CmaCh05G008910 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G008910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribonuclease (RNase LC1)
Location	Cma_Chr05 : 6779078 .. 6786012 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATGTGTAGGAGGAATAAATTCTTTCACAATCCATGGCTTGTGGACTCAAAAGGAAAGAAATTCGGTAACTAACTGCGAGGACACCTCCTTTGTTCACCAAACTCAAACATTCATTTATTTTAGTTCAGTTTATTAGATTTACCAATTATAATTTAGGTTTGAATTATAATAGTTAAGGGTTAAAAAAATAATAATTTTCTTATTTCATATTGTTTTCATCTCTAAATCGTAGCTTGTACTAGTGAACCAATGGACCAAAGAAGAGGGATGTTAATTCAAGAACCCAATATTTTCATATTGGAAGCATTTCCATCTTTAGCAGGTCTGTTCCATGCTATTTTCATATTCAAATTGTAGCTGGTACAAATGAAACACTTGGATAAAATATTTCACAATAAATAGAGGTGCATAGTAACACAATAATTGACAATAGCTCCCACAACACTTTTCACCAGCCAATCCTAATCATACGAGTCTTCTCCTGTGTCATTTTGCTTCCAATAGCTAAATCACAGCTTTTTGACCACTCTTAGTTTGTCCAACAGTAGCGTTATAATTTTTGTGCTTTACAATCACAACAATGTGTAAGAGGAGGGATAAATTCCTTCACAATTCATGGCTTGTGGCTTCGAAAGGGAGAAAACTCGGTAACTAACTTTTGGGGCACATCCTTTGTTTATAAACAGGTAAAACTCAAACATTCATTCATTTTAGTTCAGTTTATTAGATGTACAAATTATAATTAGTTCATTATGTTTGGATTATAATAGTTAAGTGTGAAAAAAATCATAATTTGGTTGTTTCATGTTGTTTTCCTTTTCAAATTATAACTGAAGTGAACTAGTAGACCATATGAAGAGGGATGTTAATTACTGAATTGAATATTCTCCCGATTGTAAGCATTTTCATCTTTAGCAGGTCTGTTCCATGTTAGTTTTATCTTCAAATTGTTGCTTGTACAAGTGAAACACTTAGATCAAATGTTTCACAATAAATAGAGGTGTATAGTAATGTCATAACCGACAACAGCTCCCACAACACTTTTTACCATGCCAATCCCAATCACACGAATCTTCCCTTGTGTCATTTTGCTTCCAATAGCTAAATCACAGCTTTTTGACCACTCTTAGTTTGTCCAATAGTGGCGTTATAATTTTTGTGCTTTACAATCACAACAATGTGTAGGAGGAGGGATAAATTCCTTCACAATTCAAGGCTTGTGGCCTCAGAAGGGAGGAAACTCGGTAACTAACTTTCGGGACACCTCCTTTGTTTAGGTAAAACTCAAACATTCATTTATTTTAGTTCAGTTTATTAGATGTGCAAATTATAATTAATTTATTATGTTTAGATTATAATAGTTAAGGGTGAAAAAATAATAATTTTCTTGTTTCATGTTGTCTTTATCTTGAAATTGTAACTTGTACAAGTGAACGTGTAGACCAAAGAAGAGAAATGTTAATTCTTGAACTGAATAGTCTTTGGATTGCAAACATTTCCATCTTTAGCAGGTCTGTTCCATGTTATTTTCATCTTCAAGTGGGAGCTTGCATAAGTGAAACACTTAGATCAAATATTTCACAATAAATAGAGGTGCATAGTAACGCGATAATCGACAACATCTCCCATAACAACACTTTTCACCATGCCAATCCCAAACAAATAAGTCTTCCTGTGTTATTAAGCTTCCAATAACTAAATCACAACTTTTTGACCCACTCTTAGTTTGTCCAACAGTGGCCTTATATTTTTTGTGCATTACAATCGAGACAATGTGTAGGAGGAGGGATAAATTCCTTCACAATCCATGGCTTGTGGCCTCAGAAGAGTAGAAACTCGGTAACTAATTGCCGGGGCACCTCCTTTGTTTATAAATAGGTAAAACTCAAGAATTCATTTATTTTAGTTCAGTTTATTATACGTGCAGATTATAATTAGTTCATTATGTTTGAATTATTATAGTTAAGAGTGAAAAAAATAATAATTTTCTTGTTTCATTTGTTTTCATCCTCAAATTTCAAATGGTAGCTTGTACAAGTGAACTAGTAGACTAAAGAATAGAGATGTTAATTCCAGAATTGAATATTTTTCCCGTTGCAGCAAGCATTTCCATCTTTAGCATGTCTGTTTCAAGTTATTTTCATATTCAAATATTAACTTGTACAAGTGAAACACTTAGATCAAATATTTCATAAAAAATAAAGGTGCATAGTAACGCCATAATCGACAACAACTCCCACAACACTTTTCGCCATGTCAATCCCAAACACACGAGTCTTCTCCTGTGTCATTGTGCTTCCAATAGCTTTTTGACCACTTTTAGTTTATCCAGCAGTGGCCTTATAATTTTTGTGCTTTACAATCAGTTTAATGTGGAGGAGGGATAAATTCCGTCACAAAACATTGCTTGTGGCCTCAAAAGGGAAGAAACTCGGTAACTAATTGTTGGTCACCTCCTTTATTTATAAACAGGTAAATTTCAAACATTCATTTATTTTAGTTCAGATTATTAAATATGCAAATTATAATTAGTTCATCGTGTTTGGATTATAATAGTTCAGGGGTGAAAAAATCATAATTTTCTTGTTTCATGTTGTTTTCATATTGAAATTATAGCTTCTATAAGTGAATCAGTAGACCAAAGAAGAGTGATGTTAATTACAAAATTGAATATTCTTCAGGCAAGCATTTCATCTTTAACAGGTCTGTTCCATATTATTTTCATCTTCAAATTATAGCTTTTACGAGTGAAACACTTCAATCAAATATTTCACAATAAATAGAGGTGCATAGTAAAGCCATAATCGACAATAGCTCCTTCAACACTTTTCACTATGTCAATCCCAAACACACGAGTCTTACCCTGTGTCATTTTGCTTCCAATAGCTAAATCACAGCTTTTTGACCATTTTTAGTTTGTCAAACAGTGGCCTTATAATTTTTGTGCTTTACCATCATGACAATGTGTAGGAGGAGGGATAAATTCCTTCCCAATCCATGCCGAAGGGAAGAAACTTTGTAACTAACTGCCGAGGCTACACCTTCTTTGTTTATAAACAAATAAAACTCAAACATTAATCTACTTTAGTTCAGTTTATTAAATATGCAAATTATAATTAGTTCATTATGTTTGGATGATAAGAGTTAAGGGTAAAAAAAAAAAAAAATTCTTGTTTCATGTTGTTTTCATTTTTAAATTGTAGCTTGCACAATTAACCATAAAATGAAGGAGAGAGATGTTAATTACAGAACTGAAAATTCTTCATATTGCAATCATTTCCATTTTTAGCCGTTATTTTCATGTTATTTTAATCTTCAAATTGTAGCTTGTACAAGTAAAACACTTGATCAAATATTTCACAATAAATAGTAACGCCATAATTGACAATAGCTCCCACAACACTTTTCACCATGACAATCCCGAACACCCGAGTCTTTCCCTGTGTCATTTTGCTTCCAATAGCTAAATCACAGTTTTTTGACGACTTTTAGTTTGTCGAGCAGTGGCCTTCTGATTTTTGTGCTTTACAATCCGGACAATGTGTAGGAGGGATAAATTTCTTCATAATCTATGACTTATGGCCTCAGAAGGAAGAAACTCGATATCTAACTGTCGAGGCACTTCCTTTGTTTATAAACAGTTAAAACTCAAAAATTCATTTATGTTAGTTCAGTTTATTAGATGTACCGATTATAATTAGTTCATTATGTTTGAATTATAATAGTTAAGGGTGAAAAAAATAATAATTTTCTTGTTCATGTTGTTTTCATCTTCAAATTGTAGTTTGTAAGAGTGAACCCCTAGAACAAAGTAGAGGGATGTTAATTCCAGAACTAAATATTCTTTAGATTGCAAGCATTTCCATCTTTAGCATGTCTGTTTCATTTTCAAATTGTAACTTATACAAATGAAACACTTAGATCAAATATTTCACAATAAATAATAACGCCATAATCGACAACAGCTCCCACAACATTTTTCACCATGTCAATCCCATACACACGAGTCTTTCCCTGTGTCATTTTGCTCTAATAGCCAAATCATAACTTTTTTACCACTCTTAGTTTTTCCAGTAGTTGCCTTATAGTTTTTGTGCTTTTACAATAGGACAATGTGTAGAAGGAGGGATAAATTCCTTCACAATCCATGGCTTATGGCCTCAAAAGGGAAGAAACTCAGTAACTAACTACTGATGCACATCCATGGTTTGTAAAGGTAAAACTCAAACATTCATTTATTTAAGTTCAGTTGATTAGATGTGCAACTTATTATTAGTTTTTTATGTTTGGATTATAATAGTTTAGGGAAAAAAAATAATAATTTTCTTGTTTCATGTTGTTTTCATCTCCAAATTGTACCTTATACAAGTGAACTAGTAGATCAAAGGAGAGGGATATTAATTCCAGAACTGAATATTCTTACGATTTTAAGCATTTCCATTCTGTTTCATATTATTTTCATCTTCAAATTGTAGCTTGTACAAGTGAAACAATTAGATCAAATATTTTACCATAAATAGAGGTGCATAGTAACGCCATAATTGACAACATCTCCCACAACACTTTTCACAAGTCAATCCCAAACACACAGAGTCTTCCTCTGTGTCATTTTGCCTCCTAGCTAAATCACAACATTTTTCCCACTTTCAGTTTGTCTAGGAGTGGTCTTATAATTTTTGTGCGTTGCAATTAGGACAATGTGTAGGAGGGATAAATTCTTCACAATCCATGGCTTGTGGCAAAGAAACTCGGTAACTAACTATTGAGGCACCTCTTTTGTTTATAAACAGGTAAAACTCAAACATTCACATATTTTAGTTCAGTTTATTATATGTGCAAATTATAATTAATTCATTATGTTTGGATTATAATAGTTAAGGGTGAAAAAATAATAATTTTTTTGTTTCATGTTGTTTTAATCTACAAATTGTAGCTTGTACGAGTGAACCAGTAAATCAAAGAAGAGAGATTAATTACAGAACTCAATATTTTTGGGATTGCAATCATTTCCATATTTAGTAGGTTTGTTCCATGTTATTTTCATTTTTGTTATTTTCATTTTCAAATTGTACCTGGTACAAGTGAAACGCTTATCAAATATTTCCCAATAAATAGAGGTGCATAGTTTAATCGACAACAGCTCCCACAACACTTTTAACCATGTCAATCCCAAACACACGAGTCTTCCCCTTTTCATTTTTTCCTCCCATAGCTAAATCACAGCCTTTTGACCACTTTTAATTTGTCCAGTAGTGGCCTTATAATTTTTTTGCTTTTCAATCTCGACAATATGTAGGAAGAGGGATAAATTCCTTCACAATCCATGGCTTGTGGCCTCAAAAGGGAAGAAACTAGGTAAGTAACTGTCGGGGCACCTCCTTTGTTTATAAACATGTAAAACTCAAACATTCACTTATTTTCGTTTAGTTTATTAGATGTCCAAGTTATAATTAGTTCATTATGTTTGGATTATAATAGTTAATGGTGAAAAAAATAATAATTTTCTTGTTTCATATTGTTTTATCTTCTAATTGTAACTTGTACAAGTGAACCAGTAGACCAAAGGAGAGGATGTTAATTCTAGAACTCAATATTCTTCATATTGCAAGCATTAACATCTTTAGCAAGTTTGTTTCATGTTATTTTCATCTTCTAATTGTAGTTTAGACAAGTGAAACACGTAGATCAAATATTTCACAATAAATAAAGGTGCATAGTAACGCCATAATCGATAACATCTCCCACAACACTTTTCACTACGTCAATCCCAAACACACAGAGTCTTCCCTTTGTCATTTTGCCTCCTAGCTAAATCACAACTTTTTGACCACTCTTAATTTGTCTAGTAGTGACCATATAATTTTTGTGCTCTACAATCAGGACAATGTGCAGGAGGGATAAATTCCTTCACAATCCATGTATTGTGGCCTCAGAAGGGAAGAAACTCAGTAACTAACTACCGGAACACCTCCTTTGTTTATAAACAGGTAAAACTCAAACATTAATTTATTTTAGTTCAGTTTATTAGAGGTGCAAATCATAATTAGTTCATTATGTTTGGATTATAATAGTTAAGGGTGAAAAAAATAATAATTTTTATTCTTTCATGTTGTTTTCCTCCTCAAATGTTGTTTATAAGTGAACCAATAGACCAAAGAATAGGGATATTAATTCCGTAACTCAATATTCTTCCGATTGCAAGCATTTTTATGTCTGTTTCATGTTATTTTTATCTTCAAAGTGTAGCTGGTACAAGTAAAACACTTAGATAAAATATTTTACAATAAATAGAGGTGCATTGTAACATCCTTTTCACCATGCCAATCCCAAACACACGTCTTCCTCTTGTTTGCTGGTGTCATTTTGCTTTCAATAGCTAAATCACAGCTTTTTAACCACTTTCAATTTGTCCAGTAGCGGTCTTATAATTTTTGTGCATTGCAATCAGGACAATGTGTAAGAGGAGGGATAAATTCCTTTGCAATTCATGGCTTGTGGCCTAAGAAGGGAAGAAACTCGATAACTAAGTGTCGAGGCACCTTCTTTGTTTATAAACAGGTAAAACTCAAATATTCATTTATTTTAGTTCATTAGAGGTGCAAATTATAACTAGTTCATTATGTTTGGATTTCAGGTTTTGCATTTAGAAAACAATTTTAACCTAGTTTGGCCAGATCTTATCCAGAAAAAGAACCAATGGTTTTGGACTCATGAATGGAAAAAACGTGGGATTTACTCAAAAAGCAAATTCGACGAGTTAGCTAGCCTTCTTCCAAACATCCATAAATTTGAGGCACTAAGGGCCCTAGTAAATCAAGGAATAATTTAAGACAGGGCCTCCAAGTCAAAGCAAAGTGTGGACAACATCGTCATAAAGAATTTCAAGAAAATCCTGTTCTTCGTTGTCAAAAAGCATCCAATAGCCAAGTTCTA

mRNA sequence

CAATGTGTAGGAGGAATAAATTCTTTCACAATCCATGGCTTGTGGACTCAAAAGGAAAGAAATTCGTGGCGTTATAATTTTTGTGCTTTACAATCACAACAATGTGTAGGAGGAGGGATAAATTCCTTCACAATTCAAGGCTTGTGGCCTCAGAAGGGAGGAAACTCGTTTGTCCAACAGTGGCCTTATATTTTTTGTGCATTACAATCGAGACAATGTGTAGGAGGAGGGATAAATTCCTTCACAATCCATGGCTTGTGGCCTCAGAAGAGTAGAAACTCGGTGCATAGTAACGCCATAATCGACAACAACTCCCACAACACTTTTCGCCATGTCAATCCCAAACACACGAGTCTTCTCCTTTTAATGTGGAGGAGGGATAAATTCCGTCACAAAACATTGCTTGTGGCCTCAAAAGGGAAGAAACTCGGCAAGCATTTCATCTTTAACAGGTCTGTTCCATATTATTTTCATCTTCAAATTATAGCTTTTACGAAGGTGCATAGTAAAGCCATAATCGACAATAGCTCCTTCAACACTTTTCACTATGTCAATCCCAAACACACGACTTGCACAATTAACCATAAAATGAAGGAGAGAGATCTTGTACAAGTAAAACACTTGATCAAATATTTCACAATAAATAGTAACGCCATAATTGACAATAGCTCCCACAACACTTTTCACCATGACAATCCCGAACACCCGAGTCTTTCCCTTTTGTCGAGCAGTGGCCTTCTGATTTTTGTGCTTTACAATCCGGACAATGTGAAGAGGGATAAATTCCTTCACAATCCATGGCTTGTGGCCTCAAAAGGGAAGAAACTAGGACAATGTGTAAGAGGAGGGATAAATTCCTTTGCAATTCATGGCTTGTGGCCTAAGAAGGGAAGAAACTCGATAACTAAGTGTCGAGGCACCTTCTTTGTTTATAAACAGGTTTTGCATTTAGAAAACAATTTTAACCTAGTTTGGCCAGATCTTATCCAGAAAAAGAACCAATGGTTTTGGACTCATGAATGGAAAAAACGTGGGATTTACTCAAAAAGCAAATTCGACGAGTTAGCTAGCCTTCTTCCAAACATCCATAAATTTGAGGCACTAAGGGCCCTAGGCCTCCAAGTCAAAGCAAAGTGTGGACAACATCGTCATAAAGAATTTCAAGAAAATCCTGTTCTTCGTTGTCAAAAAGCATCCAATAGCCAAGTTCTA

Coding sequence (CDS)

CAATGTGTAGGAGGAATAAATTCTTTCACAATCCATGGCTTGTGGACTCAAAAGGAAAGAAATTCGTGGCGTTATAATTTTTGTGCTTTACAATCACAACAATGTGTAGGAGGAGGGATAAATTCCTTCACAATTCAAGGCTTGTGGCCTCAGAAGGGAGGAAACTCGTTTGTCCAACAGTGGCCTTATATTTTTTGTGCATTACAATCGAGACAATGTGTAGGAGGAGGGATAAATTCCTTCACAATCCATGGCTTGTGGCCTCAGAAGAGTAGAAACTCGGTGCATAGTAACGCCATAATCGACAACAACTCCCACAACACTTTTCGCCATGTCAATCCCAAACACACGAGTCTTCTCCTTTTAATGTGGAGGAGGGATAAATTCCGTCACAAAACATTGCTTGTGGCCTCAAAAGGGAAGAAACTCGGCAAGCATTTCATCTTTAACAGGTCTGTTCCATATTATTTTCATCTTCAAATTATAGCTTTTACGAAGGTGCATAGTAAAGCCATAATCGACAATAGCTCCTTCAACACTTTTCACTATGTCAATCCCAAACACACGACTTGCACAATTAACCATAAAATGAAGGAGAGAGATCTTGTACAAGTAAAACACTTGATCAAATATTTCACAATAAATAGTAACGCCATAATTGACAATAGCTCCCACAACACTTTTCACCATGACAATCCCGAACACCCGAGTCTTTCCCTTTTGTCGAGCAGTGGCCTTCTGATTTTTGTGCTTTACAATCCGGACAATGTGAAGAGGGATAAATTCCTTCACAATCCATGGCTTGTGGCCTCAAAAGGGAAGAAACTAGGACAATGTGTAAGAGGAGGGATAAATTCCTTTGCAATTCATGGCTTGTGGCCTAAGAAGGGAAGAAACTCGATAACTAAGTGTCGAGGCACCTTCTTTGTTTATAAACAGGTTTTGCATTTAGAAAACAATTTTAACCTAGTTTGGCCAGATCTTATCCAGAAAAAGAACCAATGGTTTTGGACTCATGAATGGAAAAAACGTGGGATTTACTCAAAAAGCAAATTCGACGAGTTAGCTAGCCTTCTTCCAAACATCCATAAATTTGAGGCACTAAGGGCCCTAGGCCTCCAAGTCAAAGCAAAGTGTGGACAACATCGTCATAAAGAATTTCAAGAAAATCCTGTTCTTCGTTGTCAAAAAGCATCCAATAGCCAAGTTCTA

Protein sequence

QCVGGINSFTIHGLWTQKERNSWRYNFCALQSQQCVGGGINSFTIQGLWPQKGGNSFVQQWPYIFCALQSRQCVGGGINSFTIHGLWPQKSRNSVHSNAIIDNNSHNTFRHVNPKHTSLLLLMWRRDKFRHKTLLVASKGKKLGKHFIFNRSVPYYFHLQIIAFTKVHSKAIIDNSSFNTFHYVNPKHTTCTINHKMKERDLVQVKHLIKYFTINSNAIIDNSSHNTFHHDNPEHPSLSLLSSSGLLIFVLYNPDNVKRDKFLHNPWLVASKGKKLGQCVRGGINSFAIHGLWPKKGRNSITKCRGTFFVYKQVLHLENNFNLVWPDLIQKKNQWFWTHEWKKRGIYSKSKFDELASLLPNIHKFEALRALGLQVKAKCGQHRHKEFQENPVLRCQKASNSQVL

Homology

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BLAST of CmaCh05G008910 vs. Swiss-Prot
Match: RNMC_MOMCH (Ribonuclease MC OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-15
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 1


Query: 274 KKLGQCVRGGINSFAIHGLWPKKGRNSITKC-RGTFFVYKQVLHLENNFNLVWPDLIQKK 333
           +K G C   G+ +F IHGLWP+    S+T C +G+ F   ++ HL++  N +WP++++  
Sbjct: 18  QKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKISHLQSQLNTLWPNVLRAN 77

Query: 334 NQWFWTHEWKKRGIYSKSKFDELA 357
           NQ FW+HEW K G  S+S F++ A
Sbjct: 78  NQQFWSHEWTKHGTCSESTFNQAA 101

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BLAST of CmaCh05G008910 vs. Swiss-Prot
Match: RNS3_PETHY (Ribonuclease S-3 OS=Petunia hybrida GN=S3 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-06
Identity = 42/130 (32.31%), Postives = 62/130 (47.69%), Query Frame = 1


Query: 238 LSLLSSSGLLIFVLYNPDNVKRDKFLHNPWLVASKGKKLGQCVRGGINSFAIHGLWPKKG 297
           L L+S+  +L+F L +P +   D F       AS      +C R   N+F IHGLWP+K 
Sbjct: 4   LQLISAFFILLFSL-SPVSANFDYFQLVLTWPASFCYPKNKCQRRS-NNFTIHGLWPEKK 63

Query: 298 RNSITKCRGTFFVYKQVLHLENNFNLVWPDLIQKK--------NQWFWTHEWKKRGIYSK 357
           R  +  C G    YK+ L  +N  N++    IQ +         Q  W HE+ + GI  K
Sbjct: 64  RFRLEFCTGD--KYKRFLEEDNIINVLERHWIQMRFDETYANTKQPLWEHEYNRHGICCK 123

Query: 358 SKFDELASLL 360
           + +D+ A  L
Sbjct: 124 NLYDQKAYFL 129

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BLAST of CmaCh05G008910 vs. TrEMBL
Match: A0A0A0LC37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825050 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 277 GQCVRGGINSFAIHGLWPKKGRNSITKCRGTFFVYKQVLHLENNFNLVWPDLIQKKNQWF 336
           G+CV  G  SF IHGLWP+KG  S+T C G  F + ++ HLEN+ N+VWP+++   N++F
Sbjct: 47  GRCVGRGTRSFTIHGLWPQKGGRSVTNCTGNQFDFTKIAHLENDLNVVWPNVVTGNNKFF 106

Query: 337 WTHEWKKRGIYSKSKFDE------LASLLPNIHKFEALRALGL------QVKAKCGQHRH 396
           W HEW K GI S+SKFDE        ++   I     LR  G+      + K +      
Sbjct: 107 WGHEWNKHGICSESKFDEAKYFQTAINMRHGIDLLSVLRTGGVGPNGASKAKQRVETAIS 166

Query: 397 KEFQENPVLRCQKASNSQVL 405
             F ++P+LRC+KASN QVL
Sbjct: 167 SHFGKDPILRCKKASNGQVL 186

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BLAST of CmaCh05G008910 vs. TrEMBL
Match: Q40115_LUFAE (Ribonuclease (RNase LC1) OS=Luffa aegyptiaca PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.4e-19
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 1


Query: 267 WLVASKGKKLGQCVRGGINSFAIHGLWPKKGRNSITKCRGTFFVYKQVLHLENNFNLVWP 326
           W  A    + G+CV  G+ SF IHG+WP+KG  S+  C G  F + ++ HLE+  N+ WP
Sbjct: 35  WPPAVCSFQQGRCVGQGLRSFTIHGVWPQKGGTSVINCPGPTFDFTKISHLESTLNVDWP 94

Query: 327 DLIQKKNQWFWTHEWKKRGIYSKSKFDELA------SLLPNIHKFEALRALGL------Q 386
           ++I   N+WFW HEW K GI S SKFD+ A      ++  +I    ALR  G+      +
Sbjct: 95  NVITGNNKWFWGHEWNKHGICSVSKFDQQAYFQMAINMRNSIDLLSALRVGGVVPNGRSK 154

Query: 387 VKAKCGQHRHKEFQENPVLRCQ 397
            + +       +  + PVLRC+
Sbjct: 155 ARQRVQSAIRAQLGKEPVLRCR 176

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BLAST of CmaCh05G008910 vs. TrEMBL
Match: A0A0A0LHQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825060 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.6e-15
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 1


Query: 260 DKFLH-NPWLVASKGKKLGQCVRGGINSFAIHGLWPKKGRNSITKCRGTFFVYKQVLHLE 319
           DKF     W  A    + G+CV  G+  F IHG+WP+KG  S+  C GT F + ++  L 
Sbjct: 33  DKFYFVQQWPPAVCDGRTGKCVGKGMYYFTIHGVWPQKGGKSVINCPGTQFDFNKISSLA 92

Query: 320 NNFNLVWPDLIQKKNQWFWTHEWKKRGIYSKSK------FDELASLLPNIHKFEALRALG 379
           N  + +  D+I   +Q+ W+HEW K G+ S+S+      F    ++   I+   ALR  G
Sbjct: 93  NTLHQIMKDVINADDQFLWSHEWNKHGVCSESRYSMKQYFQMAINMKYKINVLSALRMGG 152

Query: 380 ------LQVKAKCGQHRHKEFQENPVLRCQKASNSQVL 405
                 L+ K +        +   P+LRC+K S+ Q L
Sbjct: 153 ITPNNHLKAKQRVEGAMFTAYNAYPLLRCKKDSSGQSL 190

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BLAST of CmaCh05G008910 vs. TrEMBL
Match: Q40116_LUFAE (Ribonuclease (RNase LC2) OS=Luffa aegyptiaca PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 55/172 (31.98%), Postives = 86/172 (50.00%), Query Frame = 1


Query: 240 LLSSSGLLIFVLY-NPDNVKRDKFLH-NPWLVASKGKKLGQCVRGGINSFAIHGLWPKKG 299
           LL++  LL+ +L+   ++   D F     W   +  ++   C +    +F IHGLWP+KG
Sbjct: 7   LLATIVLLLTILFLGAESQTFDHFFFVQQWPPTTCQQQQKPCFQPPPATFKIHGLWPQKG 66

Query: 300 RNSITKCRGTFFVYKQVLHLENNFNLVWPDLIQKKNQWFWTHEWKKRGIYSKSKFDE--- 359
            NS+  C   F    Q+  LEN  ++VWPD++   N  FW HEW K G  S+S+F++   
Sbjct: 67  PNSVVYCNKNFD-RTQISSLENQLDVVWPDVVTGNNTGFWEHEWNKHGSCSESQFNQTLY 126

Query: 360 LASLLPNIHKFEALRALG-----LQVKAKCGQHRHK----EFQENPVLRCQK 398
             + +  ++K   L+ALG        + K  Q   K    +F   P LRC+K
Sbjct: 127 FQTAINMMNKVNLLKALGKGGITSDERTKSSQTMQKVLLAQFGNQPFLRCKK 177

[Close]

BLAST of CmaCh05G008910 vs. TrEMBL
Match: A0A0A0LAN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745530 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-07
Identity = 36/106 (33.96%), Postives = 47/106 (44.34%), Query Frame = 1


Query: 269 VASKGKKLGQCVRGGINSFAIHGLWPKKGRNSITKCRGTFFVYKQVLHLENNFNLVWPDL 328
           V + G ++  C       F IHGLWP    N+   C+    +Y +V+ LE   N+ WPDL
Sbjct: 36  VCNTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLCQSKT-IYSKVISLEGQLNISWPDL 95

Query: 329 IQKKNQWFWTHEWKKRGIYSK---SKFDELASLLPNIHKFEALRAL 372
               N  FW HEW   G  S    S F      L  + KF+ L  L
Sbjct: 96  KYGNNDKFWGHEWDTHGKCSDPPFSLFQYFQISLNLLRKFDLLTIL 140

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BLAST of CmaCh05G008910 vs. NCBI nr
Match: gi|449459530|ref|XP_004147499.1| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 5.0e-24
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 277 GQCVRGGINSFAIHGLWPKKGRNSITKCRGTFFVYKQVLHLENNFNLVWPDLIQKKNQWF 336
           G+CV  G  SF IHGLWP+KG  S+T C G  F + ++ HLEN+ N+VWP+++   N++F
Sbjct: 47  GRCVGRGTRSFTIHGLWPQKGGRSVTNCTGNQFDFTKIAHLENDLNVVWPNVVTGNNKFF 106

Query: 337 WTHEWKKRGIYSKSKFDE------LASLLPNIHKFEALRALGL------QVKAKCGQHRH 396
           W HEW K GI S+SKFDE        ++   I     LR  G+      + K +      
Sbjct: 107 WGHEWNKHGICSESKFDEAKYFQTAINMRHGIDLLSVLRTGGVGPNGASKAKQRVETAIS 166

Query: 397 KEFQENPVLRCQKASNSQVL 405
             F ++P+LRC+KASN QVL
Sbjct: 167 SHFGKDPILRCKKASNGQVL 186

[Close]

BLAST of CmaCh05G008910 vs. NCBI nr
Match: gi|659085407|ref|XP_008443402.1| (PREDICTED: ribonuclease MC-like [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 7.2e-23
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 277 GQCVRGGINSFAIHGLWPKKGRNSITKCRGTFFVYKQVLHLENNFNLVWPDLIQKKNQWF 336
           G+CV  G  SF IHGLWP+KG  S+T C G  F + ++ HLE++ N+VWP+++   N++F
Sbjct: 46  GRCVGRGTRSFTIHGLWPQKGGRSVTNCSGNSFDFTKIAHLESDLNVVWPNVVTGNNKFF 105

Query: 337 WTHEWKKRGIYSKSKFDE------LASLLPNIHKFEALRALGL------QVKAKCGQHRH 396
           W HEW K GI S+SKFD+        ++  +I     LR  G+      + K +      
Sbjct: 106 WGHEWNKHGICSESKFDQAKYFQTAINMRHSIDLLSVLRTGGIVPNGASKAKQRVETAIS 165

Query: 397 KEFQENPVLRCQKASNSQVL 405
             F ++P+LRC+ ASN QVL
Sbjct: 166 SHFAKDPILRCKTASNGQVL 185

[Close]

BLAST of CmaCh05G008910 vs. NCBI nr
Match: gi|976231|dbj|BAA10891.1| (ribonuclease (RNase LC1) [Luffa aegyptiaca])

HSP 1 Score: 104.4 bits (259), Expect = 4.8e-19
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 1


Query: 267 WLVASKGKKLGQCVRGGINSFAIHGLWPKKGRNSITKCRGTFFVYKQVLHLENNFNLVWP 326
           W  A    + G+CV  G+ SF IHG+WP+KG  S+  C G  F + ++ HLE+  N+ WP
Sbjct: 35  WPPAVCSFQQGRCVGQGLRSFTIHGVWPQKGGTSVINCPGPTFDFTKISHLESTLNVDWP 94

Query: 327 DLIQKKNQWFWTHEWKKRGIYSKSKFDELA------SLLPNIHKFEALRALGL------Q 386
           ++I   N+WFW HEW K GI S SKFD+ A      ++  +I    ALR  G+      +
Sbjct: 95  NVITGNNKWFWGHEWNKHGICSVSKFDQQAYFQMAINMRNSIDLLSALRVGGVVPNGRSK 154

Query: 387 VKAKCGQHRHKEFQENPVLRCQ 397
            + +       +  + PVLRC+
Sbjct: 155 ARQRVQSAIRAQLGKEPVLRCR 176

[Close]

BLAST of CmaCh05G008910 vs. NCBI nr
Match: gi|55670412|pdb|1V9H|A (Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex With 5'-Ump)

HSP 1 Score: 90.1 bits (222), Expect = 9.4e-15
Identity = 43/142 (30.28%), Postives = 77/142 (54.23%), Query Frame = 1


Query: 274 KKLGQCVRGGINSFAIHGLWPKKGRNSITKCRGTFFVYKQVLHLENNFNLVWPDLIQKKN 333
           +K G C   G+ +F IHGLWP++   S+T C G+ F   ++ HL++  N +WP++++  N
Sbjct: 25  QKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHLQSQLNTLWPNVLRANN 84

Query: 334 QWFWTHEWKKRGIYSKSKFDELASLLPNI---HKFEALRALGLQVKAKCGQHRHKE---- 393
           Q FW+HEW K G  S+S F++ A+    +   + ++ + AL        G+ + ++    
Sbjct: 85  QQFWSHEWTKHGTCSESTFNQAAAFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKG 144

Query: 394 -----FQENPVLRCQKASNSQV 404
                F + P LRC+    ++V
Sbjct: 145 FLKAKFGKFPGLRCRTDPQTKV 166

[Close]

BLAST of CmaCh05G008910 vs. NCBI nr
Match: gi|700204428|gb|KGN59561.1| (hypothetical protein Csa_3G825060 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-14
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 1


Query: 260 DKFLH-NPWLVASKGKKLGQCVRGGINSFAIHGLWPKKGRNSITKCRGTFFVYKQVLHLE 319
           DKF     W  A    + G+CV  G+  F IHG+WP+KG  S+  C GT F + ++  L 
Sbjct: 33  DKFYFVQQWPPAVCDGRTGKCVGKGMYYFTIHGVWPQKGGKSVINCPGTQFDFNKISSLA 92

Query: 320 NNFNLVWPDLIQKKNQWFWTHEWKKRGIYSKSK------FDELASLLPNIHKFEALRALG 379
           N  + +  D+I   +Q+ W+HEW K G+ S+S+      F    ++   I+   ALR  G
Sbjct: 93  NTLHQIMKDVINADDQFLWSHEWNKHGVCSESRYSMKQYFQMAINMKYKINVLSALRMGG 152

Query: 380 ------LQVKAKCGQHRHKEFQENPVLRCQKASNSQVL 405
                 L+ K +        +   P+LRC+K S+ Q L
Sbjct: 153 ITPNNHLKAKQRVEGAMFTAYNAYPLLRCKKDSSGQSL 190

The following BLAST results are available for this feature:

BLAST of CmaCh05G008910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNMC_MOMCH	2.5e-15	40.48	Ribonuclease MC OS=Momordica charantia PE=1 SV=1	[more]
RNS3_PETHY	1.2e-06	32.31	Ribonuclease S-3 OS=Petunia hybrida GN=S3 PE=3 SV=1	[more]

BLAST of CmaCh05G008910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC37_CUCSA	3.5e-24	42.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825050 PE=3 SV=1	[more]
Q40115_LUFAE	3.4e-19	36.62	Ribonuclease (RNase LC1) OS=Luffa aegyptiaca PE=2 SV=1	[more]
A0A0A0LHQ9_CUCSA	8.6e-15	32.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825060 PE=3 SV=1	[more]
Q40116_LUFAE	3.3e-14	31.98	Ribonuclease (RNase LC2) OS=Luffa aegyptiaca PE=2 SV=1	[more]
A0A0A0LAN6_CUCSA	3.0e-07	33.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745530 PE=3 SV=1	[more]

BLAST of CmaCh05G008910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh05G008910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459530\|ref\|XP_004147499.1\|	5.0e-24	42.14	PREDICTED: ribonuclease MC-like [Cucumis sativus]	[more]
gi\|659085407\|ref\|XP_008443402.1\|	7.2e-23	40.00	PREDICTED: ribonuclease MC-like [Cucumis melo]	[more]
gi\|976231\|dbj\|BAA10891.1\|	4.8e-19	36.62	ribonuclease (RNase LC1) [Luffa aegyptiaca]	[more]
gi\|55670412\|pdb\|1V9H\|A	9.4e-15	30.28	Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex With 5'-Ump	[more]
gi\|700204428\|gb\|KGN59561.1\|	1.2e-14	32.28	hypothetical protein Csa_3G825060 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001568	RNase_T2-like
IPR018188	RNase_T2_His_AS_1

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0033897	ribonuclease T2 activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G008910.1	CmaCh05G008910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	GENE3D	G3DSA:3.90.730.10		coord: 7..26 score: 3.9E-4coord: 27..55 score: 6.0E-5coord: 57..124 score: 2.3E-9coord: 277..397 score: 1.1
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 57..100 score: 2.5E-6coord: 281..350 score: 6.7
IPR001568	Ribonuclease T2-like	unknown	SSF55895	Ribonuclease Rh-like	coord: 22..55 score: 1.26E-7coord: 57..126 score: 6.15E-12coord: 275..351 score: 6.02
IPR018188	Ribonuclease T2, His active site 1	PROSITE	PS00530	RNASE_T2_1	coord: 81..88 score: -coord: 287..294 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G008910	CmoCh05G008950	Cucurbita moschata (Rifu)	cmacmoB787

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G008910	Watermelon (97103) v2	cmawmbB804
CmaCh05G008910	Watermelon (97103) v2	cmawmbB833
CmaCh05G008910	Wax gourd	cmawgoB0931
CmaCh05G008910	Cucurbita maxima (Rimu)	cmacmaB197
CmaCh05G008910	Cucumber (Gy14) v1	cgycmaB0016
CmaCh05G008910	Cucurbita moschata (Rifu)	cmacmoB771
CmaCh05G008910	Wild cucumber (PI 183967)	cmacpiB813
CmaCh05G008910	Wild cucumber (PI 183967)	cmacpiB815
CmaCh05G008910	Cucumber (Chinese Long) v2	cmacuB802
CmaCh05G008910	Cucumber (Chinese Long) v2	cmacuB804
CmaCh05G008910	Melon (DHL92) v3.5.1	cmameB715
CmaCh05G008910	Melon (DHL92) v3.5.1	cmameB716
CmaCh05G008910	Watermelon (Charleston Gray)	cmawcgB685
CmaCh05G008910	Watermelon (97103) v1	cmawmB749
CmaCh05G008910	Cucurbita pepo (Zucchini)	cmacpeB800
CmaCh05G008910	Bottle gourd (USVL1VR-Ls)	cmalsiB722
CmaCh05G008910	Cucumber (Gy14) v2	cgybcmaB693
CmaCh05G008910	Melon (DHL92) v3.6.1	cmamedB806
CmaCh05G008910	Melon (DHL92) v3.6.1	cmamedB805
CmaCh05G008910	Silver-seed gourd	carcmaB0445
CmaCh05G008910	Cucumber (Chinese Long) v3	cmacucB0949
CmaCh05G008910	Cucumber (Chinese Long) v3	cmacucB0947