CmaCh05G010110 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G010110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ATP binding protein, putative
Location	Cma_Chr05 : 8125429 .. 8127447 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAACTACAGTTTAACTAAGCATACAACAAGGGCTGTTTGAGTCGAAGTGAACTCGCCGCCGAGTCTTTCAACTTCCGGCGTGCAACAGCTAACTCTGCCGGTTTGATCTCAGTTTTAACTGATACTCGTTCACGGAGCGGAACATCAACACATTCTTTCTGCAGCTCCGTTGTACATTTACTTCGGCGCAGGATACAGGGAGAAGACAACGGAGGAATCCAGGAGAATATAATAATTTTTAGGGTTCCGATCGTTTTCCCTTTACTATCATCTTTCCTAGATTTTGCAAATAATTTTTGACATGTATAACCCCGTGGAGGAAAATTGTGATGGTGCTCGCAAGAGAAGTTTCAATGACATGGAGTCCAGTGTTACTTCTGATCAGACCAACTTCGATAAACCCATGGACGAGGGCTTCATTCCTAGAAGGTGTTATGTTTCTTTTTGTTTGATCATTTTCTTTACTTCCCGACGCACAATTCGATACTTAATTTGCGGCTAAAATCTTGGTGTACTGTAGGTATCAAATGGAGGTTTTCGAAGTTGGGATGAAGAGAAACACCATAGCCGTGTTGGAAACAGGTGCTGGAAAGACTATGATTGCAGTGATGCTTATAAAAGAAATTGGAAAAGCTATGAAGTCCAGTGGTGATAAGAAGTTCATCATTTTCTTGGCTCCCACTGTTCATTTGGTTCACCAGGCACGCACTTTCGTAAGGAATGTTCCTACATTTTGATGCTTGTTTTGTATTTTAAAACCTTAGTTTTTGTTTTTGCAGCAATTTAACGTTATTAAAGTTCAGACTGATTTTGAAGTGGCGGAGTATTATGGTGCCATGGGGGTTGATGATTGGAATATGAACTGCTGGGAGAAGGAAACAAGTGAACGCGATGTATGTTTTTACCTATCTTTCTTGGTTGCTTTTGATTTTTGTTCCAATGTGTTACTGTTGCAATTTCTATCACTCCCCTGTTATTTGCTGTTAACCGTTCATGTCCCCTATGCCTTTCCTCGGTTTGAGTTCTTCATATTCATTTGTAATTTATTGTTATTAAGAAAAGGTTGACTGTACTTTTGAATCTTGAGTAAGCCTTAAGGACTGCTGATTCAATTTGATGTTGGAATTATGCATGATTCTTGTTTTCTCTATTTCCATTGCATATTTCCTCCGCTCCCTCGATTGGAATTTGAAGCAGCATTACCTAATGATAAAATTTTGAAGCAAGACAGTCATTTGAAAAGATGAGGACAGTTTGCAGAGCGCAAACTTAAGGTTCTGTTATGTTAATTAACTCGATCATGTCCCCCAAGACCAGTGGCTTAGAGACAAATTTTCGTAGTGTGTCATTGCTTTCAATCTTTCCCAGTTACGGGTGAAGTTCCTATTCTAATTCTGCTGCTTATGATTTGATTAGTTTAGAAAGGGAGACCATCTAGTTGCTATCTCCACCGAATTTAAAACAATACGATTCATACACAATGCTATTGATATATATATTTTTTTAAGGACAATACCGATTTGACCAACTATTTTTGAAATCATATTTTTATATCGATTCACATTTAGCTTGCCTTTTTCAGTCTTTGAGGGAAAACAGACTGAACTGTCAAATTATTTAACTTGCAAATATCTCCGGGCTGACCCTCGCTTCTTGATTTGATTCAGGGTATTCTTTTTGAATAATTTCATTTATAATTGCTGTATAGGTACTCGTTATGACCCCCCAAATTCTTCTTGATGCACTGAGGAAGGCATATTTTAGACTGGGAACAGTGTGCTTGATGATCATGGATGAATGCCATCGTGCTACTGGTAATCACCCTTATACGAAAATCATGAAGGTCAATATCTCATCTGGGAACTTTTTTTCCCCCTGTATTATGTGTTGTGCCTGTATTTTTTCATGCCTTTATTCTTTTTTTCTTTTGGTGAAGGAATTTTATCACAAATCTGACAACAAACCAAAGATTTTTGGAATGACTGCCTCACCTGTTATTAGAAAAGGTACGGTCTAA

mRNA sequence

CCCAACTACAGTTTAACTAAGCATACAACAAGGGCTGTTTGAGTCGAAGTGAACTCGCCGCCGAGTCTTTCAACTTCCGGCGTGCAACAGCTAACTCTGCCGGTTTGATCTCAGTTTTAACTGATACTCGTTCACGGAGCGGAACATCAACACATTCTTTCTGCAGCTCCGTTGTACATTTACTTCGGCGCAGGATACAGGGAGAAGACAACGGAGGAATCCAGGAGAATATAATAATTTTTAGGGTTCCGATCGTTTTCCCTTTACTATCATCTTTCCTAGATTTTGCAAATAATTTTTGACATGTATAACCCCGTGGAGGAAAATTGTGATGGTGCTCGCAAGAGAAGTTTCAATGACATGGAGTCCAGTGTTACTTCTGATCAGACCAACTTCGATAAACCCATGGACGAGGGCTTCATTCCTAGAAGGTATCAAATGGAGGTTTTCGAAGTTGGGATGAAGAGAAACACCATAGCCGTGTTGGAAACAGGTGCTGGAAAGACTATGATTGCAGTGATGCTTATAAAAGAAATTGGAAAAGCTATGAAGTCCAGTGGTGATAAGAAGTTCATCATTTTCTTGGCTCCCACTGTTCATTTGGTTCACCAGGCACGCACTTTCCAATTTAACGTTATTAAAGTTCAGACTGATTTTGAAGTGGCGGAGTATTATGGTGCCATGGGGGTTGATGATTGGAATATGAACTGCTGGGAGAAGGAAACAAGTGAACGCGATGTACTCGTTATGACCCCCCAAATTCTTCTTGATGCACTGAGGAAGGCATATTTTAGACTGGGAACAGTGTGCTTGATGATCATGGATGAATGCCATCGTGCTACTGGTAATCACCCTTATACGAAAATCATGAAGGAATTTTATCACAAATCTGACAACAAACCAAAGATTTTTGGAATGACTGCCTCACCTGTTATTAGAAAAGGTACGGTCTAA

Coding sequence (CDS)

ATGTATAACCCCGTGGAGGAAAATTGTGATGGTGCTCGCAAGAGAAGTTTCAATGACATGGAGTCCAGTGTTACTTCTGATCAGACCAACTTCGATAAACCCATGGACGAGGGCTTCATTCCTAGAAGGTATCAAATGGAGGTTTTCGAAGTTGGGATGAAGAGAAACACCATAGCCGTGTTGGAAACAGGTGCTGGAAAGACTATGATTGCAGTGATGCTTATAAAAGAAATTGGAAAAGCTATGAAGTCCAGTGGTGATAAGAAGTTCATCATTTTCTTGGCTCCCACTGTTCATTTGGTTCACCAGGCACGCACTTTCCAATTTAACGTTATTAAAGTTCAGACTGATTTTGAAGTGGCGGAGTATTATGGTGCCATGGGGGTTGATGATTGGAATATGAACTGCTGGGAGAAGGAAACAAGTGAACGCGATGTACTCGTTATGACCCCCCAAATTCTTCTTGATGCACTGAGGAAGGCATATTTTAGACTGGGAACAGTGTGCTTGATGATCATGGATGAATGCCATCGTGCTACTGGTAATCACCCTTATACGAAAATCATGAAGGAATTTTATCACAAATCTGACAACAAACCAAAGATTTTTGGAATGACTGCCTCACCTGTTATTAGAAAAGGTACGGTCTAA

Protein sequence

MYNPVEENCDGARKRSFNDMESSVTSDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAVLETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRATGNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKGTV

Homology

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BLAST of CmaCh05G010110 vs. Swiss-Prot
Match: DCL3A_ORYSJ (Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 7.9e-61
Identity = 118/201 (58.71%), Postives = 143/201 (71.14%), Query Frame = 1


Query: 14  KRSFNDMESSVTSDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAVLETGAGKTMIAVM 73
           KRS         + +    K   + F PRRYQ++V+EV M+RNTIA+L+TGAGKTMIAVM
Sbjct: 5   KRSLESSSQEHEAGKQKLQKRECQDFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVM 64

Query: 74  LIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEVAEYYGAMGVDDWN 133
           LIKE GK  ++    K IIFLAPTV LV Q    Q  VI++ TDFEV +YYGA GVD W 
Sbjct: 65  LIKEFGKINRTKNAGKVIIFLAPTVQLVTQ----QCEVIEIHTDFEVEQYYGAKGVDQWT 124

Query: 134 MNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRATGNHPYTKIMKEFY 193
              W+++ S+  V+VMTPQ+ L ALR A+  L  V LMI DECH ATGNHPYT+IMKEFY
Sbjct: 125 GPRWQEQISKYQVMVMTPQVFLQALRNAFLILDMVSLMIFDECHHATGNHPYTRIMKEFY 184

Query: 194 HKSDNKPKIFGMTASPVIRKG 215
           HKS++KP +FGMTASPVIRKG
Sbjct: 185 HKSEHKPSVFGMTASPVIRKG 201

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BLAST of CmaCh05G010110 vs. Swiss-Prot
Match: DCL3_ARATH (Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 1.2e-48
Identity = 104/203 (51.23%), Postives = 132/203 (65.02%), Query Frame = 1


Query: 14  KRSFNDMESSVTSDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAVLETGAGKTMIAVM 73
           KR F++++     D  +     D       Y+++V+EV   RN IAVL TG  K+ I   
Sbjct: 20  KRKFSEIDGDQNLDSVSSPMMTDSN---GSYELKVYEVAKNRNIIAVLGTGIDKSEITKR 79

Query: 74  LIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEVAEYYGAMGVDDWN 133
           LIK +G    S  DK+ IIFLAPTV+LV Q    Q   I+   + +V EY+GA GVD W 
Sbjct: 80  LIKAMGS---SDTDKRLIIFLAPTVNLVKQ----QCCEIRALVNLKVEEYFGAKGVDKWT 139

Query: 134 MNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRATGNHPYTKIMKEFY 193
              W++E S+ DVLVMTPQILLD LR A+ +L  VCL+I+DECH  TGNHPY K+MKEFY
Sbjct: 140 SQRWDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHPYAKLMKEFY 199

Query: 194 HKSDNKPKIFGMTASPVIRKGTV 217
           H+S +KPKIFG+TAS VIRKG V
Sbjct: 200 HESTSKPKIFGLTASAVIRKGIV 212

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BLAST of CmaCh05G010110 vs. Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=3 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 2.1e-45
Identity = 92/176 (52.27%), Postives = 123/176 (69.89%), Query Frame = 1


Query: 41  PRRYQM-EVFEVGMKRNTIAVLETGAGKTMIAVMLIKEIGKAMKSS-GDKKFIIFLAPTV 100
           PR  Q+ EVFE  ++ NTIAVL+TG+GKTM+AVML +E  + +++    ++ ++FLAPTV
Sbjct: 38  PRTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTV 97

Query: 101 HLVHQARTFQFNVIKVQTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDAL 160
           HLVHQ    QF VI+  TD +V    GA  V +W  + W++E    +++VMTPQILLDAL
Sbjct: 98  HLVHQ----QFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTPQILLDAL 157

Query: 161 RKAYFRLGTVCLMIMDECHRATGNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 215
           R A+  +  V L+I DECHRA G+HPY +IMKEFY  S  +P +FGMTASPV  KG
Sbjct: 158 RHAFLTMSAVSLLIFDECHRACGSHPYARIMKEFYFGSQWRPDVFGMTASPVATKG 209

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BLAST of CmaCh05G010110 vs. Swiss-Prot
Match: DCL1_ARATH (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 6.3e-42
Identity = 89/175 (50.86%), Postives = 115/175 (65.71%), Query Frame = 1


Query: 42  RRYQMEVFEVGMKRNTIAVLETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLV 101
           RRYQ++V E    +NTIA LETGAGKT+IA++LIK + K + S   K   +FL P V LV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309

Query: 102 HQARTFQFNVIKVQTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKA 161
           +Q    Q  VI+ QT F+V  Y G MG D W+   W++E   + VLVMT QILL+ LR +
Sbjct: 310 YQ----QAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHS 369

Query: 162 YFRLGTVCLMIMDECHRATGNHPYTKIMKEFYHKS--DNKPKIFGMTASPVIRKG 215
             R+ T+ L+I+DECH A   HPY+ +M EFYH +  D +P IFGMTASPV  KG
Sbjct: 370 IIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKG 420

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BLAST of CmaCh05G010110 vs. Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-39
Identity = 86/186 (46.24%), Postives = 115/186 (61.83%), Query Frame = 1


Query: 34  PMDEGFIPRRYQMEVFEVGMKRNTIAVLETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIF 93
           P D   + R YQ+E  E  ++ NT+A LETG+GKT+IAVML++     ++    ++F +F
Sbjct: 27  PPDPKTMARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVF 86

Query: 94  LAPTVHLVHQARTFQFNVIKVQTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQI 153
           L PTV LV Q    Q  V++  TD  V ++ G MGVD W+   W  +  + +VLVMTPQI
Sbjct: 87  LVPTVVLVGQ----QARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQI 146

Query: 154 LLDALRKAYFRLGTVCLMIMDECHRATGNHPYTKIMKEFYH------KSDNKPKIFGMTA 213
           LLD LR ++FRL  + L+I DECH A GN PY  I KEFYH       SD  P+IFGM+A
Sbjct: 147 LLDNLRHSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSA 206

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BLAST of CmaCh05G010110 vs. TrEMBL
Match: A0A0A0KD17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361370 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.3e-99
Identity = 185/214 (86.45%), Postives = 196/214 (91.59%), Query Frame = 1


Query: 1   MYNPVEENCDGARKRSFNDMESSVTSDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAV 60
           M+ P EEN DGARKR F+D+E SV SDQ+NF+  + EGFIPRRYQMEVFEVGM+RNTIAV
Sbjct: 1   MHEPEEENRDGARKRRFSDLEPSVASDQSNFN--VAEGFIPRRYQMEVFEVGMRRNTIAV 60

Query: 61  LETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEV 120
           L TG+GKTMIAVMLIKEIGKAMKSS DKK IIFLAPTVHLVHQ    QFNVIK  TDFEV
Sbjct: 61  LGTGSGKTMIAVMLIKEIGKAMKSSSDKKLIIFLAPTVHLVHQ----QFNVIKDHTDFEV 120

Query: 121 AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRAT 180
           AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGT+CLMI+DECHRAT
Sbjct: 121 AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTICLMIIDECHRAT 180

Query: 181 GNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 215
           GNHPYTKIMKEFYHKSD+KPKIFGMTASPVIRKG
Sbjct: 181 GNHPYTKIMKEFYHKSDSKPKIFGMTASPVIRKG 208

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BLAST of CmaCh05G010110 vs. TrEMBL
Match: A0A067G548_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0003792mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.1e-72
Identity = 140/211 (66.35%), Postives = 165/211 (78.20%), Query Frame = 1


Query: 14  KRSFNDMESSVTSDQ--TNFDKPMDE--------GFIPRRYQMEVFEVGMKRNTIAVLET 73
           KRSF ++ S    D   +  D  +D          FIPR YQ++VFEV  +RNTIAVLET
Sbjct: 9   KRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLET 68

Query: 74  GAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEVAEY 133
           GAGKTMIAVMLIK+I +A+KS+G KK IIFLAPTVHLVHQ    Q++VI+V TDFEV EY
Sbjct: 69  GAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ----QYDVIRVHTDFEVEEY 128

Query: 134 YGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRATGNH 193
           YGA GVD+W+  CW+KE ++ DVLVMTPQILLDALRKA+  L  VC +++DECH ATGNH
Sbjct: 129 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 188

Query: 194 PYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 215
           PYTKIMKEFYHKSDNKPK+FGMTASPV+RKG
Sbjct: 189 PYTKIMKEFYHKSDNKPKVFGMTASPVVRKG 215

[Close]

BLAST of CmaCh05G010110 vs. TrEMBL
Match: V4UUC2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007239mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.1e-72
Identity = 140/211 (66.35%), Postives = 165/211 (78.20%), Query Frame = 1


Query: 14  KRSFNDMESSVTSDQ--TNFDKPMDE--------GFIPRRYQMEVFEVGMKRNTIAVLET 73
           KRSF ++ S    D   +  D  +D          FIPR YQ++VFEV  +RNTIAVLET
Sbjct: 9   KRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLET 68

Query: 74  GAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEVAEY 133
           GAGKTMIAVMLIK+I +A+KS+G KK IIFLAPTVHLVHQ    Q++VI+V TDFEV EY
Sbjct: 69  GAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ----QYDVIRVHTDFEVEEY 128

Query: 134 YGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRATGNH 193
           YGA GVD+W+  CW+KE ++ DVLVMTPQILLDALRKA+  L  VC +++DECH ATGNH
Sbjct: 129 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 188

Query: 194 PYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 215
           PYTKIMKEFYHKSDNKPK+FGMTASPV+RKG
Sbjct: 189 PYTKIMKEFYHKSDNKPKVFGMTASPVVRKG 215

[Close]

BLAST of CmaCh05G010110 vs. TrEMBL
Match: V4UPJ4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007239mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.1e-72
Identity = 140/211 (66.35%), Postives = 165/211 (78.20%), Query Frame = 1


Query: 14  KRSFNDMESSVTSDQ--TNFDKPMDE--------GFIPRRYQMEVFEVGMKRNTIAVLET 73
           KRSF ++ S    D   +  D  +D          FIPR YQ++VFEV  +RNTIAVLET
Sbjct: 9   KRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLET 68

Query: 74  GAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEVAEY 133
           GAGKTMIAVMLIK+I +A+KS+G KK IIFLAPTVHLVHQ    Q++VI+V TDFEV EY
Sbjct: 69  GAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ----QYDVIRVHTDFEVEEY 128

Query: 134 YGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRATGNH 193
           YGA GVD+W+  CW+KE ++ DVLVMTPQILLDALRKA+  L  VC +++DECH ATGNH
Sbjct: 129 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 188

Query: 194 PYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 215
           PYTKIMKEFYHKSDNKPK+FGMTASPV+RKG
Sbjct: 189 PYTKIMKEFYHKSDNKPKVFGMTASPVVRKG 215

[Close]

BLAST of CmaCh05G010110 vs. TrEMBL
Match: A0A067G252_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0003792mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.1e-72
Identity = 140/211 (66.35%), Postives = 165/211 (78.20%), Query Frame = 1


Query: 14  KRSFNDMESSVTSDQ--TNFDKPMDE--------GFIPRRYQMEVFEVGMKRNTIAVLET 73
           KRSF ++ S    D   +  D  +D          FIPR YQ++VFEV  +RNTIAVLET
Sbjct: 9   KRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLET 68

Query: 74  GAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEVAEY 133
           GAGKTMIAVMLIK+I +A+KS+G KK IIFLAPTVHLVHQ    Q++VI+V TDFEV EY
Sbjct: 69  GAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ----QYDVIRVHTDFEVEEY 128

Query: 134 YGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRATGNH 193
           YGA GVD+W+  CW+KE ++ DVLVMTPQILLDALRKA+  L  VC +++DECH ATGNH
Sbjct: 129 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 188

Query: 194 PYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 215
           PYTKIMKEFYHKSDNKPK+FGMTASPV+RKG
Sbjct: 189 PYTKIMKEFYHKSDNKPKVFGMTASPVVRKG 215

[Close]

BLAST of CmaCh05G010110 vs. TAIR10
Match: AT3G43920.2 (AT3G43920.2 dicer-like 3)

HSP 1 Score: 194.5 bits (493), Expect = 6.7e-50
Identity = 104/203 (51.23%), Postives = 132/203 (65.02%), Query Frame = 1


Query: 14  KRSFNDMESSVTSDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAVLETGAGKTMIAVM 73
           KR F++++     D  +     D       Y+++V+EV   RN IAVL TG  K+ I   
Sbjct: 20  KRKFSEIDGDQNLDSVSSPMMTDSN---GSYELKVYEVAKNRNIIAVLGTGIDKSEITKR 79

Query: 74  LIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEVAEYYGAMGVDDWN 133
           LIK +G    S  DK+ IIFLAPTV+LV Q    Q   I+   + +V EY+GA GVD W 
Sbjct: 80  LIKAMGS---SDTDKRLIIFLAPTVNLVKQ----QCCEIRALVNLKVEEYFGAKGVDKWT 139

Query: 134 MNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRATGNHPYTKIMKEFY 193
              W++E S+ DVLVMTPQILLD LR A+ +L  VCL+I+DECH  TGNHPY K+MKEFY
Sbjct: 140 SQRWDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHPYAKLMKEFY 199

Query: 194 HKSDNKPKIFGMTASPVIRKGTV 217
           H+S +KPKIFG+TAS VIRKG V
Sbjct: 200 HESTSKPKIFGLTASAVIRKGIV 212

[Close]

BLAST of CmaCh05G010110 vs. TAIR10
Match: AT1G01040.2 (AT1G01040.2 dicer-like 1)

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-43
Identity = 89/175 (50.86%), Postives = 115/175 (65.71%), Query Frame = 1


Query: 42  RRYQMEVFEVGMKRNTIAVLETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLV 101
           RRYQ++V E    +NTIA LETGAGKT+IA++LIK + K + S   K   +FL P V LV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309

Query: 102 HQARTFQFNVIKVQTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKA 161
           +Q    Q  VI+ QT F+V  Y G MG D W+   W++E   + VLVMT QILL+ LR +
Sbjct: 310 YQ----QAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHS 369

Query: 162 YFRLGTVCLMIMDECHRATGNHPYTKIMKEFYHKS--DNKPKIFGMTASPVIRKG 215
             R+ T+ L+I+DECH A   HPY+ +M EFYH +  D +P IFGMTASPV  KG
Sbjct: 370 IIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKG 420

[Close]

BLAST of CmaCh05G010110 vs. TAIR10
Match: AT3G03300.1 (AT3G03300.1 dicer-like 2)

HSP 1 Score: 161.8 bits (408), Expect = 4.8e-40
Identity = 85/178 (47.75%), Postives = 114/178 (64.04%), Query Frame = 1


Query: 42  RRYQMEVFEVGMKRNTIAVLETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLV 101
           R YQ+E  E  +K+NTI  LETG+GKT+IA+ML++      +      F +FL P V LV
Sbjct: 25  RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPC-FCVFLVPQVVLV 84

Query: 102 HQARTFQFNVIKVQTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKA 161
            Q    Q   +K+ TD +V  Y+G MGVD W+ + W++E  + +VLVMTP ILLDALR +
Sbjct: 85  TQ----QAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHS 144

Query: 162 YFRLGTVCLMIMDECHRATGNHPYTKIMKEFYHK-----SDNKPKIFGMTASPVIRKG 215
           +  L  + ++I+DECH A G HPY  IM+EFYHK     + N P+IFGMTAS V  KG
Sbjct: 145 FLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG 197

[Close]

BLAST of CmaCh05G010110 vs. TAIR10
Match: AT5G20320.1 (AT5G20320.1 dicer-like 4)

HSP 1 Score: 138.3 bits (347), Expect = 5.7e-33
Identity = 88/203 (43.35%), Postives = 119/203 (58.62%), Query Frame = 1


Query: 16  SFNDMESSVTSDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAVLETGAGKTMIAVMLI 75
           S + + S+  +D  +     D   I RRYQ+E+ +   + N I  L TG GKT IAVMLI
Sbjct: 99  SSSSLFSAAGTDDPSPKMEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLI 158

Query: 76  KEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEVAEYYGAMGVDDWNMN 135
            E+G  + S   K   IFLAPTV LV Q    Q  VI    +F+VA + G   +   +  
Sbjct: 159 YELGHLVLSP-KKSVCIFLAPTVALVEQ----QAKVIADSVNFKVAIHCGGKRIVKSHSE 218

Query: 136 CWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRA--TGNHPYTKIMKEFY 195
            WE+E +  +VLVMTPQILL  L+  + ++  + L+I DECH A    NHPY +IMK FY
Sbjct: 219 -WEREIAANEVLVMTPQILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFY 278

Query: 196 -HKSDNKPKIFGMTASPVIRKGT 216
             +S  +P+IFGMTASPV+ KG+
Sbjct: 279 KSESLQRPRIFGMTASPVVGKGS 295

[Close]

BLAST of CmaCh05G010110 vs. NCBI nr
Match: gi|659089601|ref|XP_008445598.1| (PREDICTED: endoribonuclease Dicer homolog 3 [Cucumis melo])

HSP 1 Score: 376.7 bits (966), Expect = 2.7e-101
Identity = 189/214 (88.32%), Postives = 197/214 (92.06%), Query Frame = 1


Query: 1   MYNPVEENCDGARKRSFNDMESSVTSDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAV 60
           M+ P +EN DGARKR F D+E SV SDQ+NF+  M EGFIPRRYQMEVFEVGM+RNTIAV
Sbjct: 1   MHEPEQENRDGARKRRFCDLEPSVASDQSNFN--MAEGFIPRRYQMEVFEVGMRRNTIAV 60

Query: 61  LETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEV 120
           LETG+GKTMIAVMLIKEIGKAMKSSGDKK IIFLAPTVHLVHQ    QFNVIK  TDFEV
Sbjct: 61  LETGSGKTMIAVMLIKEIGKAMKSSGDKKLIIFLAPTVHLVHQ----QFNVIKDHTDFEV 120

Query: 121 AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRAT 180
           AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMI+DECHRAT
Sbjct: 121 AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIIDECHRAT 180

Query: 181 GNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 215
           GNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKG
Sbjct: 181 GNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 208

[Close]

BLAST of CmaCh05G010110 vs. NCBI nr
Match: gi|778715216|ref|XP_011657366.1| (PREDICTED: endoribonuclease Dicer homolog 3 isoform X3 [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 1.9e-99
Identity = 185/214 (86.45%), Postives = 196/214 (91.59%), Query Frame = 1


Query: 1   MYNPVEENCDGARKRSFNDMESSVTSDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAV 60
           M+ P EEN DGARKR F+D+E SV SDQ+NF+  + EGFIPRRYQMEVFEVGM+RNTIAV
Sbjct: 1   MHEPEEENRDGARKRRFSDLEPSVASDQSNFN--VAEGFIPRRYQMEVFEVGMRRNTIAV 60

Query: 61  LETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEV 120
           L TG+GKTMIAVMLIKEIGKAMKSS DKK IIFLAPTVHLVHQ    QFNVIK  TDFEV
Sbjct: 61  LGTGSGKTMIAVMLIKEIGKAMKSSSDKKLIIFLAPTVHLVHQ----QFNVIKDHTDFEV 120

Query: 121 AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRAT 180
           AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGT+CLMI+DECHRAT
Sbjct: 121 AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTICLMIIDECHRAT 180

Query: 181 GNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 215
           GNHPYTKIMKEFYHKSD+KPKIFGMTASPVIRKG
Sbjct: 181 GNHPYTKIMKEFYHKSDSKPKIFGMTASPVIRKG 208

[Close]

BLAST of CmaCh05G010110 vs. NCBI nr
Match: gi|778715209|ref|XP_011657364.1| (PREDICTED: endoribonuclease Dicer homolog 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 346.3 bits (887), Expect = 3.9e-92
Identity = 176/216 (81.48%), Postives = 191/216 (88.43%), Query Frame = 1


Query: 1   MYNPVEENCDGARKRSFNDMESSVTSDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAV 60
           M+ P EEN DGARKR F+D+E SV SDQ+NF+  + EGFIPRRYQMEVFEVGM+RNTIAV
Sbjct: 1   MHEPEEENRDGARKRRFSDLEPSVASDQSNFN--VAEGFIPRRYQMEVFEVGMRRNTIAV 60

Query: 61  LETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEV 120
           L TG+GKTMIAVMLIKEIGKAMKSS DKK IIFLAPTVHLVHQ    QFNVIK  TDFEV
Sbjct: 61  LGTGSGKTMIAVMLIKEIGKAMKSSSDKKLIIFLAPTVHLVHQ----QFNVIKDHTDFEV 120

Query: 121 AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRAT 180
           AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGT+CLMI+DECHRAT
Sbjct: 121 AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTICLMIIDECHRAT 180

Query: 181 GNHPYTKIM--KEFYHKSDNKPKIFGMTASPVIRKG 215
               ++ ++  KEFYHKSD+KPKIFGMTASPVIRKG
Sbjct: 181 EEEYFSNLLLVKEFYHKSDSKPKIFGMTASPVIRKG 210

[Close]

BLAST of CmaCh05G010110 vs. NCBI nr
Match: gi|778715213|ref|XP_011657365.1| (PREDICTED: endoribonuclease Dicer homolog 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 344.4 bits (882), Expect = 1.5e-91
Identity = 176/215 (81.86%), Postives = 190/215 (88.37%), Query Frame = 1


Query: 1   MYNPVEENCDGARKRSFNDMESSVTSDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAV 60
           M+ P EEN DGARKR F+D+E SV SDQ+NF+  + EGFIPRRYQMEVFEVGM+RNTIAV
Sbjct: 1   MHEPEEENRDGARKRRFSDLEPSVASDQSNFN--VAEGFIPRRYQMEVFEVGMRRNTIAV 60

Query: 61  LETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQARTFQFNVIKVQTDFEV 120
           L TG+GKTMIAVMLIKEIGKAMKSS DKK IIFLAPTVHLVHQ    QFNVIK  TDFEV
Sbjct: 61  LGTGSGKTMIAVMLIKEIGKAMKSSSDKKLIIFLAPTVHLVHQ----QFNVIKDHTDFEV 120

Query: 121 AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRAT 180
           AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGT+CLMI+DECHRAT
Sbjct: 121 AEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTICLMIIDECHRAT 180

Query: 181 GNH-PYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 215
             +     ++KEFYHKSD+KPKIFGMTASPVIRKG
Sbjct: 181 EEYFSNLLLVKEFYHKSDSKPKIFGMTASPVIRKG 209

[Close]

BLAST of CmaCh05G010110 vs. NCBI nr
Match: gi|720018503|ref|XP_010261808.1| (PREDICTED: endoribonuclease Dicer homolog 3a isoform X2 [Nelumbo nucifera])

HSP 1 Score: 278.9 bits (712), Expect = 7.7e-72
Identity = 132/176 (75.00%), Postives = 154/176 (87.50%), Query Frame = 1


Query: 39  FIPRRYQMEVFEVGMKRNTIAVLETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTV 98
           F PR YQ+++F+V +++NTIAVLETGAGKTMIAVMLIKEIG+AMK+SG+K  IIFLAPTV
Sbjct: 24  FEPRSYQIQIFQVALRKNTIAVLETGAGKTMIAVMLIKEIGRAMKTSGNKMLIIFLAPTV 83

Query: 99  HLVHQARTFQFNVIKVQTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDAL 158
           HLV+Q    QF VIK+ TDF+V EYYGA G+D+W+  CWEKE SE+DV+VMTPQILLDAL
Sbjct: 84  HLVNQ----QFEVIKIHTDFKVEEYYGAKGIDEWSAKCWEKEISEQDVMVMTPQILLDAL 143

Query: 159 RKAYFRLGTVCLMIMDECHRATGNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKG 215
           RKA+ R+  VCL+I DECHRATGNHPY KIMKEFYHKS NKPKIFGMTASPV+RKG
Sbjct: 144 RKAFLRIEMVCLVIFDECHRATGNHPYMKIMKEFYHKSRNKPKIFGMTASPVVRKG 195

The following BLAST results are available for this feature:

BLAST of CmaCh05G010110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DCL3A_ORYSJ	7.9e-61	58.71	Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 ...	[more]
DCL3_ARATH	1.2e-48	51.23	Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2	[more]
DCL3B_ORYSJ	2.1e-45	52.27	Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=3 ...	[more]
DCL1_ARATH	6.3e-42	50.86	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2	[more]
DCL2B_ORYSJ	2.9e-39	46.24	Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 ...	[more]

BLAST of CmaCh05G010110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD17_CUCSA	1.3e-99	86.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361370 PE=4 SV=1	[more]
A0A067G548_CITSI	9.1e-72	66.35	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0003792mg PE=4 ...	[more]
V4UUC2_9ROSI	9.1e-72	66.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007239mg PE=4 SV=1	[more]
V4UPJ4_9ROSI	9.1e-72	66.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007239mg PE=4 SV=1	[more]
A0A067G252_CITSI	9.1e-72	66.35	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0003792mg PE=4 ...	[more]

BLAST of CmaCh05G010110 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G43920.2	6.7e-50	51.23	dicer-like 3	[more]
AT1G01040.2	3.6e-43	50.86	dicer-like 1	[more]
AT3G03300.1	4.8e-40	47.75	dicer-like 2	[more]
AT5G20320.1	5.7e-33	43.35	dicer-like 4	[more]

BLAST of CmaCh05G010110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089601\|ref\|XP_008445598.1\|	2.7e-101	88.32	PREDICTED: endoribonuclease Dicer homolog 3 [Cucumis melo]	[more]
gi\|778715216\|ref\|XP_011657366.1\|	1.9e-99	86.45	PREDICTED: endoribonuclease Dicer homolog 3 isoform X3 [Cucumis sativus]	[more]
gi\|778715209\|ref\|XP_011657364.1\|	3.9e-92	81.48	PREDICTED: endoribonuclease Dicer homolog 3 isoform X1 [Cucumis sativus]	[more]
gi\|778715213\|ref\|XP_011657365.1\|	1.5e-91	81.86	PREDICTED: endoribonuclease Dicer homolog 3 isoform X2 [Cucumis sativus]	[more]
gi\|720018503\|ref\|XP_010261808.1\|	7.7e-72	75.00	PREDICTED: endoribonuclease Dicer homolog 3a isoform X2 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006935	Helicase/UvrB_N
IPR014001	Helicase_ATP-bd
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0016787	hydrolase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G010110.1	CmaCh05G010110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006935	Helicase/UvrB, N-terminal	PFAM	PF04851	ResIII	coord: 54..209 score: 3.6
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 37..216 score: 7.0
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROFILE	PS51192	HELICASE_ATP_BIND_1	coord: 48..216 score: 17
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 39..208 score: 3.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 37..210 score: 8.75
None	No IPR available	PANTHER	PTHR14950	HELICASE-RELATED	coord: 5..216 score: 2.1E
None	No IPR available	PANTHER	PTHR14950:SF21	ENDORIBONUCLEASE DICER HOMOLOG 3	coord: 5..216 score: 2.1E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G010110	Cucurbita pepo (Zucchini)	cmacpeB767
CmaCh05G010110	Silver-seed gourd	carcmaB0258
CmaCh05G010110	Cucurbita moschata (Rifu)	cmacmoB787