CmaCh05G010060 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G010060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Copper transporter
Location	Cma_Chr05 : 8074750 .. 8075527 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTTCTACTGGAGCAAGCAGGTGACGCTCCTGATCGATTCATGGCGGACAAATTCATGGCTAAGTTATTCCCTCTCCTTGCTTGCTTGCTTCATCGTTTCCGTTTTCTACCAGTATTTGGAGAGCTATCGCATCCGTTTGAAGCTTCTTTCATGTCGGAAACCGTCGCCATCGGAGATCGAGGTTCCTCTCCTTCGATCTAAAGTGGCTGGTAAGTGGACGGCTGTGAAATTTGCAGAATCTCTGTTTTTCGGAGTCAACTCGGCGATAGGTTACCTTCTGATGCTCGCGGTCATGTCCTTTAATGGTGGAGTTTTCGTTGCGATTGTGTTAGGGCTTGCGTTTGGTTATTTGGCGTTTAGGAGTGATGATGAGGATTTCAGTGTTAGCTTTGAAAATCCATGTGCCTGTGCTTAGTTCTTCCTCAGTATTGCGAATCAGATGAAAGCTGAATGAAAAGTAATTGCTGAATCTGCTCCTTTCAGATACGAATCGGTTTCTTGCATTGTCTTATTAGATCTGTTTCTTTTCATTTCTTGCTAAATTGATTGGCCGTTTACTTCAATTTCTGCAGATCTGTTTGGATGTTTTGTGGTTAGATAATTTGTGCATAAACGGGGTAAAATATTGTGATTCGTCTGTCAAATTGTGGAAAATTTCAATTAGGGGGAGAAACTCTACTGTTTGATTATGATCCTTTTTGTTCTTTTGTTTATCAATTTCGATTTGCAGTTTGACAGATAAGATGTCTGAAAATGACTCCATAAATCCTTAA

mRNA sequence

ATGACCTTCTACTGGAGCAAGCAGGTGACGCTCCTGATCGATTCATGGCGGACAAATTCATGGCTAAGTTATTCCCTCTCCTTGCTTGCTTGCTTCATCGTTTCCGTTTTCTACCAGTATTTGGAGAGCTATCGCATCCGTTTGAAGCTTCTTTCATGTCGGAAACCGTCGCCATCGGAGATCGAGGTTCCTCTCCTTCGATCTAAAGTGGCTGATAAGATGTCTGAAAATGACTCCATAAATCCTTAA

Coding sequence (CDS)

ATGACCTTCTACTGGAGCAAGCAGGTGACGCTCCTGATCGATTCATGGCGGACAAATTCATGGCTAAGTTATTCCCTCTCCTTGCTTGCTTGCTTCATCGTTTCCGTTTTCTACCAGTATTTGGAGAGCTATCGCATCCGTTTGAAGCTTCTTTCATGTCGGAAACCGTCGCCATCGGAGATCGAGGTTCCTCTCCTTCGATCTAAAGTGGCTGATAAGATGTCTGAAAATGACTCCATAAATCCTTAA

Protein sequence

MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSEIEVPLLRSKVADKMSENDSINP

Homology

[Close]

BLAST of CmaCh05G010060 vs. Swiss-Prot
Match: COP51_ORYSJ (Copper transporter 5.1 OS=Oryza sativa subsp. japonica GN=COPT5.1 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.2e-13
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPS 58
          MTFYW K VT+L D WRT +W  Y LSL+A  + S FYQYLE++RIR+KLL+  KP+
Sbjct: 4  MTFYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRVKLLAGAKPA 60

[Close]

BLAST of CmaCh05G010060 vs. Swiss-Prot
Match: COPT5_ARATH (Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-12
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSP-- 60
          MTFYW  + T+L D W+T+SWLSY L+L+ACF+ S FYQYLE+ RI+ K LS  + +P  
Sbjct: 4  MTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRRIQFKSLSSSRRAPPP 63

Query: 61 ----SEIEVPLL 67
              S +  PL+
Sbjct: 64 PRSSSGVSAPLI 75

[Close]

BLAST of CmaCh05G010060 vs. Swiss-Prot
Match: COP52_ORYSJ (Putative copper transporter 5.2 OS=Oryza sativa subsp. japonica GN=COPT5.2 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-08
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLK 50
          M+FYW   VT+L D WRT+ W  Y  SLLA F+ +  YQ+LE+ R+RL+
Sbjct: 4  MSFYWGTSVTILFDGWRTSGWPGYLASLLALFLAAALYQHLEARRVRLR 52

[Close]

BLAST of CmaCh05G010060 vs. TrEMBL
Match: A0A0A0KIJ7_CUCSA (Copper transporter OS=Cucumis sativus GN=Csa_6G361380 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 9.9e-27
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSE 60
          MTFYWS++VTLLI+SWRT SW SYSLSLLACFIVS+FYQYLE+YRIRLKLL C KPSPSE
Sbjct: 4  MTFYWSREVTLLINSWRTTSWFSYSLSLLACFIVSIFYQYLENYRIRLKLLQCPKPSPSE 63

Query: 61 IEVPLLRSKVADK 74
          IE PLLRSKVA K
Sbjct: 64 IEAPLLRSKVAGK 76

[Close]

BLAST of CmaCh05G010060 vs. TrEMBL
Match: G7J942_MEDTR (Ctr family copper transporter OS=Medicago truncatula GN=MTR_3g105330 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.4e-19
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSE 60
          MTFYWSK+VTLL DSW+T+SW SY+LSLLAC IVS+FYQ+LE+ RIRLKLL+  KP P+ 
Sbjct: 4  MTFYWSKKVTLLFDSWKTDSWTSYALSLLACLIVSIFYQFLENRRIRLKLLASGKPFPAA 63

Query: 61 IEVPLLRSKVA 72
          IE PLLR   A
Sbjct: 64 IEAPLLRRTFA 74

[Close]

BLAST of CmaCh05G010060 vs. TrEMBL
Match: I3S402_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-18
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSE 60
          MTFYW K+VT+L DSW+T+SW SY LSLLACFI++VFYQ LE+ RIRLKL +  KP P E
Sbjct: 4  MTFYWGKKVTILFDSWKTDSWTSYILSLLACFIIAVFYQVLENRRIRLKLFAAGKPVPLE 63

Query: 61 IEVPLLRSKV 71
          IE PL+R K+
Sbjct: 64 IETPLIRRKI 73

[Close]

BLAST of CmaCh05G010060 vs. TrEMBL
Match: A0A151RSY0_CAJCA (Copper transporter 1 OS=Cajanus cajan GN=KK1_032851 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.9e-18
Identity = 49/71 (69.01%), Postives = 54/71 (76.06%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSE 60
          MTFYWSK VTLLI SW+TN W  Y LSL AC +VSVFYQ LE+ RIRLKL+   KP P E
Sbjct: 4  MTFYWSKNVTLLIGSWKTNDWTEYILSLFACLVVSVFYQVLENRRIRLKLIGAGKPFPPE 63

Query: 61 IEVPLLRSKVA 72
          IE PLLR K+A
Sbjct: 64 IETPLLRRKLA 74

[Close]

BLAST of CmaCh05G010060 vs. TrEMBL
Match: I1K8H9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G057400 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-18
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSE 60
          MTFYWS++V LLIDSW+TN W  Y L+LLAC +V+ FYQ+LE+ RIRLKL+   KP P+E
Sbjct: 4  MTFYWSRKVNLLIDSWKTNDWTDYLLTLLACLVVAAFYQFLENRRIRLKLIGSGKPFPAE 63

Query: 61 IEVPLLRSKVA 72
          IE PLLR K+A
Sbjct: 64 IEAPLLRRKLA 74

[Close]

BLAST of CmaCh05G010060 vs. TAIR10
Match: AT5G20650.1 (AT5G20650.1 copper transporter 5)

HSP 1 Score: 73.6 bits (179), Expect = 6.5e-14
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSP-- 60
          MTFYW  + T+L D W+T+SWLSY L+L+ACF+ S FYQYLE+ RI+ K LS  + +P  
Sbjct: 4  MTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRRIQFKSLSSSRRAPPP 63

Query: 61 ----SEIEVPLL 67
              S +  PL+
Sbjct: 64 PRSSSGVSAPLI 75

[Close]

BLAST of CmaCh05G010060 vs. NCBI nr
Match: gi|659089507|ref|XP_008445546.1| (PREDICTED: copper transporter 5.1 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 3.4e-28
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSE 60
          MTFYWSK+VTLLI+SWRTNSWLSYSLSLLACFIVSVFYQYLE+YRIRLKLL C KPSPSE
Sbjct: 4  MTFYWSKEVTLLINSWRTNSWLSYSLSLLACFIVSVFYQYLENYRIRLKLLQCPKPSPSE 63

Query: 61 IEVPLLRSKVADK 74
          IE PLLRSKVA K
Sbjct: 64 IEAPLLRSKVAGK 76

[Close]

BLAST of CmaCh05G010060 vs. NCBI nr
Match: gi|449452941|ref|XP_004144217.1| (PREDICTED: copper transporter 5.1 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSE 60
          MTFYWS++VTLLI+SWRT SW SYSLSLLACFIVS+FYQYLE+YRIRLKLL C KPSPSE
Sbjct: 4  MTFYWSREVTLLINSWRTTSWFSYSLSLLACFIVSIFYQYLENYRIRLKLLQCPKPSPSE 63

Query: 61 IEVPLLRSKVADK 74
          IE PLLRSKVA K
Sbjct: 64 IEAPLLRSKVAGK 76

[Close]

BLAST of CmaCh05G010060 vs. NCBI nr
Match: gi|1009134577|ref|XP_015884523.1| (PREDICTED: copper transporter 5.1-like [Ziziphus jujuba])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPS- 60
          MTFYWSKQVTLLIDSWRTNSW SY L+LLAC IVS FYQYLE  R+RLKL S  KPSPS 
Sbjct: 4  MTFYWSKQVTLLIDSWRTNSWTSYILTLLACLIVSAFYQYLEDLRLRLKLASAGKPSPSS 63

Query: 61 ---EIEVPLLR--SKVADKMSE 77
             +IE+PLL+  S++  K S+
Sbjct: 64 SPAQIEIPLLQKFSRLQGKWSQ 85

[Close]

BLAST of CmaCh05G010060 vs. NCBI nr
Match: gi|357465895|ref|XP_003603232.1| (Ctr family copper transporter [Medicago truncatula])

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-19
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSE 60
          MTFYWSK+VTLL DSW+T+SW SY+LSLLAC IVS+FYQ+LE+ RIRLKLL+  KP P+ 
Sbjct: 4  MTFYWSKKVTLLFDSWKTDSWTSYALSLLACLIVSIFYQFLENRRIRLKLLASGKPFPAA 63

Query: 61 IEVPLLRSKVA 72
          IE PLLR   A
Sbjct: 64 IEAPLLRRTFA 74

[Close]

BLAST of CmaCh05G010060 vs. NCBI nr
Match: gi|388493856|gb|AFK34994.1| (unknown [Lotus japonicus])

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-18
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSE 60
          MTFYW K+VT+L DSW+T+SW SY LSLLACFI++VFYQ LE+ RIRLKL +  KP P E
Sbjct: 4  MTFYWGKKVTILFDSWKTDSWTSYILSLLACFIIAVFYQVLENRRIRLKLFAAGKPVPLE 63

Query: 61 IEVPLLRSKV 71
          IE PL+R K+
Sbjct: 64 IETPLIRRKI 73

The following BLAST results are available for this feature:

BLAST of CmaCh05G010060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COP51_ORYSJ	5.2e-13	59.65	Copper transporter 5.1 OS=Oryza sativa subsp. japonica GN=COPT5.1 PE=2 SV=1	[more]
COPT5_ARATH	1.2e-12	50.00	Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=1 SV=1	[more]
COP52_ORYSJ	5.1e-08	51.02	Putative copper transporter 5.2 OS=Oryza sativa subsp. japonica GN=COPT5.2 PE=3 ...	[more]

BLAST of CmaCh05G010060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIJ7_CUCSA	9.9e-27	84.93	Copper transporter OS=Cucumis sativus GN=Csa_6G361380 PE=4 SV=1	[more]
G7J942_MEDTR	3.4e-19	70.42	Ctr family copper transporter OS=Medicago truncatula GN=MTR_3g105330 PE=2 SV=1	[more]
I3S402_LOTJA	1.7e-18	67.14	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A151RSY0_CAJCA	2.9e-18	69.01	Copper transporter 1 OS=Cajanus cajan GN=KK1_032851 PE=4 SV=1	[more]
I1K8H9_SOYBN	3.8e-18	64.79	Uncharacterized protein OS=Glycine max GN=GLYMA_06G057400 PE=4 SV=1	[more]

BLAST of CmaCh05G010060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20650.1	6.5e-14	50.00	copper transporter 5	[more]

BLAST of CmaCh05G010060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089507\|ref\|XP_008445546.1\|	3.4e-28	90.41	PREDICTED: copper transporter 5.1 [Cucumis melo]	[more]
gi\|449452941\|ref\|XP_004144217.1\|	1.4e-26	84.93	PREDICTED: copper transporter 5.1 [Cucumis sativus]	[more]
gi\|1009134577\|ref\|XP_015884523.1\|	1.7e-19	68.29	PREDICTED: copper transporter 5.1-like [Ziziphus jujuba]	[more]
gi\|357465895\|ref\|XP_003603232.1\|	4.9e-19	70.42	Ctr family copper transporter [Medicago truncatula]	[more]
gi\|388493856\|gb\|AFK34994.1\|	2.4e-18	67.14	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007274	Cop_transporter

Vocabulary: **Molecular Function**
Term	Definition
GO:0005375	copper ion transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0035434	copper ion transmembrane transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035434	copper ion transmembrane transport
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005773	vacuole
molecular_function	GO:0005375	copper ion transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G010060.1	CmaCh05G010060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PANTHER	PTHR12483	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	coord: 1..70 score: 3.6
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 1..49 score: 5.
None	No IPR available	PANTHER	PTHR12483:SF39	SUBFAMILY NOT NAMED	coord: 1..70 score: 3.6
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..31 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G010060	ClCG08G009750	Watermelon (Charleston Gray)	cmawcgB711
CmaCh05G010060	Cp4.1LG11g08070	Cucurbita pepo (Zucchini)	cmacpeB767
CmaCh05G010060	Carg27031	Silver-seed gourd	carcmaB0258

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G010060	Bottle gourd (USVL1VR-Ls)	cmalsiB738
CmaCh05G010060	Cucumber (Gy14) v2	cgybcmaB845
CmaCh05G010060	Melon (DHL92) v3.6.1	cmamedB819
CmaCh05G010060	Cucumber (Chinese Long) v3	cmacucB0951
CmaCh05G010060	Watermelon (97103) v2	cmawmbB831
CmaCh05G010060	Wax gourd	cmawgoB0948
CmaCh05G010060	Cucumber (Gy14) v1	cgycmaB0075
CmaCh05G010060	Cucurbita moschata (Rifu)	cmacmoB787
CmaCh05G010060	Wild cucumber (PI 183967)	cmacpiB817
CmaCh05G010060	Cucumber (Chinese Long) v2	cmacuB806
CmaCh05G010060	Melon (DHL92) v3.5.1	cmameB726
CmaCh05G010060	Watermelon (Charleston Gray)	cmawcgB710
CmaCh05G010060	Watermelon (97103) v1	cmawmB752