATACGGAAATATGCATTGTCAACCGTGTTCCAGCTTCCTATTTAGTCAACTCTACGGACCATTGGCTCGTTGACTTAGCTACACAAGTCACTTACGAATCATTAAATGTATGGATAAAATTAGTAGGATAAGACAAAAGTATGAATACAGTGTGAACCATTTATTGAACATGGTGCGTGTGTGTCCACCAATAAATATTTTGCATTAATAATTTTAATTTTTTATAAATAGATAATGTTGGAAATAAAACAATCAAAATAATTACAAATTATAAGCTAAATTTAAAGTTAAAAGAAAAAATTTGAAAGTTTTTTTTTTTTTTTTTTTTAAATATATATATTTTTTATAAAACAGATAATATAATATAAAAAGGAAACCGTGAAAAATTAAGATAAAATCGTAAAAAAATATAATTAATTAATTAATTTAGATATTAAAAAATGTAAAATACAATGTTTTTTTTTTTTTTTTTTTATCAGGTTTAAAATTTATATTAAAGATAAAAAAAATTAAATAAATTCACACACAATTCAAATTTTATTTTTAAATTCGATCTAAAAAAACTCTATTTATAGAACACTCCCGCTCTCCACTTTGTAAATGAAATAAAAATAGTTCAGTGCTTTAGCCGTCTCCTCTGGCAGTTCAGTGACGCCGCCGCCGCTGCTCCTTTTTCCAGTTCAGTGCTTCCGCCGCCGCTGTCCCCTGTTTCCGTTCAGTCCTTTCGCCGCCATCTTCCTCGTGCCGGCGTAGCATCACTCAGATAAAATGGGAGAGAGGTAAGTTATTAACAAATACTACTCACCCGATTTTGATCCATCGAACGGGTTCATACGCCCAAAAATAGCCAAATCAAGGTCCGTATGATGCTCCCGATGAGCATCCGATGCAATACCTGTGCTAATTAGTACCAAATTCAATTCTCGCAAGGAGATCGTCTTTGGTGAGGTAAAGAATGCCTTACATACTCTTTTTCCTTTGATTTGTTCTTATTGTTATTAATTTTCTTATGCTTTTTTTACCAGACATATATAGGAATTCGGATGTTCAGATTTTATTTTAAATGTACCGGATGTTCTGCTGAGCTGATCATCAAAACAGACCCTCGAAACTCCGATTATATCGTAGAATCGAGAGTGACAAGCAATTTTGAACCATGTGAGAATCGCAAAAGAAAAGCAGAAGAGTATTTGGTGTGCATTTGTTTTGCTAAGGTAATAACTATCGAGGGAAGCTACTTTGTTGAGGTAAATTTCTCATTACTATTTGAATCAACGACACGAACAATGGACTTGAGTCATTGTGTCAAAACTATGGTAGTGATGAAGATTGATGTAGTTTTATGTCGGTTTAGGTCATAATTTCCTCGATTAATGTCATTTCAATGGTGATGTTTGTACACTGATTTGATTTTGGGGGTATAATTCTTATAATTCTTTCTTTAAATTTATAAATTTGTAATTATTTTCCCTCTTAAATTAGAGATTATACGGATTTTTCTATTTCTGAAAACAATAAACATATTGTTTTTTGAGATGAAACCTGAAGTCTCATTTTTTTAATTTTATTTTATAAATATAAATAAATAAATAAATATATATATATATATATATATATATATATATATAATAAATTTCTTAATAATAATTATAAAACTACATTTTAAATAGAAATTCATTAAATTATTTGTTAATAAATGAAAATTAATAATTAATATATTTTTAAATTAGGCTCAATCTCTGGGTATTGTGAGGCCGGCAACTAAACTGGGTGCCCTTTGTCTTTAGCATTTAGCCTTTACTTTGCTTCACATTTAAAACACTCTCGTGACTCCCACCACTGCTTCGCGCTCGCTTTCTCTCCCTCTCTCTCTCCTTCTTCTTCTCCCCTTTCATTTGGGTTTTCTTCTACCACCCGGCGGGCAGCGACTCCTCAGATCTCTCCACCAACCCTCATTTGCTTCCAAAAGATTACAAATCCCATTCCTCATTTTCCTTCCATCTGCAATTAATCGTTCATTCTTCAACCTCTGTCAATTGTTCGTTCTCTGCATTTACTCTCACATTTTTTCTTGTTATGAACAGATGATTTTCTTGCATTGCTCTTTAACTTCACTGGATCTATTTTCTTGTAGCTCATTTGCGTTTTATGTATACTTCTTTTGTTCTTCCAGTAATTGATGTGTACCTAGTCCAGTGCGTTTCAATTTGTTGTTTTCTCTCACTTTCTAGTGGTGCCCTTCGATTAACAATGGGTTTTATATTAGAGTTCGAGAATGATTTTCATTTTGGACTAATTTGCTTTAATGTCATCAGTTCGTCAATTTCTATACTATCTCTTTGTCTGCTTCCCTTCATGTTCTTATTCGATCGTGATTGAAATTGACCTTTTCAATTGTGGGTTTGTGGAGCATTTTCAGGAGTTAAACTCCATATATCATGGTCGATGATGCTGATAACCTTGGCCCCGTTTCTGCAGTTTTAATTTACAGGGATCATCCTGA

mRNA sequence

ATGGCCCCAAATTATTATGGTATGATTCATAGCTATACGTTGCACGAGCGTTTCAGTGCTTTAGCCGTCTCCTCTGGCAGTTCAGTGACGCCGCCGCCGCTGCTCCTTTTTCCAGTTCAGTGCTTCCGCCGCCGCTGTCCCCTGTTTCCGTTCAGTCCTTTCGCCGCCATCTTCCTCGTGCCGGCTACCAAATTCAATTCTCGCAAGGAGATCGTCTTTGGTGAGACATATATAGGAATTCGGATGTTCAGATTTTATTTTAAATGTACCGGATGTTCTGCTGAGCTGATCATCAAAACAGACCCTCGAAACTCCGATTATATCGTAGAATCGAGAGTGACAAGCAATTTTGAACCATGTGAGAATCGCAAAAGAAAAGCAGAAGAGTATTTGGTGTGCATTTGTTTTGCTAAGCGACTCCTCAGATCTCTCCACCAACCCTCATTTGCTTCCAAAAGATTACAAATCCCATTCCTCATTTTCCTTCCATCTGCAATTAATCGTTCATTCTTCAACCTCTGTCAATTTTTTAATTTACAGGGATCATCCTGA

Coding sequence (CDS)

ATGGCCCCAAATTATTATGGTATGATTCATAGCTATACGTTGCACGAGCGTTTCAGTGCTTTAGCCGTCTCCTCTGGCAGTTCAGTGACGCCGCCGCCGCTGCTCCTTTTTCCAGTTCAGTGCTTCCGCCGCCGCTGTCCCCTGTTTCCGTTCAGTCCTTTCGCCGCCATCTTCCTCGTGCCGGCTACCAAATTCAATTCTCGCAAGGAGATCGTCTTTGGTGAGACATATATAGGAATTCGGATGTTCAGATTTTATTTTAAATGTACCGGATGTTCTGCTGAGCTGATCATCAAAACAGACCCTCGAAACTCCGATTATATCGTAGAATCGAGAGTGACAAGCAATTTTGAACCATGTGAGAATCGCAAAAGAAAAGCAGAAGAGTATTTGGTGTGCATTTGTTTTGCTAAGCGACTCCTCAGATCTCTCCACCAACCCTCATTTGCTTCCAAAAGATTACAAATCCCATTCCTCATTTTCCTTCCATCTGCAATTAATCGTTCATTCTTCAACCTCTGTCAATTTTTTAATTTACAGGGATCATCCTGA

Protein sequence

MAPNYYGMIHSYTLHERFSALAVSSGSSVTPPPLLLFPVQCFRRRCPLFPFSPFAAIFLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNFEPCENRKRKAEEYLVCICFAKRLLRSLHQPSFASKRLQIPFLIFLPSAINRSFFNLCQFFNLQGSS

Homology

[Close]

BLAST of CmaCh06G001740 vs. Swiss-Prot
Match: CCD94_DICDI (Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=ccdc94 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 1


Query: 63  TKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNFEPCE- 122
           TKFN++KE V  E Y+GI+++RF+ +C  C+AEL IKTDP+NS+Y+ ES  T N+EP + 
Sbjct: 54  TKFNAKKETVQNEDYLGIKIYRFFLRCKKCAAELTIKTDPKNSEYVCESGATRNYEPWKE 113

Query: 123 ------NR--KRKAEEYLVCICFAKRLLRS 144
                 NR  K + EE    I    R L S
Sbjct: 114 TDEEKSNRMTKEQEEEQDAMIALENRTLES 143

[Close]

BLAST of CmaCh06G001740 vs. Swiss-Prot
Match: CCD94_HUMAN (Coiled-coil domain-containing protein 94 OS=Homo sapiens GN=CCDC94 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++    KFN+RKE V  E Y+G+ +FRFY KCT C AE+  KTDP N+DY +E   T NF
Sbjct: 49  YIYKGKKFNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNF 108

Query: 118 E 119
           +
Sbjct: 109 Q 109

[Close]

BLAST of CmaCh06G001740 vs. Swiss-Prot
Match: CCD94_MOUSE (Coiled-coil domain-containing protein 94 OS=Mus musculus GN=Ccdc94 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++    KFN+RKE V  E Y+G+ +FRFY KCT C AE+  KTDP N+DY +E   T NF
Sbjct: 49  YIYKGKKFNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNF 108

Query: 118 E 119
           +
Sbjct: 109 Q 109

[Close]

BLAST of CmaCh06G001740 vs. Swiss-Prot
Match: CWF16_SCHPO (Pre-mRNA-splicing factor cwf16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf16 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 5.4e-10
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++    KFN+RKE   GE Y  I + RFY +CT C+AE+   TDP+++DY  ES  + N+
Sbjct: 54  YIYKGKKFNARKEKT-GEKYFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASRNY 113

Query: 118 EPC-ENRKRKAEE 130
           EP  E R ++ EE
Sbjct: 114 EPWHEKRLQEYEE 125

[Close]

BLAST of CmaCh06G001740 vs. TrEMBL
Match: A0A0J8CV91_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g036060 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.0e-20
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 63  TKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNFEPCEN 122
           TKFNSRKE V GETY+GI++FRFYFKCT CSAELIIKTDP+NSDY+VE+  T NFEPC +
Sbjct: 28  TKFNSRKEDVIGETYLGIQIFRFYFKCTECSAELIIKTDPQNSDYVVEAGATRNFEPCRD 87

Query: 123 R--KRKAEE 130
           +  ++K +E
Sbjct: 88  QAEEKKLDE 96

[Close]

BLAST of CmaCh06G001740 vs. TrEMBL
Match: A0A0K9R2D6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114600 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.0e-20
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++   TKFNSRKE V GETY+GI++FRFYFKCT CSAEL+IKTDP+NSDY+VE+  T NF
Sbjct: 31  YINKGTKFNSRKEDVIGETYLGIQVFRFYFKCTKCSAELVIKTDPKNSDYVVEAGATRNF 90

Query: 118 EPCENRKRKAEE 130
           EP  N+  + E+
Sbjct: 91  EPWRNKDEEIEK 102

[Close]

BLAST of CmaCh06G001740 vs. TrEMBL
Match: W9QZD4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014905 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-19
Identity = 56/105 (53.33%), Postives = 67/105 (63.81%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++   TKFNSRKE V GETY+GI++FRFYFKCT CSAEL +KTDP+NSDY+VES  T NF
Sbjct: 49  YIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTKCSAELAMKTDPQNSDYVVESGATRNF 108

Query: 118 EPCEN---------RKRKAEEYLVCICFAKRLLRSLHQPSFASKR 154
           EP  N         RKR+ EE           +RSL   +  SKR
Sbjct: 109 EPWRNEDEEVDKEKRKREEEE-------MGDAMRSLENRTLDSKR 146

[Close]

BLAST of CmaCh06G001740 vs. TrEMBL
Match: A0A067JTY6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01693 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-19
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++   TKFNSRKE V GETY+GI++FRFYFKCT CSAEL +KTDP+NSDY+VES  T NF
Sbjct: 49  YIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNF 108

Query: 118 EPC---------ENRKRKAEE 130
           EP          E RKR AEE
Sbjct: 109 EPWRAEDEEADKEQRKRDAEE 129

[Close]

BLAST of CmaCh06G001740 vs. TrEMBL
Match: A0A0A0KL62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003615 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-19
Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++   TKFNSRKE V GETY+GI++FRFYFKCT CSAEL IKTDP+NSDY+VES  T NF
Sbjct: 49  YIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGATRNF 108

Query: 118 EPC---------ENRKRKAEE 130
           EP          E  KR AEE
Sbjct: 109 EPWREEDEASEKEKHKRNAEE 129

[Close]

BLAST of CmaCh06G001740 vs. TAIR10
Match: AT1G17130.2 (AT1G17130.2 Family of unknown function (DUF572) )

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-19
Identity = 48/88 (54.55%), Postives = 59/88 (67.05%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGE-------TYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVE 117
           ++   TKFNSRKE V GE       TY+GI++FRFYFKCT CSAEL +KTDP+NSDYIVE
Sbjct: 49  YIYKGTKFNSRKEDVIGENFSFDVQTYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVE 108

Query: 118 SRVTSNFEPC---------ENRKRKAEE 130
           S  + N+EP          + +KR AEE
Sbjct: 109 SGASRNYEPWRAEDEEVDKDKQKRDAEE 136

[Close]

BLAST of CmaCh06G001740 vs. TAIR10
Match: AT2G32050.1 (AT2G32050.1 Family of unknown function (DUF572) )

HSP 1 Score: 77.8 bits (190), Expect = 7.7e-15
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++   TK N R+E V GETY+GI++ RFYFKC+ C  ELI+KTDP+NS Y+ ES  T  +
Sbjct: 49  YMSEGTKINCREENVIGETYLGIKIHRFYFKCSKCCTELILKTDPKNSSYVAESGATCVY 108

Query: 118 EPCENRKR 126
           +  E  ++
Sbjct: 109 DQHEEEEQ 116

[Close]

BLAST of CmaCh06G001740 vs. TAIR10
Match: AT3G43250.1 (AT3G43250.1 Family of unknown function (DUF572) )

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-14
Identity = 42/99 (42.42%), Postives = 54/99 (54.55%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVT--- 117
           ++   TKFN R+E V  ETY+G+++ RFY KCT C AEL IKTDP+N  Y VES  +   
Sbjct: 49  YMSEGTKFNCRQEDVITETYLGLKIHRFYIKCTKCLAELTIKTDPKNHSYTVESGASCLY 108

Query: 118 SNFEPCENRKRKAEEYLVCICFAKRLLRSLHQPSFASKR 154
           +  E  E  K+K  E           L SL   +  SKR
Sbjct: 109 NGHEDIEEEKKKKHE---------NALESLENRTVVSKR 138

[Close]

BLAST of CmaCh06G001740 vs. TAIR10
Match: AT2G29430.1 (AT2G29430.1 Family of unknown function (DUF572) )

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 63  TKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVT 115
           TKF SR E V GETY+GI++FRF  +CT  S E+  +TDP+N+D+I+ES  T
Sbjct: 27  TKFTSRVEDVIGETYLGIKIFRFQIQCTNGSHEMKFRTDPKNADFIIESGAT 78

[Close]

BLAST of CmaCh06G001740 vs. NCBI nr
Match: gi|719971482|ref|XP_010274808.1| (PREDICTED: coiled-coil domain-containing protein 94 homolog [Nelumbo nucifera])

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++   TKFNSRKE V GETY+GI+MFRFYFKCT CSAEL IKTDP+NSDY+VES  T NF
Sbjct: 49  YIYKGTKFNSRKEDVIGETYLGIQMFRFYFKCTKCSAELTIKTDPQNSDYVVESGATRNF 108

Query: 118 EPC---------ENRKRKAEE 130
           EP          E RKR AEE
Sbjct: 109 EPWRAEDEEEEKEKRKRDAEE 129

[Close]

BLAST of CmaCh06G001740 vs. NCBI nr
Match: gi|902198437|gb|KNA13668.1| (hypothetical protein SOVF_114600 [Spinacia oleracea])

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++   TKFNSRKE V GETY+GI++FRFYFKCT CSAEL+IKTDP+NSDY+VE+  T NF
Sbjct: 31  YINKGTKFNSRKEDVIGETYLGIQVFRFYFKCTKCSAELVIKTDPKNSDYVVEAGATRNF 90

Query: 118 EPCENRKRKAEE 130
           EP  N+  + E+
Sbjct: 91  EPWRNKDEEIEK 102

[Close]

BLAST of CmaCh06G001740 vs. NCBI nr
Match: gi|731318270|ref|XP_010669630.1| (PREDICTED: coiled-coil domain-containing protein 94 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 63  TKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNFEPCEN 122
           TKFNSRKE V GETY+GI++FRFYFKCT CSAELIIKTDP+NSDY+VE+  T NFEPC +
Sbjct: 28  TKFNSRKEDVIGETYLGIQIFRFYFKCTECSAELIIKTDPQNSDYVVEAGATRNFEPCRD 87

Query: 123 R--KRKAEE 130
           +  ++K +E
Sbjct: 88  QAEEKKLDE 96

[Close]

BLAST of CmaCh06G001740 vs. NCBI nr
Match: gi|802760886|ref|XP_012089591.1| (PREDICTED: coiled-coil domain-containing protein 94 homolog [Jatropha curcas])

HSP 1 Score: 104.0 bits (258), Expect = 2.9e-19
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++   TKFNSRKE V GETY+GI++FRFYFKCT CSAEL +KTDP+NSDY+VES  T NF
Sbjct: 49  YIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNF 108

Query: 118 EPC---------ENRKRKAEE 130
           EP          E RKR AEE
Sbjct: 109 EPWRAEDEEADKEQRKRDAEE 129

[Close]

BLAST of CmaCh06G001740 vs. NCBI nr
Match: gi|1009142608|ref|XP_015888814.1| (PREDICTED: coiled-coil domain-containing protein 94 homolog [Ziziphus jujuba])

HSP 1 Score: 104.0 bits (258), Expect = 2.9e-19
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 58  FLVPATKFNSRKEIVFGETYIGIRMFRFYFKCTGCSAELIIKTDPRNSDYIVESRVTSNF 117
           ++   TKFNSRKE V GETY+GI++FRFYFKCT CSAEL +KTDP+NSDY+VES  T NF
Sbjct: 49  YIYKGTKFNSRKEDVIGETYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYVVESGATRNF 108

Query: 118 EPC---------ENRKRKAEE 130
           EP          E RKR AEE
Sbjct: 109 EPWREEDELVDNEKRKRDAEE 129

The following BLAST results are available for this feature:

BLAST of CmaCh06G001740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCD94_DICDI	2.8e-14	45.56	Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=...	[more]
CCD94_HUMAN	1.5e-12	50.82	Coiled-coil domain-containing protein 94 OS=Homo sapiens GN=CCDC94 PE=1 SV=1	[more]
CCD94_MOUSE	1.5e-12	50.82	Coiled-coil domain-containing protein 94 OS=Mus musculus GN=Ccdc94 PE=1 SV=1	[more]
CWF16_SCHPO	5.4e-10	43.84	Pre-mRNA-splicing factor cwf16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of CmaCh06G001740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0J8CV91_BETVU	9.0e-20	69.57	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g036060 PE=4 S...	[more]
A0A0K9R2D6_SPIOL	9.0e-20	63.89	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114600 PE=4 SV=1	[more]
W9QZD4_9ROSA	2.0e-19	53.33	Uncharacterized protein OS=Morus notabilis GN=L484_014905 PE=4 SV=1	[more]
A0A067JTY6_JATCU	2.0e-19	62.96	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01693 PE=4 SV=1	[more]
A0A0A0KL62_CUCSA	2.6e-19	62.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003615 PE=4 SV=1	[more]

BLAST of CmaCh06G001740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17130.2	4.0e-19	54.55	Family of unknown function (DUF572)	[more]
AT2G32050.1	7.7e-15	48.53	Family of unknown function (DUF572)	[more]
AT3G43250.1	2.9e-14	42.42	Family of unknown function (DUF572)	[more]
AT2G29430.1	1.4e-11	55.77	Family of unknown function (DUF572)	[more]

BLAST of CmaCh06G001740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|719971482\|ref\|XP_010274808.1\|	4.4e-20	65.43	PREDICTED: coiled-coil domain-containing protein 94 homolog [Nelumbo nucifera]	[more]
gi\|902198437\|gb\|KNA13668.1\|	1.3e-19	63.89	hypothetical protein SOVF_114600 [Spinacia oleracea]	[more]
gi\|731318270\|ref\|XP_010669630.1\|	1.3e-19	69.57	PREDICTED: coiled-coil domain-containing protein 94 homolog [Beta vulgaris subsp...	[more]
gi\|802760886\|ref\|XP_012089591.1\|	2.9e-19	62.96	PREDICTED: coiled-coil domain-containing protein 94 homolog [Jatropha curcas]	[more]
gi\|1009142608\|ref\|XP_015888814.1\|	2.9e-19	62.96	PREDICTED: coiled-coil domain-containing protein 94 homolog [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007590	CWC16

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G001740.1	CmaCh06G001740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007590	CWC16 protein	PANTHER	PTHR12111	CELL CYCLE CONTROL PROTEIN CWF16-RELATED	coord: 63..119 score: 8.3
IPR007590	CWC16 protein	PFAM	PF04502	DUF572	coord: 63..126 score: 4.6
None	No IPR available	PANTHER	PTHR12111:SF1	COILED-COIL DOMAIN-CONTAINING PROTEIN 94	coord: 63..119 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G001740	CmoCh16G013460	Cucurbita moschata (Rifu)	cmacmoB805
CmaCh06G001740	Cp4.1LG14g10700	Cucurbita pepo (Zucchini)	cmacpeB815
CmaCh06G001740	Carg19423	Silver-seed gourd	carcmaB0598

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G001740	CmaCh16G012940	Cucurbita maxima (Rimu)	cmacmaB355

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G001740	Cucumber (Chinese Long) v3	cmacucB0977
CmaCh06G001740	Cucumber (Chinese Long) v3	cmacucB0988
CmaCh06G001740	Watermelon (97103) v2	cmawmbB846
CmaCh06G001740	Watermelon (97103) v2	cmawmbB855
CmaCh06G001740	Wax gourd	cmawgoB0983
CmaCh06G001740	Wax gourd	cmawgoB1036
CmaCh06G001740	Cucurbita maxima (Rimu)	cmacmaB520
CmaCh06G001740	Cucumber (Gy14) v1	cgycmaB0898
CmaCh06G001740	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G001740	Wild cucumber (PI 183967)	cmacpiB840
CmaCh06G001740	Cucumber (Chinese Long) v2	cmacuB827
CmaCh06G001740	Cucumber (Chinese Long) v2	cmacuB836
CmaCh06G001740	Melon (DHL92) v3.5.1	cmameB765
CmaCh06G001740	Watermelon (Charleston Gray)	cmawcgB728
CmaCh06G001740	Watermelon (Charleston Gray)	cmawcgB736
CmaCh06G001740	Watermelon (97103) v1	cmawmB782
CmaCh06G001740	Watermelon (97103) v1	cmawmB806
CmaCh06G001740	Cucurbita pepo (Zucchini)	cmacpeB809
CmaCh06G001740	Cucurbita pepo (Zucchini)	cmacpeB852
CmaCh06G001740	Bottle gourd (USVL1VR-Ls)	cmalsiB748
CmaCh06G001740	Bottle gourd (USVL1VR-Ls)	cmalsiB776
CmaCh06G001740	Cucumber (Gy14) v2	cgybcmaB440
CmaCh06G001740	Cucumber (Gy14) v2	cgybcmaB561
CmaCh06G001740	Melon (DHL92) v3.6.1	cmamedB870
CmaCh06G001740	Silver-seed gourd	carcmaB0216