CmaCh05G008820 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh05G008820
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProtein TIC 214
LocationCma_Chr05 : 6414722 .. 6416233 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATAATCAATTCGGTCGGTTGTGGTCAGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATTTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTAGGTTTGATTATGGGACAGCTCAGTTCATATCGATCTATTATGTGCCTCTATCCGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTTGCTCTACCGTATCTTTTGTTTCATTTCTTCTGTAACAATCTCACTAACACTTTTTTTTATTATGGATCTACTACCAGAGCGTAATCTTAGCATTCAATGTGTATTCCCTCATAATCTCATCTGATATGAACCACGACCAAGGAATTTTTATACCTCAAGGTCCAATTACAAGGACGAGAGCTAAGAAGCTACAACAAACCTTATACAGTTATATTCAAGCTATGGTAAGCTCATCAAAGGAAATTCTAGAAGACGCTGGAGACCTCCCTTATATGTTGTGCAAAGTTGAGCTTCAAGAAAGAGATGAATTAAATGCACTTTAAGTTGCATTTAATGAACTCCGCTGAATTTATGAAACTAGTCCAAGGATGAGTCAATAAGCACATTTTATTAATTGCATTATTTAATTATAGTTTAAATATTTGTTTGTCATATTTAAGCTAGTTTTAAATATAGAAGTTAAGGTTATGTGGTAACCCACATAAGTTACTATATTCCACCATTAACTAGCCATTTTAATATGGAGGTTATGGGTATTTTTCATTTACTAGTCCATTTAATTTGGGAGTTATATATCACATAGGTTAAGGTTGTAAGGGCTCTTCTTTTCTTTGAATAGACATAGATTTTGGAATTAAGAATAGAATTTCTATTTTAGCTTTGTTGAGAGCTAAACTTTCTTTGCAAATTCTTGTGTTTAGAACTTGCATGTAGAGTCATTCAAGTGGTATTGATCAAATCATTTGTGGAGTGATTTGAATCACGAGTTTAGAAACGAGTTTTCTTTACTCTTGATCTTGATCATCAAGGTAATCCGTTCCATACTTTCCCTTGGGTTGATTTTTCATATCATCATCATTTATTATTCAACCATTTCATTCTACCAAGTTCAATGTTAGTTAGATTAGTCAAGATTTCTATTTTCGATGCAACAACAAGATGTTCTTTGTAAGAAGTCATTTTGTTGGTTGGTTAATTGGTCACATTTTCTTCATTCAATGGGTTGGATTGATATTAGCCTGGGTATAGCAAAAGAATTCTATGTAGATCTAATAAGTACCTTGGGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTACCTGTGTCTACTATTTAGGCGGAATACCTTCACCTATTATGAATAAGAAACTAAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCTTTGTTTCGGAAGAAAAGGAGGATCCAGACAAAATCGATGA

mRNA sequence

ATGAAGATAATCAATTCGGTCGGTTGTGGTCAGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATTTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTAGGTTTGATTATGGGACAGCTCAGTTCATATCGATCTATTATGTGCCTCTATCCGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTTGCTCTACCCAAAAGAATTCTATGTAGATCTAATAAGTACCTTGGGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGCGGAATACCTTCACCTATTATGAATAAGAAACTAAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCTTTGTTTCGGAAGAAAAGGAGGATCCAGACAAAATCGATGA

Coding sequence (CDS)

ATGAAGATAATCAATTCGGTCGGTTGTGGTCAGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATTTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTAGGTTTGATTATGGGACAGCTCAGTTCATATCGATCTATTATGTGCCTCTATCCGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTTGCTCTACCCAAAAGAATTCTATGTAGATCTAATAAGTACCTTGGGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGCGGAATACCTTCACCTATTATGAATAAGAAACTAAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCTTTGTTTCGGAAGAAAAGGAGGATCCAGACAAAATCGATGA

Protein sequence

MKIINSVGCGQTLLWISDHILHRALLFLPSPSSGYGRRNREESISNNRLGLIMGQLSSYRSIMCLYPHLALGRPHTITVLALPKRILCRSNKYLGSELRNSMARIFSGIPSPIMNKKLKETEGTKQEQEGSTEEDTSPSLCFGRKGGSRQNR
Homology
[Close]
BLAST of CmaCh05G008820 vs. Swiss-Prot
Match: TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.0e-11
Identity = 46/100 (46.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 81  ALPKRILCRSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKET------- 140
           ++   +L RSNKYL SELRNSMARIFS             +P+PI+ KKLKET       
Sbjct: 197 SIKSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRMPAPIVTKKLKETSKTEERG 256

Query: 141 ----------------EGTKQEQEGSTEEDTSPSLCFGRK 146
                           +GTKQEQE STEED SPSLC   K
Sbjct: 257 ESEEERDVEIETTSETKGTKQEQERSTEEDPSPSLCSEEK 296

[Close]
BLAST of CmaCh05G008820 vs. Swiss-Prot
Match: TI214_MORIN (Protein TIC 214 OS=Morus indica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 45/82 (54.88%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETE-------------- 141
           RSNKYL SELRN M RIFS             IPSPI+ KKLKETE              
Sbjct: 202 RSNKYLMSELRNFMVRIFSILLFITCVYYLGRIPSPILTKKLKETEERGESEEERDVEKT 261

[Close]
BLAST of CmaCh05G008820 vs. Swiss-Prot
Match: TI214_VITVI (Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-10
Identity = 45/95 (47.37%), Postives = 51/95 (53.68%), Query Frame = 1 

Query: 81  ALPKRILCRSNKYLGSELRNSMARIFS------------GIPSPIMNKKLK--------- 140
           ++   +L RSNKYL SELRNSMARIFS             IPSPI+ KK+K         
Sbjct: 200 SIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPILTKKMKETSETEERG 259

[Close]
BLAST of CmaCh05G008820 vs. Swiss-Prot
Match: TI214_DRIGR (Protein TIC 214 OS=Drimys granadensis GN=TIC214 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-10
Identity = 47/100 (47.00%), Postives = 52/100 (52.00%), Query Frame = 1 

Query: 81  ALPKRILCRSNKYLGSELRNSMARIFS------------GIPSPIMNKKLK--------- 140
           ++   +L RSNKYL SELRNSMARIFS             IPSPI+ KKLK         
Sbjct: 197 SIRSNVLIRSNKYLVSELRNSMARIFSILLFIICVYYLGRIPSPIVTKKLKETSETEERG 256

Query: 141 --------------ETEGTKQEQEGSTEEDTSPSLCFGRK 146
                         ET+GTKQEQEGSTEED  PS C   K
Sbjct: 257 ESEEETDVEIETTSETKGTKQEQEGSTEED--PSFCSEEK 294

[Close]
BLAST of CmaCh05G008820 vs. Swiss-Prot
Match: TI214_POPTR (Protein TIC 214 OS=Populus trichocarpa GN=TIC214 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-09
Identity = 45/84 (53.57%), Postives = 46/84 (54.76%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKE---------------- 141
           RSNKYL SELRNSMARIFS             IPSPI  KKLKE                
Sbjct: 208 RSNKYLVSELRNSMARIFSILLFITCVYSLGRIPSPIFTKKLKETSETEEREEETDVEIE 267

[Close]
BLAST of CmaCh05G008820 vs. TrEMBL
Match: A0A0S2IHC9_CUCPE (Ycf1 OS=Cucurbita pepo subsp. ovifera GN=ycf1 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 47/64 (73.44%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETEGTKQEQEGSTEEDT 141
           RSNKYL SE RNSMARIFS             IPSPI+ KKLKETEGTKQEQEGSTEEDT
Sbjct: 199 RSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDT 258

[Close]
BLAST of CmaCh05G008820 vs. TrEMBL
Match: A0A0S2IEB4_9ROSI (Uncharacterized protein OS=Cucurbita argyrosperma subsp. sororia PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 47/64 (73.44%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETEGTKQEQEGSTEEDT 141
           RSNKYL SE RNSMARIFS             IPSPI+ KKLKETEGTKQEQEGSTEEDT
Sbjct: 199 RSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDT 258

[Close]
BLAST of CmaCh05G008820 vs. TrEMBL
Match: A0A0S2IGQ3_9ROSI (Uncharacterized protein OS=Cucurbita okeechobeensis subsp. martinezii PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 47/64 (73.44%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETEGTKQEQEGSTEEDT 141
           RSNKYL SE RNSMARIFS             IPSPI+ KKLKETEGTKQEQEGSTEEDT
Sbjct: 199 RSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDT 258

[Close]
BLAST of CmaCh05G008820 vs. TrEMBL
Match: A0A0S2IEA2_9ROSI (Ycf1 OS=Cucurbita argyrosperma var. palmeri GN=ycf1 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 47/64 (73.44%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETEGTKQEQEGSTEEDT 141
           RSNKYL SE RNSMARIFS             IPSPI+ KKLKETEGTKQEQEGSTEEDT
Sbjct: 199 RSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDT 258

[Close]
BLAST of CmaCh05G008820 vs. TrEMBL
Match: A0A0S2IEM6_9ROSI (Uncharacterized protein OS=Cucurbita ecuadorensis PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 47/64 (73.44%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETEGTKQEQEGSTEEDT 141
           RSNKYL SE RNSMARIFS             IPSPI+ KKLKETEGTKQEQEGSTEEDT
Sbjct: 199 RSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDT 258

[Close]
BLAST of CmaCh05G008820 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 44/83 (53.01%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 81  ALPKRILCRSNKY--LGSELRNSMARIFS------------GIPSPIMNKKLK---ETEG 140
           ++   ++ RSNKY  L SELRNSMARIFS             IPSPI  KKLK   ET G
Sbjct: 201 SIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKGTSETGG 260

Query: 141 TKQEQEGSTEEDTSPSLCFGRKG 147
           TKQ+QE STEE   PSL F  +G
Sbjct: 261 TKQDQEVSTEEAPFPSL-FSEEG 282

[Close]
BLAST of CmaCh05G008820 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 44/83 (53.01%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 81  ALPKRILCRSNKY--LGSELRNSMARIFS------------GIPSPIMNKKLK---ETEG 140
           ++   ++ RSNKY  L SELRNSMARIFS             IPSPI  KKLK   ET G
Sbjct: 201 SIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKGTSETGG 260

Query: 141 TKQEQEGSTEEDTSPSLCFGRKG 147
           TKQ+QE STEE   PSL F  +G
Sbjct: 261 TKQDQEVSTEEAPFPSL-FSEEG 282

[Close]
BLAST of CmaCh05G008820 vs. TAIR10
Match: ATMG00370.1 (ATMG00370.1 Ycf1 protein)

HSP 1 Score: 48.5 bits (114), Expect = 4.2e-06
Identity = 43/114 (37.72%), Postives = 57/114 (50.00%), Query Frame = 1 

Query: 1   MKIINSVGC-GQTLLWISDHILHRALLFL-PSPSSGYGRRNREESISNNRLGLIMGQLSS 60
           MKIINSV   G    +++   +  + LFL  +     G    E+ +S    G I GQL  
Sbjct: 16  MKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATT-GFIAGQLMM 75

Query: 61  YRSIMCLYPHLALGRPHTITVLALPKRI----LCRSNKYL---GSELRNSMARI 106
           + SI     HLALGRPHTITVLALP  +       ++K+    GS  RN M  +
Sbjct: 76  FISIYYAPLHLALGRPHTITVLALPYLLFHFFFWNNHKHFFDYGSTTRNEMRNL 128

[Close]
BLAST of CmaCh05G008820 vs. TAIR10
Match: AT2G07739.1 (AT2G07739.1 Ycf1 protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.3e-06
Identity = 43/114 (37.72%), Postives = 56/114 (49.12%), Query Frame = 1 

Query: 1   MKIINSVGC-GQTLLWISDHILHRALLFL-PSPSSGYGRRNREESISNNRLGLIMGQLSS 60
           MKIINSV   G    +++   +    LFL  +     G    E+ +S    G I GQL  
Sbjct: 16  MKIINSVVVVGLYYGFLTTFSIGPFYLFLLRARVMDEGEEGTEKKVSATT-GFIAGQLMM 75

Query: 61  YRSIMCLYPHLALGRPHTITVLALPKRI----LCRSNKYL---GSELRNSMARI 106
           + SI     HLALGRPHTITVLALP  +       ++K+    GS  RN M  +
Sbjct: 76  FISIYYAPLHLALGRPHTITVLALPYLLFHFFFWNNHKHFFDYGSTTRNEMRNL 128

[Close]
BLAST of CmaCh05G008820 vs. NCBI nr
Match: gi|952955049|gb|ALO22403.1| (hypothetical protein (plastid) [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 47/64 (73.44%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETEGTKQEQEGSTEEDT 141
           RSNKYL SE RNSMARIFS             IPSPI+ KKLKETEGTKQEQEGSTEEDT
Sbjct: 199 RSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDT 258

[Close]
BLAST of CmaCh05G008820 vs. NCBI nr
Match: gi|952955245|gb|ALO22596.1| (hypothetical protein (plastid) [Cucurbita pepo subsp. fraterna])

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 47/64 (73.44%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETEGTKQEQEGSTEEDT 141
           RSNKYL SE RNSMARIFS             IPSPI+ KKLKETEGTKQEQEGSTEEDT
Sbjct: 199 RSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDT 258

[Close]
BLAST of CmaCh05G008820 vs. NCBI nr
Match: gi|952955401|gb|ALO22749.1| (Ycf1 (plastid) [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 47/64 (73.44%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETEGTKQEQEGSTEEDT 141
           RSNKYL SE RNSMARIFS             IPSPI+ KKLKETEGTKQEQEGSTEEDT
Sbjct: 199 RSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDT 258

[Close]
BLAST of CmaCh05G008820 vs. NCBI nr
Match: gi|952955287|gb|ALO22637.1| (Ycf1 (plastid) [Cucurbita pepo subsp. ovifera])

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 47/64 (73.44%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETEGTKQEQEGSTEEDT 141
           RSNKYL SE RNSMARIFS             IPSPI+ KKLKETEGTKQEQEGSTEEDT
Sbjct: 199 RSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDT 258

[Close]
BLAST of CmaCh05G008820 vs. NCBI nr
Match: gi|952955205|gb|ALO22556.1| (Ycf1 (plastid) [Cucurbita pepo subsp. fraterna])

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 47/64 (73.44%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 89  RSNKYLGSELRNSMARIFS------------GIPSPIMNKKLKETEGTKQEQEGSTEEDT 141
           RSNKYL SE RNSMARIFS             IPSPI+ KKLKETEGTKQEQEGSTEEDT
Sbjct: 199 RSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDT 258

The following BLAST results are available for this feature:
BLAST of CmaCh05G008820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI214_BUXMI9.0e-1146.00Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1[more]
TI214_MORIN2.0e-1054.88Protein TIC 214 OS=Morus indica GN=TIC214 PE=3 SV=1[more]
TI214_VITVI4.5e-1047.37Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1[more]
TI214_DRIGR5.9e-1047.00Protein TIC 214 OS=Drimys granadensis GN=TIC214 PE=3 SV=1[more]
TI214_POPTR1.0e-0953.57Protein TIC 214 OS=Populus trichocarpa GN=TIC214 PE=3 SV=1[more]
BLAST of CmaCh05G008820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IHC9_CUCPE4.0e-1373.44Ycf1 OS=Cucurbita pepo subsp. ovifera GN=ycf1 PE=4 SV=1[more]
A0A0S2IEB4_9ROSI4.0e-1373.44Uncharacterized protein OS=Cucurbita argyrosperma subsp. sororia PE=4 SV=1[more]
A0A0S2IGQ3_9ROSI4.0e-1373.44Uncharacterized protein OS=Cucurbita okeechobeensis subsp. martinezii PE=4 SV=1[more]
A0A0S2IEA2_9ROSI4.0e-1373.44Ycf1 OS=Cucurbita argyrosperma var. palmeri GN=ycf1 PE=4 SV=1[more]
A0A0S2IEM6_9ROSI4.0e-1373.44Uncharacterized protein OS=Cucurbita ecuadorensis PE=4 SV=1[more]
BLAST of CmaCh05G008820 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01130.12.4e-0953.01ATCG01130.1 Ycf1 protein[more]
ATCG01000.12.4e-0953.01ATCG01000.1 Ycf1 protein[more]
ATMG00370.14.2e-0637.72ATMG00370.1 Ycf1 protein[more]
AT2G07739.19.3e-0637.72 Ycf1 protein[more]
BLAST of CmaCh05G008820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952955049|gb|ALO22403.1|5.7e-1373.44hypothetical protein (plastid) [Cucurbita moschata][more]
gi|952955245|gb|ALO22596.1|5.7e-1373.44hypothetical protein (plastid) [Cucurbita pepo subsp. fraterna][more]
gi|952955401|gb|ALO22749.1|5.7e-1373.44Ycf1 (plastid) [Cucurbita pepo subsp. pepo][more]
gi|952955287|gb|ALO22637.1|5.7e-1373.44Ycf1 (plastid) [Cucurbita pepo subsp. ovifera][more]
gi|952955205|gb|ALO22556.1|5.7e-1373.44Ycf1 (plastid) [Cucurbita pepo subsp. fraterna][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008896TIC214
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G008820.1CmaCh05G008820.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008896Protein TIC214PFAMPF05758Ycf1coord: 41..84
score: 9.0E-8coord: 86..136
score: 1.
NoneNo IPR availablePANTHERPTHR33163FAMILY NOT NAMEDcoord: 89..140
score: 2.5
NoneNo IPR availablePANTHERPTHR33163:SF3MEMBRANE PROTEIN YCF1-RELATEDcoord: 89..140
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh05G008820Wax gourdcmawgoB0931
CmaCh05G008820Cucumber (Gy14) v1cgycmaB0016
CmaCh05G008820Cucurbita moschata (Rifu)cmacmoB771
CmaCh05G008820Cucurbita moschata (Rifu)cmacmoB787
CmaCh05G008820Wild cucumber (PI 183967)cmacpiB813
CmaCh05G008820Cucumber (Chinese Long) v2cmacuB802
CmaCh05G008820Cucumber (Gy14) v2cgybcmaB693
CmaCh05G008820Melon (DHL92) v3.6.1cmamedB805
CmaCh05G008820Cucumber (Chinese Long) v3cmacucB0947
CmaCh05G008820Watermelon (97103) v2cmawmbB804