CmaCh05G008830 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G008830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cytochrome b reductase 1
Location	Cma_Chr05 : 6466500 .. 6466999 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGGGCTAAGCGATCTGTCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCATTCCGCCTTAGAGGGAAGCACCCGCGAGAGCAGTGGTGGACGAAGCAGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTAGTGAGAATCGAATGCCATGAAAACCTAAGGGTTCCTATGCAAGGTTCGTCCACGGAGGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTGGACAGTGATCCATCCAGTACTACCCCTTGTTGGTCTCGAGGGAAAGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCAAGGTGTGTTTTTTCAAGGTAAGAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCAAACGACCTTCAACAAAAGGGTACTGGTATCCGAAACTGACACTGGTGGATAG

mRNA sequence

ATGAACGGGGCTAAGCGATCTGTCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCATTCCGCCTTAGAGGGAAGCACCCGCGAGAGCAGTGGTGGACGAAGCAGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTAGGCCTAAGATCAGGCCGAAAGGCGTAGTGGACAGTGATCCATCCAGTACTACCCCTTGTTGGTCTCGAGGGAAAGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCAAGGTGTGTTTTTTCAAGGTAAGAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCAAACGACCTTCAACAAAAGGGTACTGGTATCCGAAACTGACACTGGTGGATAG

Coding sequence (CDS)

ATGAACGGGGCTAAGCGATCTGTCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCATTCCGCCTTAGAGGGAAGCACCCGCGAGAGCAGTGGTGGACGAAGCAGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTAGGCCTAAGATCAGGCCGAAAGGCGTAGTGGACAGTGATCCATCCAGTACTACCCCTTGTTGGTCTCGAGGGAAAGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCAAGGTGTGTTTTTTCAAGGTAAGAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCAAACGACCTTCAACAAAAGGGTACTGGTATCCGAAACTGACACTGGTGGATAG

Protein sequence

MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDSDPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHAILPGKAQTTFNKRVLVSETDTGG

Homology

[Close]

BLAST of CmaCh05G008830 vs. TrEMBL
Match: A0A067L301_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00471 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-29
Identity = 85/142 (59.86%), Postives = 91/142 (64.08%), Query Frame = 1


Query: 1   MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDS 60
           MNGAKRS EAVGC+NASVGE SALEGSTR S GGRS SENVGLSNANI     P+     
Sbjct: 29  MNGAKRSAEAVGCKNASVGERSALEGSTRASRGGRSGSENVGLSNANIGENPMPR----- 88

Query: 61  DPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHA 120
            P  ++  + RG                        RRGREN SSQCSSTRRYG EVTHA
Sbjct: 89  KPKGSSARFVRGGV----------------------RRGRENASSQCSSTRRYGTEVTHA 143

Query: 121 ILPGKAQTTFNKRVLVSETDTG 143
           IL GKA+TTFNKRV V ETD G
Sbjct: 149 ILSGKARTTFNKRVPVPETDIG 143

[Close]

BLAST of CmaCh05G008830 vs. TrEMBL
Match: A0A151RN55_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_034569 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.8e-26
Identity = 83/143 (58.04%), Postives = 88/143 (61.54%), Query Frame = 1


Query: 1   MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDS 60
           MNGAKRS EAVGC+N SVGE SALEG T  SSGGRS SENVGLSNAN          V  
Sbjct: 29  MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNAN----------VGE 88

Query: 61  DPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHA 120
           +P    P  S  +           V G  +       RGREN SSQ SSTRRY AEV HA
Sbjct: 89  NPMPRKPKGSSAR----------FVHGGVI-------RGRENASSQSSSTRRYSAEVIHA 144

Query: 121 ILPGKAQTTFNKRVLVSETDTGG 144
           ILPGKA+TTFNK V V ETDTGG
Sbjct: 149 ILPGKARTTFNKWVPVPETDTGG 144

[Close]

BLAST of CmaCh05G008830 vs. TrEMBL
Match: A0A0D2ZTA2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-26
Identity = 78/133 (58.65%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 1   MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDS 60
           MNGAKRS EAVGCQNASVGE SAL GS R S GGRS SENVGLSNANI     P+     
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPR----- 60

Query: 61  DPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHA 120
            P  ++  +  G                        RRGREN  SQCSSTRRYGAEVTHA
Sbjct: 61  KPKGSSARFVHGGV----------------------RRGRENAPSQCSSTRRYGAEVTHA 106

Query: 121 ILPGKAQTTFNKR 134
           ILPGKA+TTFNKR
Sbjct: 121 ILPGKARTTFNKR 106

[Close]

BLAST of CmaCh05G008830 vs. TrEMBL
Match: A0A078J910_BRANA (BnaUnng00830D protein OS=Brassica napus GN=BnaUnng00830D PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-26
Identity = 78/133 (58.65%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 1   MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDS 60
           MNGAKRS EAVGCQNASVGE SAL GS R S GGRS SENVGLSNANI     P+     
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPR----- 60

Query: 61  DPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHA 120
            P  ++  +  G                        RRGREN  SQCSSTRRYGAEVTHA
Sbjct: 61  KPKGSSARFVHGGV----------------------RRGRENAPSQCSSTRRYGAEVTHA 106

Query: 121 ILPGKAQTTFNKR 134
           ILPGKA+TTFNKR
Sbjct: 121 ILPGKARTTFNKR 106

[Close]

BLAST of CmaCh05G008830 vs. TrEMBL
Match: A0A078G2W9_BRANA (BnaC09g29220D protein OS=Brassica napus GN=BnaC09g29220D PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-26
Identity = 78/133 (58.65%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 1   MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDS 60
           MNGAKRS EAVGCQNASVGE SAL GS R S GGRS SENVGLSNANI     P+     
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPR----- 60

Query: 61  DPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHA 120
            P  ++  +  G                        RRGREN  SQCSSTRRYGAEVTHA
Sbjct: 61  KPKGSSARFVHGGV----------------------RRGRENAPSQCSSTRRYGAEVTHA 106

Query: 121 ILPGKAQTTFNKR 134
           ILPGKA+TTFNKR
Sbjct: 121 ILPGKARTTFNKR 106

[Close]

BLAST of CmaCh05G008830 vs. NCBI nr
Match: gi|643736466|gb|KDP42772.1| (hypothetical protein JCGZ_00471 [Jatropha curcas])

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-29
Identity = 85/142 (59.86%), Postives = 91/142 (64.08%), Query Frame = 1


Query: 1   MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDS 60
           MNGAKRS EAVGC+NASVGE SALEGSTR S GGRS SENVGLSNANI     P+     
Sbjct: 29  MNGAKRSAEAVGCKNASVGERSALEGSTRASRGGRSGSENVGLSNANIGENPMPR----- 88

Query: 61  DPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHA 120
            P  ++  + RG                        RRGREN SSQCSSTRRYG EVTHA
Sbjct: 89  KPKGSSARFVRGGV----------------------RRGRENASSQCSSTRRYGTEVTHA 143

Query: 121 ILPGKAQTTFNKRVLVSETDTG 143
           IL GKA+TTFNKRV V ETD G
Sbjct: 149 ILSGKARTTFNKRVPVPETDIG 143

[Close]

BLAST of CmaCh05G008830 vs. NCBI nr
Match: gi|1012332557|gb|KYP43984.1| (hypothetical protein KK1_034569 [Cajanus cajan])

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-26
Identity = 83/143 (58.04%), Postives = 88/143 (61.54%), Query Frame = 1


Query: 1   MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDS 60
           MNGAKRS EAVGC+N SVGE SALEG T  SSGGRS SENVGLSNAN          V  
Sbjct: 29  MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNAN----------VGE 88

Query: 61  DPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHA 120
           +P    P  S  +           V G  +       RGREN SSQ SSTRRY AEV HA
Sbjct: 89  NPMPRKPKGSSAR----------FVHGGVI-------RGRENASSQSSSTRRYSAEVIHA 144

Query: 121 ILPGKAQTTFNKRVLVSETDTGG 144
           ILPGKA+TTFNK V V ETDTGG
Sbjct: 149 ILPGKARTTFNKWVPVPETDTGG 144

[Close]

BLAST of CmaCh05G008830 vs. NCBI nr
Match: gi|674913481|emb|CDY19666.1| (BnaC09g29220D [Brassica napus])

HSP 1 Score: 125.6 bits (314), Expect = 7.2e-26
Identity = 78/133 (58.65%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 1   MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDS 60
           MNGAKRS EAVGCQNASVGE SAL GS R S GGRS SENVGLSNANI     P+     
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPR----- 60

Query: 61  DPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHA 120
            P  ++  +  G                        RRGREN  SQCSSTRRYGAEVTHA
Sbjct: 61  KPKGSSARFVHGGV----------------------RRGRENAPSQCSSTRRYGAEVTHA 106

Query: 121 ILPGKAQTTFNKR 134
           ILPGKA+TTFNKR
Sbjct: 121 ILPGKARTTFNKR 106

[Close]

BLAST of CmaCh05G008830 vs. NCBI nr
Match: gi|674871093|emb|CDY63595.1| (BnaUnng00830D [Brassica napus])

HSP 1 Score: 125.6 bits (314), Expect = 7.2e-26
Identity = 78/133 (58.65%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 1   MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDS 60
           MNGAKRS EAVGCQNASVGE SAL GS R S GGRS SENVGLSNANI     P+     
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPR----- 60

Query: 61  DPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHA 120
            P  ++  +  G                        RRGREN  SQCSSTRRYGAEVTHA
Sbjct: 61  KPKGSSARFVHGGV----------------------RRGRENAPSQCSSTRRYGAEVTHA 106

Query: 121 ILPGKAQTTFNKR 134
           ILPGKA+TTFNKR
Sbjct: 121 ILPGKARTTFNKR 106

[Close]

BLAST of CmaCh05G008830 vs. NCBI nr
Match: gi|674913470|emb|CDY19655.1| (BnaC09g29110D [Brassica napus])

HSP 1 Score: 125.6 bits (314), Expect = 7.2e-26
Identity = 78/133 (58.65%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 1   MNGAKRSVEAVGCQNASVGEHSALEGSTRESSGGRSRSENVGLSNANIRPKIRPKGVVDS 60
           MNGAKRS EAVGCQNASVGE SAL GS R S GGRS SENVGLSNANI     P+     
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPR----- 60

Query: 61  DPSSTTPCWSRGKEEARLAERWLSVQGRKVCFFKVRRRGRENTSSQCSSTRRYGAEVTHA 120
            P  ++  +  G                        RRGREN  SQCSSTRRYGAEVTHA
Sbjct: 61  KPKGSSARFVHGGV----------------------RRGRENAPSQCSSTRRYGAEVTHA 106

Query: 121 ILPGKAQTTFNKR 134
           ILPGKA+TTFNKR
Sbjct: 121 ILPGKARTTFNKR 106

The following BLAST results are available for this feature:

BLAST of CmaCh05G008830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh05G008830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067L301_JATCU	1.7e-29	59.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00471 PE=4 SV=1	[more]
A0A151RN55_CAJCA	3.8e-26	58.04	Uncharacterized protein OS=Cajanus cajan GN=KK1_034569 PE=4 SV=1	[more]
A0A0D2ZTA2_BRAOL	5.0e-26	58.65	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078J910_BRANA	5.0e-26	58.65	BnaUnng00830D protein OS=Brassica napus GN=BnaUnng00830D PE=4 SV=1	[more]
A0A078G2W9_BRANA	5.0e-26	58.65	BnaC09g29220D protein OS=Brassica napus GN=BnaC09g29220D PE=4 SV=1	[more]

BLAST of CmaCh05G008830 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh05G008830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|643736466\|gb\|KDP42772.1\|	2.4e-29	59.86	hypothetical protein JCGZ_00471 [Jatropha curcas]	[more]
gi\|1012332557\|gb\|KYP43984.1\|	5.5e-26	58.04	hypothetical protein KK1_034569 [Cajanus cajan]	[more]
gi\|674913481\|emb\|CDY19666.1\|	7.2e-26	58.65	BnaC09g29220D [Brassica napus]	[more]
gi\|674871093\|emb\|CDY63595.1\|	7.2e-26	58.65	BnaUnng00830D [Brassica napus]	[more]
gi\|674913470\|emb\|CDY19655.1\|	7.2e-26	58.65	BnaC09g29110D [Brassica napus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G008830.1	CmaCh05G008830.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G008830	Cucumber (Gy14) v2	cgybcmaB693
CmaCh05G008830	Melon (DHL92) v3.6.1	cmamedB805
CmaCh05G008830	Cucumber (Chinese Long) v3	cmacucB0947
CmaCh05G008830	Watermelon (97103) v2	cmawmbB804
CmaCh05G008830	Wax gourd	cmawgoB0931
CmaCh05G008830	Cucumber (Gy14) v1	cgycmaB0016
CmaCh05G008830	Cucurbita moschata (Rifu)	cmacmoB771
CmaCh05G008830	Cucurbita moschata (Rifu)	cmacmoB787
CmaCh05G008830	Wild cucumber (PI 183967)	cmacpiB813
CmaCh05G008830	Cucumber (Chinese Long) v2	cmacuB802