CmaCh06G001140 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G001140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCma_Chr06 : 599513 .. 600588 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCTCTTTTCTTACATTCTTCTCTTGGTCCACCACTTGCTTGCAAGCCCCTGCCATGTCCTCTTAAGAGGCCTATACATATGCGTGCACTACTTGGCTTTCGTTGCAGTACTAGGATATTTTCTCGTTCGGAATTATCTCCTGTCAAATTATGTCCATCCTTACATATTAGCAGATCAATCACCTGTTCTTCAACTCCTTCAAATGAGGGTGTGGTATCAGTGATCAATTTTGAAGATTTAGTTGAGAAGGACTTTTCGTTTCTCGATTCAGACGATTTTGGTTCTATAGAAGAGCATGATGAAAAGATTAGGCGCATCATTTCTGCTGGAGAAATTGCAGAAAGTTCTCAGGTTATGGTTGCCATTTCTTCAGAAGGATTTGTTGATCGGTTGTACGACTCAGCTCCTTGCCGAAGTTTACTTGTTGTCCATGATGCTATTCTACCATTAGCTTGTATTAAAGAAAAATATGACAAAGTTAAGTGCTGGCAAGGAGAAGTTATATATGTGCCAGAAAAATGGGGACCTTTTGACGTTGTATTTCTCTATTATCTGCCAGCAATGCCTTTTGAACTCGACGCAATCTTTGGCGCACTCACACAACGTTGTTTGCCAGGTGATTTTTTTTTCTTTTTTTGCATAGTTTCTTACCATCTTTGTTCGATCTCCAGATTATAAGTTATGGATTTGAGCAATTGGTTTTTTCCTTGCCTCCAAGATATATCATTAGTCCTTGGGGCAATGTTGAGATATATTGTGACATAATCTGTTAGTTCCTTTAGAAAATAAAACCACATGGAAATGAAATCTTGCTTGTTTTATAGATTCTATTACAGCCCTAAGGTAATCTATTTCCTTCTTGCTCAATAGGGGGAAGACTAGTTATTAGTCATCCCGGTGGAAGGAAAGCGTTACAGCAAGAACAGCAACAGTTCTCAGATGTCGTAGTTTCGGATTTACCTGATAGGACTACTTTGCAGAAAGTTGCTGCTGATCACTCTTTTGGCCTGACTGAATTTGTAGATGAGGATGGCTTTTATCTTGCAGTTTTGAAGTTCAACAAGGATTGA

mRNA sequence

ATGAATTCTCTTTTCTTACATTCTTCTCTTGGTCCACCACTTGCTTGCAAGCCCCTGCCATGTCCTCTTAAGAGGCCTATACATATGCGTGCACTACTTGGCTTTCGTTGCAGTACTAGGATATTTTCTCGTTCGGAATTATCTCCTGTCAAATTATGTCCATCCTTACATATTAGCAGATCAATCACCTGTTCTTCAACTCCTTCAAATGAGGGTGTGGTATCAGTGATCAATTTTGAAGATTTAGTTGAGAAGGACTTTTCGTTTCTCGATTCAGACGATTTTGGTTCTATAGAAGAGCATGATGAAAAGATTAGGCGCATCATTTCTGCTGGAGAAATTGCAGAAAGTTCTCAGGTTATGGTTGCCATTTCTTCAGAAGGATTTGTTGATCGGTTGTACGACTCAGCTCCTTGCCGAAGTTTACTTGTTGTCCATGATGCTATTCTACCATTAGCTTGTATTAAAGAAAAATATGACAAAGTTAAGTGCTGGCAAGGAGAAGTTATATATGTGCCAGAAAAATGGGGACCTTTTGACGTTGTATTTCTCTATTATCTGCCAGCAATGCCTTTTGAACTCGACGCAATCTTTGGCGCACTCACACAACGTTGTTTGCCAGGGGGAAGACTAGTTATTAGTCATCCCGGTGGAAGGAAAGCGTTACAGCAAGAACAGCAACAGTTCTCAGATGTCGTAGTTTCGGATTTACCTGATAGGACTACTTTGCAGAAAGTTGCTGCTGATCACTCTTTTGGCCTGACTGAATTTGTAGATGAGGATGGCTTTTATCTTGCAGTTTTGAAGTTCAACAAGGATTGA

Coding sequence (CDS)

ATGAATTCTCTTTTCTTACATTCTTCTCTTGGTCCACCACTTGCTTGCAAGCCCCTGCCATGTCCTCTTAAGAGGCCTATACATATGCGTGCACTACTTGGCTTTCGTTGCAGTACTAGGATATTTTCTCGTTCGGAATTATCTCCTGTCAAATTATGTCCATCCTTACATATTAGCAGATCAATCACCTGTTCTTCAACTCCTTCAAATGAGGGTGTGGTATCAGTGATCAATTTTGAAGATTTAGTTGAGAAGGACTTTTCGTTTCTCGATTCAGACGATTTTGGTTCTATAGAAGAGCATGATGAAAAGATTAGGCGCATCATTTCTGCTGGAGAAATTGCAGAAAGTTCTCAGGTTATGGTTGCCATTTCTTCAGAAGGATTTGTTGATCGGTTGTACGACTCAGCTCCTTGCCGAAGTTTACTTGTTGTCCATGATGCTATTCTACCATTAGCTTGTATTAAAGAAAAATATGACAAAGTTAAGTGCTGGCAAGGAGAAGTTATATATGTGCCAGAAAAATGGGGACCTTTTGACGTTGTATTTCTCTATTATCTGCCAGCAATGCCTTTTGAACTCGACGCAATCTTTGGCGCACTCACACAACGTTGTTTGCCAGGGGGAAGACTAGTTATTAGTCATCCCGGTGGAAGGAAAGCGTTACAGCAAGAACAGCAACAGTTCTCAGATGTCGTAGTTTCGGATTTACCTGATAGGACTACTTTGCAGAAAGTTGCTGCTGATCACTCTTTTGGCCTGACTGAATTTGTAGATGAGGATGGCTTTTATCTTGCAGTTTTGAAGTTCAACAAGGATTGA

Protein sequence

MNSLFLHSSLGPPLACKPLPCPLKRPIHMRALLGFRCSTRIFSRSELSPVKLCPSLHISRSITCSSTPSNEGVVSVINFEDLVEKDFSFLDSDDFGSIEEHDEKIRRIISAGEIAESSQVMVAISSEGFVDRLYDSAPCRSLLVVHDAILPLACIKEKYDKVKCWQGEVIYVPEKWGPFDVVFLYYLPAMPFELDAIFGALTQRCLPGGRLVISHPGGRKALQQEQQQFSDVVVSDLPDRTTLQKVAADHSFGLTEFVDEDGFYLAVLKFNKD
Homology
[Close]
BLAST of CmaCh06G001140 vs. TrEMBL
Match: A0A0A0LF01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G800650 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 3.4e-108
Identity = 200/250 (80.00%), Postives = 218/250 (87.20%), Query Frame = 1 

Query: 24  KRPIHMRALLGFRCSTRIFSRSELSPVKLCPSLHISRSITCSSTPSNEGVVSVINFEDLV 83
           +RPI + AL G   +TRIF+     P+   P+LHIS SI CSSTPSNEGVVSV+NFEDLV
Sbjct: 84  RRPIRICALRGSHHNTRIFA-----PLISFPALHISNSIACSSTPSNEGVVSVVNFEDLV 143

Query: 84  EKDFSFLDSDDFGSIEEHDEKIRRIISAGEIAESSQVMVAISSEGFVDRLYDSAPCRSLL 143
           EKDFSFLDSDDF SIEEH +KIRRIISAGEI ESSQVMV+ISSEGFVD+L+  AP RSLL
Sbjct: 144 EKDFSFLDSDDFSSIEEHGQKIRRIISAGEIVESSQVMVSISSEGFVDQLFQLAPSRSLL 203

Query: 144 VVHDAILPLACIKEKYDKVKCWQGEVIYVPEKWGPFDVVFLYYLPAMPFELDAIFGALTQ 203
           VVHD+IL LACIKEKYDKVKCWQGEVIYVPEKWGPFD VFLYYLPAMPFELDAIFGAL++
Sbjct: 204 VVHDSILTLACIKEKYDKVKCWQGEVIYVPEKWGPFDAVFLYYLPAMPFELDAIFGALSE 263

Query: 204 RCLPGGRLVISHPGGRKALQQEQQQFSDVVVSDLPDRTTLQKVAADHSFGLTEFVDEDGF 263
           RC+ G RLVISHP GRKAL+QEQQQF DVVVSDLPDR TLQK AADHSF LTEF+DE GF
Sbjct: 264 RCVAGARLVISHPNGRKALEQEQQQFPDVVVSDLPDRMTLQKAAADHSFDLTEFIDEHGF 323

Query: 264 YLAVLKFNKD 274
           YLA+LKFNKD
Sbjct: 324 YLAILKFNKD 328

[Close]
BLAST of CmaCh06G001140 vs. TrEMBL
Match: B9HA06_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s20910g PE=4 SV=2)

HSP 1 Score: 298.5 bits (763), Expect = 8.2e-78
Identity = 149/275 (54.18%), Postives = 200/275 (72.73%), Query Frame = 1 

Query: 1   MNSLFLHSSLGPPLACKPLP----CPLKRPIHMRALLGFRCSTRIFSRSELSPVKLCPSL 60
           MNS+ L SS   P+   P P    C   +P+++    G RC+++  S           S 
Sbjct: 1   MNSILLPSS---PVLQLPFPQFSLCRQLQPLYISKSRGNRCASQNSSLPHSFQPNSKFSF 60

Query: 61  HISRSITCSSTPSNEGVVSVINFEDLVEKDFSFLDSDDFGSIEEHDEKIRRIISAGEIAE 120
           H  + +  ++ PS+EG VSVINFED +EKD+SFLDS++  S +EHD+ I RIISAG I E
Sbjct: 61  HSHQPLIAAAVPSDEGPVSVINFEDFIEKDWSFLDSEESNS-KEHDQNIGRIISAGRIEE 120

Query: 121 SSQVMVAISSEGFVDRLYDSAPCRSLLVVHDAILPLACIKEKYDKVKCWQGEVIYVPEKW 180
           +S+V+V++ SEGFVDRL D++PC  LL+VHD++  LAC+KEKYDKVKCWQGE+I+V EKW
Sbjct: 121 TSRVLVSLGSEGFVDRLVDTSPCSLLLIVHDSLFLLACVKEKYDKVKCWQGELIHVSEKW 180

Query: 181 GPFDVVFLYYLPAMPFELDAIFGALTQRCLPGGRLVISHPGGRKALQQEQQQFSDVVVSD 240
            P DVVFLY+LPA+PF+LD + G+L +RC PG RLVISHP GR+ L+Q+++Q+ DVV SD
Sbjct: 181 APLDVVFLYFLPALPFKLDEVLGSLAKRCSPGARLVISHPQGREVLEQQKKQYQDVVTSD 240

Query: 241 LPDRTTLQKVAADHSFGLTEFVDEDGFYLAVLKFN 272
           LPD+ TLQK AA+HSF + E+VDE GFYL VL+ +
Sbjct: 241 LPDKMTLQKAAANHSFEMVEYVDEPGFYLTVLRLS 271

[Close]
BLAST of CmaCh06G001140 vs. TrEMBL
Match: M5VQP4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009807mg PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 7.0e-77
Identity = 159/279 (56.99%), Postives = 201/279 (72.04%), Query Frame = 1 

Query: 1   MNSLFLHSSLGPPLAC-KPLPCPLKRPIHMRALLGFRCSTRIFSRSE-LSPVKLC----- 60
           MNS+F   SL  PLA  + LPC   +P        +    R+  R+  +SP+ L      
Sbjct: 1   MNSVFSSQSLCIPLASFQLLPCLQTQP-------HYTFPNRVCYRNRCISPLSLSFPFIS 60

Query: 61  -PSLHISRSITCSSTPSNEGVVSVINFEDLVEKDFSFLDSDDFGSIEEHDEKIRRIISAG 120
             +LH  +S   ++ P +EGVVSVINF+D  EKD+SFLDS DF S  +++  I RII+AG
Sbjct: 61  HQALHARQSFCGATAPPDEGVVSVINFDDFAEKDWSFLDSADFSSGPDYNLNIDRIITAG 120

Query: 121 EIAESSQVMVAISSEGFVDRLYDSAPCRSLLVVHDAILPLACIKEKYDKVKCWQGEVIYV 180
           EI E+S+VMV+I SEGFVDR+ +S+PC  LLVVHD++  LA IKEKYDKVKCWQGE+IYV
Sbjct: 121 EIEETSRVMVSIGSEGFVDRVVESSPCNLLLVVHDSLFVLAGIKEKYDKVKCWQGELIYV 180

Query: 181 PEKWGPFDVVFLYYLPAMPFELDAIFGALTQRCLPGGRLVISHPGGRKALQQEQQQFSDV 240
           P+KW P DVVFLY+LPAMPF LD  FGAL +  L G RLVISHP GR+ L+Q++QQ+ DV
Sbjct: 181 PDKWAPLDVVFLYFLPAMPFTLDEAFGALARCFLAGARLVISHPQGREVLEQQRQQYPDV 240

Query: 241 VVSDLPDRTTLQKVAADHSFGLTEFVDEDGFYLAVLKFN 272
           V SDLP++ TLQ+VAA HSF LT++VDE GFYLAVLKF+
Sbjct: 241 VTSDLPEKKTLQEVAAQHSFELTDYVDEPGFYLAVLKFS 272

[Close]
BLAST of CmaCh06G001140 vs. TrEMBL
Match: F6HLH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06780 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 5.0e-75
Identity = 154/272 (56.62%), Postives = 191/272 (70.22%), Query Frame = 1 

Query: 1   MNSLFLHSSLGPPLACKPLPCPLKRPIHMRALLGFRCSTRIFSRSELSPVKLCPSLHISR 60
           MN+LF  SS  P LA      P   P+       +      + R       L  S  I R
Sbjct: 1   MNALFFSSS--PLLATPSRKAPPFIPLRHHCYSHYSS----YHRGNYPSFPLLSS-SIHR 60

Query: 61  SITCSSTPSNEGVVSVINFEDLVEKDFSFLDSDDFGSIEEHDEKIRRIISAGEIAESSQV 120
               ++TPSNE  VSVI+FED +EKD+SFLDSD   S EEH +K   IIS G I E+S+V
Sbjct: 61  LTVGAATPSNEEAVSVIDFEDFMEKDWSFLDSDGTNSEEEHKQKTDWIISKGNIGENSRV 120

Query: 121 MVAISSEGFVDRLYDSAPCRSLLVVHDAILPLACIKEKYDKVKCWQGEVIYVPEKWGPFD 180
           +V+  +E FVD+L DS+PC+ LLVVHD++  LA IKEKYDKVKCWQGE+IYVPEKW PFD
Sbjct: 121 LVSTGAEEFVDQLVDSSPCQLLLVVHDSLFVLAGIKEKYDKVKCWQGELIYVPEKWTPFD 180

Query: 181 VVFLYYLPAMPFELDAIFGALTQRCLPGGRLVISHPGGRKALQQEQQQFSDVVVSDLPDR 240
           VVFLY+LPA+PFELD IFG L +RCLPG R+VISH  GR+ L+Q+++Q+ DV++SDLPD+
Sbjct: 181 VVFLYFLPALPFELDRIFGELAKRCLPGARVVISHLQGREVLEQQRRQYPDVIISDLPDK 240

Query: 241 TTLQKVAADHSFGLTEFVDEDGFYLAVLKFNK 273
            TLQKVAADHSF +TEFV+E  FYLAVL F +
Sbjct: 241 MTLQKVAADHSFEMTEFVEEPSFYLAVLNFRE 265

[Close]
BLAST of CmaCh06G001140 vs. TrEMBL
Match: V4T115_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012299mg PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.2e-74
Identity = 161/279 (57.71%), Postives = 197/279 (70.61%), Query Frame = 1 

Query: 1   MNSLFLHSSLGPPLACKPLPCPLKRPIHMRALLGFRCSTRIFSRSELSPV---KLCPSLH 60
           MNSLFL SSL    +CK  P P  RP        + C+          P     L PSL 
Sbjct: 32  MNSLFLPSSLLLFPSCKS-PSPYLRPKPQ-----YICTFNRHHHDHDLPTLSHSLKPSLQ 91

Query: 61  ISRSITCSS----TPSNEGVVSVINFEDLVEKDFSFLDSDDFGSIEEHDEKIRRIISAGE 120
           +S S    S    +P +EG VSVINFED  EKD+SFLDSD+  + +EH ++I +IISAGE
Sbjct: 92  LSLSTRKMSIGAASPPDEGTVSVINFEDFTEKDWSFLDSDEL-NFKEHIQRIDQIISAGE 151

Query: 121 IAESSQVMVAISSEGFVDRLYDSAPCRSLLVVHDAILPLACIKEKYDKVKCWQGEVIYVP 180
           I ESS+V+V+ISSE FVDR+ +S+P   LLVVHD++  LA IKEKYD VKCWQGE+IYVP
Sbjct: 152 IDESSKVLVSISSEEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP 211

Query: 181 EKWGPFDVVFLYYLPAMPFELDAIFGALTQRCLPGGRLVISHPGGRKALQQEQQQFSDVV 240
           +KWGP DVVFLY+LPAMPF LD +F  L  RC PG R+VISHP GR+ALQ++++QF DV+
Sbjct: 212 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVI 271

Query: 241 VSDLPDRTTLQKVAADHSFGLTEFVDEDGFYLAVLKFNK 273
           VSDLPD+ TLQKVAA+H F +  FVDE GFYL VLKF+K
Sbjct: 272 VSDLPDQMTLQKVAANHCFQIDNFVDESGFYLVVLKFSK 302

[Close]
BLAST of CmaCh06G001140 vs. TAIR10
Match: AT2G41950.1 (AT2G41950.1 unknown protein)

HSP 1 Score: 269.2 bits (687), Expect = 2.7e-72
Identity = 139/237 (58.65%), Postives = 178/237 (75.11%), Query Frame = 1 

Query: 36  RCSTRIFSRSELSPVKLCPSLHISRSITCSSTPSNEGVVSVINFEDLVEKDFSFLDSDDF 95
           R  + +FS   LS  +   S + +  ++ SS P  EG VSV++F    EKD+SFL+S + 
Sbjct: 35  RLQSHLFSPQHLSFSQSNVSRYRAFCVSSSSPP--EGTVSVVDFH---EKDWSFLESMEI 94

Query: 96  GSIEEHDEKIRRIISAGEIAESSQVMVAISSEGFVDRLYDSAPCRSLLVVHDAILPLACI 155
            S E H +KI RII AGE++ESS+V+V+ISSE FVDRL +S+P + LL+VHD++  LACI
Sbjct: 95  DSTE-HTQKIERIIKAGELSESSRVLVSISSETFVDRLVESSPSQLLLIVHDSLFTLACI 154

Query: 156 KEKYDKVKCWQGEVIYVPEKWGPFDVVFLYYLPAMPFELDAIFGALTQRCLPGGRLVISH 215
           KEKYDKVKCWQGE+IYVPEKW P D VFLY+LPA+PF+LD +F  L+QRC  G R+VISH
Sbjct: 155 KEKYDKVKCWQGEMIYVPEKWSPLDAVFLYFLPALPFDLDELFKTLSQRCSSGARVVISH 214

Query: 216 PGGRKALQQEQQQFSDVVVSDLPDRTTLQKVAADHSFGLTEFVDEDGFYLAVLKFNK 273
           P GR  L+Q++++FSDVVVSDLPD +TL  VA  HSF LT+FVDE G YLAVLK +K
Sbjct: 215 PQGRLGLEQQRKEFSDVVVSDLPDESTLSNVAEKHSFELTQFVDEQGLYLAVLKSSK 265

[Close]
BLAST of CmaCh06G001140 vs. NCBI nr
Match: gi|449437559|ref|XP_004136559.1| (PREDICTED: uncharacterized protein LOC101219545 [Cucumis sativus])

HSP 1 Score: 429.9 bits (1104), Expect = 3.4e-117
Identity = 216/273 (79.12%), Postives = 235/273 (86.08%), Query Frame = 1 

Query: 1   MNSLFLHSSLGPPLACKPLPCPLKRPIHMRALLGFRCSTRIFSRSELSPVKLCPSLHISR 60
           MNSLFLHSSL P + CKP   PL+RPI + AL G   +TRIF+     P+   P+LHIS 
Sbjct: 1   MNSLFLHSSLVPSVTCKPRSFPLRRPIRICALRGSHHNTRIFA-----PLISFPALHISN 60

Query: 61  SITCSSTPSNEGVVSVINFEDLVEKDFSFLDSDDFGSIEEHDEKIRRIISAGEIAESSQV 120
           SI CSSTPSNEGVVSV+NFEDLVEKDFSFLDSDDF SIEEH +KIRRIISAGEI ESSQV
Sbjct: 61  SIACSSTPSNEGVVSVVNFEDLVEKDFSFLDSDDFSSIEEHGQKIRRIISAGEIVESSQV 120

Query: 121 MVAISSEGFVDRLYDSAPCRSLLVVHDAILPLACIKEKYDKVKCWQGEVIYVPEKWGPFD 180
           MV+ISSEGFVD+L+  AP RSLLVVHD+IL LACIKEKYDKVKCWQGEVIYVPEKWGPFD
Sbjct: 121 MVSISSEGFVDQLFQLAPSRSLLVVHDSILTLACIKEKYDKVKCWQGEVIYVPEKWGPFD 180

Query: 181 VVFLYYLPAMPFELDAIFGALTQRCLPGGRLVISHPGGRKALQQEQQQFSDVVVSDLPDR 240
            VFLYYLPAMPFELDAIFGAL++RC+ G RLVISHP GRKAL+QEQQQF DVVVSDLPDR
Sbjct: 181 AVFLYYLPAMPFELDAIFGALSERCVAGARLVISHPNGRKALEQEQQQFPDVVVSDLPDR 240

Query: 241 TTLQKVAADHSFGLTEFVDEDGFYLAVLKFNKD 274
            TLQK AADHSF LTEF+DE GFYLA+LKFNKD
Sbjct: 241 MTLQKAAADHSFDLTEFIDEHGFYLAILKFNKD 268

[Close]
BLAST of CmaCh06G001140 vs. NCBI nr
Match: gi|659084706|ref|XP_008443028.1| (PREDICTED: uncharacterized protein LOC103486747 [Cucumis melo])

HSP 1 Score: 418.7 bits (1075), Expect = 7.8e-114
Identity = 214/275 (77.82%), Postives = 231/275 (84.00%), Query Frame = 1 

Query: 1   MNSLFLHSSLGPPLACKPLPCPLKR--PIHMRALLGFRCSTRIFSRSELSPVKLCPSLHI 60
           MNSLFLHSSL P L C P   PLKR  PIHM A  G   +TRIF+     P    P+LHI
Sbjct: 1   MNSLFLHSSLVPSLTCNPRSFPLKRLRPIHMCAPRGSHHNTRIFA-----PSISFPALHI 60

Query: 61  SRSITCSSTPSNEGVVSVINFEDLVEKDFSFLDSDDFGSIEEHDEKIRRIISAGEIAESS 120
           S S   SSTPSNEGVVSV+NFEDLVEKDFSFLDSDDF S+EEHD KIRRIISAGEI ESS
Sbjct: 61  SNSAARSSTPSNEGVVSVVNFEDLVEKDFSFLDSDDFSSVEEHDRKIRRIISAGEIVESS 120

Query: 121 QVMVAISSEGFVDRLYDSAPCRSLLVVHDAILPLACIKEKYDKVKCWQGEVIYVPEKWGP 180
           QVMV+ISSEGFVD+L+  AP RSLLVVHD+IL LACIKEKYDKVKCWQGE+IYVPEKWGP
Sbjct: 121 QVMVSISSEGFVDQLFQLAPSRSLLVVHDSILTLACIKEKYDKVKCWQGEIIYVPEKWGP 180

Query: 181 FDVVFLYYLPAMPFELDAIFGALTQRCLPGGRLVISHPGGRKALQQEQQQFSDVVVSDLP 240
           FD VFLYYLPAMPFELDAIFGAL++RC+ G RLVISHP GRKAL+QE+QQF DVVVSDLP
Sbjct: 181 FDAVFLYYLPAMPFELDAIFGALSERCVAGARLVISHPDGRKALEQERQQFPDVVVSDLP 240

Query: 241 DRTTLQKVAADHSFGLTEFVDEDGFYLAVLKFNKD 274
           DR TLQK AADHSF LTEF+DE GFYLA+LKFNKD
Sbjct: 241 DRMTLQKAAADHSFDLTEFIDEHGFYLAILKFNKD 270

[Close]
BLAST of CmaCh06G001140 vs. NCBI nr
Match: gi|700204149|gb|KGN59282.1| (hypothetical protein Csa_3G800650 [Cucumis sativus])

HSP 1 Score: 399.4 bits (1025), Expect = 4.9e-108
Identity = 200/250 (80.00%), Postives = 218/250 (87.20%), Query Frame = 1 

Query: 24  KRPIHMRALLGFRCSTRIFSRSELSPVKLCPSLHISRSITCSSTPSNEGVVSVINFEDLV 83
           +RPI + AL G   +TRIF+     P+   P+LHIS SI CSSTPSNEGVVSV+NFEDLV
Sbjct: 84  RRPIRICALRGSHHNTRIFA-----PLISFPALHISNSIACSSTPSNEGVVSVVNFEDLV 143

Query: 84  EKDFSFLDSDDFGSIEEHDEKIRRIISAGEIAESSQVMVAISSEGFVDRLYDSAPCRSLL 143
           EKDFSFLDSDDF SIEEH +KIRRIISAGEI ESSQVMV+ISSEGFVD+L+  AP RSLL
Sbjct: 144 EKDFSFLDSDDFSSIEEHGQKIRRIISAGEIVESSQVMVSISSEGFVDQLFQLAPSRSLL 203

Query: 144 VVHDAILPLACIKEKYDKVKCWQGEVIYVPEKWGPFDVVFLYYLPAMPFELDAIFGALTQ 203
           VVHD+IL LACIKEKYDKVKCWQGEVIYVPEKWGPFD VFLYYLPAMPFELDAIFGAL++
Sbjct: 204 VVHDSILTLACIKEKYDKVKCWQGEVIYVPEKWGPFDAVFLYYLPAMPFELDAIFGALSE 263

Query: 204 RCLPGGRLVISHPGGRKALQQEQQQFSDVVVSDLPDRTTLQKVAADHSFGLTEFVDEDGF 263
           RC+ G RLVISHP GRKAL+QEQQQF DVVVSDLPDR TLQK AADHSF LTEF+DE GF
Sbjct: 264 RCVAGARLVISHPNGRKALEQEQQQFPDVVVSDLPDRMTLQKAAADHSFDLTEFIDEHGF 323

Query: 264 YLAVLKFNKD 274
           YLA+LKFNKD
Sbjct: 324 YLAILKFNKD 328

[Close]
BLAST of CmaCh06G001140 vs. NCBI nr
Match: gi|566177343|ref|XP_002308356.2| (hypothetical protein POPTR_0006s20910g [Populus trichocarpa])

HSP 1 Score: 298.5 bits (763), Expect = 1.2e-77
Identity = 149/275 (54.18%), Postives = 200/275 (72.73%), Query Frame = 1 

Query: 1   MNSLFLHSSLGPPLACKPLP----CPLKRPIHMRALLGFRCSTRIFSRSELSPVKLCPSL 60
           MNS+ L SS   P+   P P    C   +P+++    G RC+++  S           S 
Sbjct: 1   MNSILLPSS---PVLQLPFPQFSLCRQLQPLYISKSRGNRCASQNSSLPHSFQPNSKFSF 60

Query: 61  HISRSITCSSTPSNEGVVSVINFEDLVEKDFSFLDSDDFGSIEEHDEKIRRIISAGEIAE 120
           H  + +  ++ PS+EG VSVINFED +EKD+SFLDS++  S +EHD+ I RIISAG I E
Sbjct: 61  HSHQPLIAAAVPSDEGPVSVINFEDFIEKDWSFLDSEESNS-KEHDQNIGRIISAGRIEE 120

Query: 121 SSQVMVAISSEGFVDRLYDSAPCRSLLVVHDAILPLACIKEKYDKVKCWQGEVIYVPEKW 180
           +S+V+V++ SEGFVDRL D++PC  LL+VHD++  LAC+KEKYDKVKCWQGE+I+V EKW
Sbjct: 121 TSRVLVSLGSEGFVDRLVDTSPCSLLLIVHDSLFLLACVKEKYDKVKCWQGELIHVSEKW 180

Query: 181 GPFDVVFLYYLPAMPFELDAIFGALTQRCLPGGRLVISHPGGRKALQQEQQQFSDVVVSD 240
            P DVVFLY+LPA+PF+LD + G+L +RC PG RLVISHP GR+ L+Q+++Q+ DVV SD
Sbjct: 181 APLDVVFLYFLPALPFKLDEVLGSLAKRCSPGARLVISHPQGREVLEQQKKQYQDVVTSD 240

Query: 241 LPDRTTLQKVAADHSFGLTEFVDEDGFYLAVLKFN 272
           LPD+ TLQK AA+HSF + E+VDE GFYL VL+ +
Sbjct: 241 LPDKMTLQKAAANHSFEMVEYVDEPGFYLTVLRLS 271

[Close]
BLAST of CmaCh06G001140 vs. NCBI nr
Match: gi|1009161489|ref|XP_015898926.1| (PREDICTED: uncharacterized protein LOC107432325 [Ziziphus jujuba])

HSP 1 Score: 297.0 bits (759), Expect = 3.4e-77
Identity = 160/277 (57.76%), Postives = 203/277 (73.29%), Query Frame = 1 

Query: 1   MNSLFLHSSLGPPLAC-KPLPCPLKRPIHMRALLGFRCSTRIFSRSEL-SPVKLC---PS 60
           M SLFL SS    L+  +  P  L  PI  + +    CS R     +L SP  L     S
Sbjct: 1   MKSLFLPSSFLLSLSTIRQFPPYL--PIQSQHI----CSDRHHKHHQLHSPFSLTFPLNS 60

Query: 61  LHISRSITCSSTPSNEGVVSVINFEDLVEKDFSFLDSDDFGSIEEHDEKIRRIISAGEIA 120
           LH  +S   ++ PS EG VSVINFED+VEKD+SFLDSDD  S +++++K+ RII++G I 
Sbjct: 61  LHAQKSSISATIPSKEGAVSVINFEDVVEKDWSFLDSDDITSNQDYNQKLDRIIASGGIQ 120

Query: 121 ESSQVMVAISSEGFVDRLYDSAPCRSLLVVHDAILPLACIKEKYDKVKCWQGEVIYVPEK 180
           ESS+VMV++ SE FVD++ +S+PC  LLVVHD++L LACIKEKYDKVKCWQGE+IYVPEK
Sbjct: 121 ESSRVMVSLGSEVFVDKVVESSPCNLLLVVHDSLLVLACIKEKYDKVKCWQGELIYVPEK 180

Query: 181 WGPFDVVFLYYLPAMPFELDAIFGALTQRCLPGGRLVISHPGGRKALQQEQQQFSDVVVS 240
           W P DVVFLY+LPA+PFEL+ +F AL + C PG RLVISHP GR+ L+++QQQ+ DVVVS
Sbjct: 181 WAPLDVVFLYFLPALPFELNQVFEALAKLCSPGARLVISHPQGREVLEKQQQQYQDVVVS 240

Query: 241 DLPDRTTLQKVAADHSFGLTEFVDEDGFYLAVLKFNK 273
           +LP++ TL+KVAA H F L EFVD+ GFYLAVLK  K
Sbjct: 241 ELPEKLTLEKVAAQHYFELVEFVDDPGFYLAVLKMCK 271

The following BLAST results are available for this feature:
BLAST of CmaCh06G001140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh06G001140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF01_CUCSA3.4e-10880.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G800650 PE=4 SV=1[more]
B9HA06_POPTR8.2e-7854.18Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s20910g PE=4 SV=2[more]
M5VQP4_PRUPE7.0e-7756.99Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009807mg PE=4 SV=1[more]
F6HLH2_VITVI5.0e-7556.62Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06780 PE=4 SV=... [more]
V4T115_9ROSI3.2e-7457.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012299mg PE=4 SV=1[more]
BLAST of CmaCh06G001140 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41950.12.7e-7258.65 unknown protein[more]
BLAST of CmaCh06G001140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449437559|ref|XP_004136559.1|3.4e-11779.12PREDICTED: uncharacterized protein LOC101219545 [Cucumis sativus][more]
gi|659084706|ref|XP_008443028.1|7.8e-11477.82PREDICTED: uncharacterized protein LOC103486747 [Cucumis melo][more]
gi|700204149|gb|KGN59282.1|4.9e-10880.00hypothetical protein Csa_3G800650 [Cucumis sativus][more]
gi|566177343|ref|XP_002308356.2|1.2e-7754.18hypothetical protein POPTR_0006s20910g [Populus trichocarpa][more]
gi|1009161489|ref|XP_015898926.1|3.4e-7757.76PREDICTED: uncharacterized protein LOC107432325 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005730 nucleolus
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0005575 cellular_component
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G001140.1CmaCh06G001140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37217FAMILY NOT NAMEDcoord: 56..273
score: 1.6
NoneNo IPR availablePANTHERPTHR37217:SF1SUBFAMILY NOT NAMEDcoord: 56..273
score: 1.6