CmaCh05G009240 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh05G009240
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem II CP47 reaction center protein
LocationCma_Chr05 : 7394834 .. 7395777 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACCCTGTTTTTAGAGATAAAGAAGGGCGCGAACTTTTTGTACGCCGTATGCCGACCTTTTTTGAAACATTTCCGGTTGTTTTGGTAGACGGCGACGGAATTGTTAGAGCCGATGTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAACAAGTCGGTGTAACTGTTGAGTTCTATGGTGGTGAACTCAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAGTCTGATACAAGATTGCTCTGTTCCTTTTTTCCTTTATTTTTTGATTTGACATAGATGCTGACTTTTCATTTCTTTGACTCTTATCTTGGTCTTTTTTTTATCCGGAAAAAGATCCCAACTAAACAGGTATGGAAGCTATAATTGTAAACCGAAATCAAATCTATGGAAGCATTGGTTTATACATTCCTTTTAGTCTCGACTCTAGGAATAATTTTTTTCGCTATCTTTTTTCGCGAACCGCCTAAAGTTCCAACTAAAAAGGCGAAATGATTTCTCATTATCTCAATTGAAGTACTGAGCCTCACAATATTGTGAGGCTCAGTACTTCAACTAGTCCCCGTGTTCCTCGAATGGATCTCTTAGTTGTTGAGAGGGTTGCCCAAAAGCAGTATATAAGGCATACCCAGTAA

mRNA sequence

ATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACCCTGTTTTTAGAGATAAAGAAGGGCGCGAACTTTTTGTACGCCGTATGCCGACCTTTTTTGAAACATTTCCGGTTGTTTTGGTAGACGGCGACGGAATTGTTAGAGCCGATGTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAACAAGTCGGTGTAACTGTTGAGTTCTATGGTGGTGAACTCAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTATACTGAGCCTCACAATATTGTGAGGCTCAGTACTTCAACTAGTCCCCGTGTTCCTCGAATGGATCTCTTAGTTGTTGAGAGGGTTGCCCAAAAGCAGTATATAAGGCATACCCAGTAA

Coding sequence (CDS)

ATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACCCTGTTTTTAGAGATAAAGAAGGGCGCGAACTTTTTGTACGCCGTATGCCGACCTTTTTTGAAACATTTCCGGTTGTTTTGGTAGACGGCGACGGAATTGTTAGAGCCGATGTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAACAAGTCGGTGTAACTGTTGAGTTCTATGGTGGTGAACTCAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTATACTGAGCCTCACAATATTGTGAGGCTCAGTACTTCAACTAGTCCCCGTGTTCCTCGAATGGATCTCTTAGTTGTTGAGAGGGTTGCCCAAAAGCAGTATATAAGGCATACCCAGTAA

Protein sequence

MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRVYTEPHNIVRLSTSTSPRVPRMDLLVVERVAQKQYIRHTQ
Homology
[Close]
BLAST of CmaCh05G009240 vs. Swiss-Prot
Match: PSBB_CUCSA (Photosystem II CP47 reaction center protein OS=Cucumis sativus GN=psbB PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 4.6e-101
Identity = 176/177 (99.44%), Postives = 176/177 (99.44%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLD QVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDTQVEFGAFQKLGDPTTKRV 506

[Close]
BLAST of CmaCh05G009240 vs. Swiss-Prot
Match: PSBB_SOLLC (Photosystem II CP47 reaction center protein OS=Solanum lycopersicum GN=psbB PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.0e-101
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHP+FRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 177
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]
BLAST of CmaCh05G009240 vs. Swiss-Prot
Match: PSBB_LEMMI (Photosystem II CP47 reaction center protein OS=Lemna minor GN=psbB PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.0e-101
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIA+GWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAIGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 177
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]
BLAST of CmaCh05G009240 vs. Swiss-Prot
Match: PSBB_TOBAC (Photosystem II CP47 reaction center protein OS=Nicotiana tabacum GN=psbB PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.0e-101
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHP+FRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 177
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]
BLAST of CmaCh05G009240 vs. Swiss-Prot
Match: PSBB_SOLTU (Photosystem II CP47 reaction center protein OS=Solanum tuberosum GN=psbB PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.0e-101
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHP+FRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 177
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]
BLAST of CmaCh05G009240 vs. TrEMBL
Match: A0A0S2IHD7_9ROSI (Photosystem II CP47 reaction center protein OS=Cucurbita pedatifolia GN=psbB PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.8e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]
BLAST of CmaCh05G009240 vs. TrEMBL
Match: A0A0S2IGW0_CUCPE (Photosystem II CP47 reaction center protein OS=Cucurbita pepo var. texana GN=psbB PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.8e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]
BLAST of CmaCh05G009240 vs. TrEMBL
Match: A0A0S2IDU7_9ROSI (Photosystem II CP47 reaction center protein OS=Cucurbita argyrosperma var. palmeri GN=psbB PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.8e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]
BLAST of CmaCh05G009240 vs. TrEMBL
Match: A0A0S2IGU8_CUCPE (Photosystem II CP47 reaction center protein OS=Cucurbita pepo subsp. fraterna GN=psbB PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.8e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]
BLAST of CmaCh05G009240 vs. TrEMBL
Match: A0A0S2IHI2_CUCPE (Photosystem II CP47 reaction center protein OS=Cucurbita pepo var. ozarkana GN=psbB PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.8e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]
BLAST of CmaCh05G009240 vs. TAIR10
Match: ATCG00680.1 (ATCG00680.1 photosystem II reaction center protein B)

HSP 1 Score: 366.7 bits (940), Expect = 9.9e-102
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPVFR+KEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRNKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 177
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]
BLAST of CmaCh05G009240 vs. NCBI nr
Match: gi|595645224|gb|AHM88687.1| (photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 370.2 bits (949), Expect = 2.5e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]
BLAST of CmaCh05G009240 vs. NCBI nr
Match: gi|346578217|ref|YP_004841809.1| (photosystem II CP47 chlorophyll apoprotein [Cucumis melo subsp. melo])

HSP 1 Score: 370.2 bits (949), Expect = 2.5e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]
BLAST of CmaCh05G009240 vs. NCBI nr
Match: gi|952954488|gb|ALO21850.1| (PsbB (plastid) [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 369.8 bits (948), Expect = 3.3e-99
Identity = 176/177 (99.44%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHP+FRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]
BLAST of CmaCh05G009240 vs. NCBI nr
Match: gi|156598717|gb|ABU85613.1| (photosystem II CP47 chlorophyll apoprotein [Scaevola aemula])

HSP 1 Score: 369.4 bits (947), Expect = 4.3e-99
Identity = 175/177 (98.87%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHP+FRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVT+EFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTIEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]
BLAST of CmaCh05G009240 vs. NCBI nr
Match: gi|917545364|gb|AKZ30707.1| (photosystem II 47 kDa protein (chloroplast) [Scaevola tomentosa])

HSP 1 Score: 369.4 bits (947), Expect = 4.3e-99
Identity = 175/177 (98.87%), Postives = 177/177 (100.00%), Query Frame = 1 

Query: 1   MDNGDGIAVGWLGHPVFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHP+FRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVT+EFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTIEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 178
           WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 450 WFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

The following BLAST results are available for this feature:
BLAST of CmaCh05G009240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBB_CUCSA4.6e-10199.44Photosystem II CP47 reaction center protein OS=Cucumis sativus GN=psbB PE=3 SV=1[more]
PSBB_SOLLC6.0e-10199.43Photosystem II CP47 reaction center protein OS=Solanum lycopersicum GN=psbB PE=3... [more]
PSBB_LEMMI6.0e-10199.43Photosystem II CP47 reaction center protein OS=Lemna minor GN=psbB PE=3 SV=1[more]
PSBB_TOBAC6.0e-10199.43Photosystem II CP47 reaction center protein OS=Nicotiana tabacum GN=psbB PE=3 SV... [more]
PSBB_SOLTU6.0e-10199.43Photosystem II CP47 reaction center protein OS=Solanum tuberosum GN=psbB PE=3 SV... [more]
BLAST of CmaCh05G009240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IHD7_9ROSI1.8e-99100.00Photosystem II CP47 reaction center protein OS=Cucurbita pedatifolia GN=psbB PE=... [more]
A0A0S2IGW0_CUCPE1.8e-99100.00Photosystem II CP47 reaction center protein OS=Cucurbita pepo var. texana GN=psb... [more]
A0A0S2IDU7_9ROSI1.8e-99100.00Photosystem II CP47 reaction center protein OS=Cucurbita argyrosperma var. palme... [more]
A0A0S2IGU8_CUCPE1.8e-99100.00Photosystem II CP47 reaction center protein OS=Cucurbita pepo subsp. fraterna GN... [more]
A0A0S2IHI2_CUCPE1.8e-99100.00Photosystem II CP47 reaction center protein OS=Cucurbita pepo var. ozarkana GN=p... [more]
BLAST of CmaCh05G009240 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00680.19.9e-10299.43ATCG00680.1 photosystem II reaction center protein B[more]
BLAST of CmaCh05G009240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|595645224|gb|AHM88687.1|2.5e-99100.00photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lagenaria siceraria][more]
gi|346578217|ref|YP_004841809.1|2.5e-99100.00photosystem II CP47 chlorophyll apoprotein [Cucumis melo subsp. melo][more]
gi|952954488|gb|ALO21850.1|3.3e-9999.44PsbB (plastid) [Cucurbita argyrosperma subsp. sororia][more]
gi|156598717|gb|ABU85613.1|4.3e-9998.87photosystem II CP47 chlorophyll apoprotein [Scaevola aemula][more]
gi|917545364|gb|AKZ30707.1|4.3e-9998.87photosystem II 47 kDa protein (chloroplast) [Scaevola tomentosa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000932PS_antenna-like
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0009521photosystem
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G009240.1CmaCh05G009240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 1..171
score: 1.4
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 1..159
score: 1.07
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 1..179
score: 2.3E
NoneNo IPR availablePANTHERPTHR33180:SF8SUBFAMILY NOT NAMEDcoord: 1..179
score: 2.3E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh05G009240Cucumber (Chinese Long) v3cmacucB0947
CmaCh05G009240Cucurbita maxima (Rimu)cmacmaB201
CmaCh05G009240Cucurbita moschata (Rifu)cmacmoB771
CmaCh05G009240Cucurbita moschata (Rifu)cmacmoB787
CmaCh05G009240Cucurbita moschata (Rifu)cmacmoB788
CmaCh05G009240Wild cucumber (PI 183967)cmacpiB813
CmaCh05G009240Cucumber (Chinese Long) v2cmacuB802
CmaCh05G009240Melon (DHL92) v3.5.1cmameB716
CmaCh05G009240Cucurbita pepo (Zucchini)cmacpeB767
CmaCh05G009240Cucurbita pepo (Zucchini)cmacpeB800
CmaCh05G009240Bottle gourd (USVL1VR-Ls)cmalsiB722
CmaCh05G009240Cucumber (Gy14) v2cgybcmaB693
CmaCh05G009240Melon (DHL92) v3.6.1cmamedB806
CmaCh05G009240Silver-seed gourdcarcmaB0174
CmaCh05G009240Silver-seed gourdcarcmaB1468