CmaCh05G008810 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh05G008810
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH dehydrogenase subunit 5
LocationCma_Chr05 : 6413544 .. 6413841 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTGTTGTTAGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGGGGGTTTAACCATGAGCCAATTACAAAAATATTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTTGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACAATAATAGCCTGTTCCACATTGTAGGATTAACAACATTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTCAAACAGTGGAAAAACAAATAA

mRNA sequence

ATGGAATCTGTTGTTAGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGGGGGTACCCTTTCTCTCTCTTTGTTGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACAATAATAGCCTGTTCCACATTGTAGGATTAACAACATTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTCAAACAGTGGAAAAACAAATAA

Coding sequence (CDS)

ATGGAATCTGTTGTTAGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGGGGGTACCCTTTCTCTCTCTTTGTTGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACAATAATAGCCTGTTCCACATTGTAGGATTAACAACATTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTCAAACAGTGGAAAAACAAATAA

Protein sequence

MESVVRYSPDKSQNMVLMGGYPFSLFVVFHPLPAFGPKMKFLMIVGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQWKNK
Homology
[Close]
BLAST of CmaCh05G008810 vs. Swiss-Prot
Match: NU5C_MORIN (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Morus indica GN=ndhF PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 43/97 (44.33%), Postives = 51/97 (52.58%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYPFSLFVV-------------FHPLPAFGPKMKFL---MI 60
           MES+V YSPDKSQN+VLMGG    + +                PL  F  K + L    +
Sbjct: 367 MESIVGYSPDKSQNLVLMGGLKKHVPITKTSFLLGTLSLCGIPPLGCFWSKDEILNDSWL 426

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQ 82
              I     F   GLT FYMF IYLLTFEGHLN++ Q
Sbjct: 427 YSPIFAIIAFSTAGLTAFYMFRIYLLTFEGHLNLYFQ 463

[Close]
BLAST of CmaCh05G008810 vs. Swiss-Prot
Match: NU5C_NASOF (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Nasturtium officinale GN=ndhF PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-10
Identity = 43/95 (45.26%), Postives = 52/95 (54.74%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYPFSL------FVV-------FHPLPAFGPKMKFL---MI 60
           ME++V YSPDKSQNM+LMGG    +      F+V         PL  F  K + L   ++
Sbjct: 367 MEAIVGYSPDKSQNMILMGGLTKHVPITKIAFLVGTLSLCGIPPLACFWSKDEILNDSLL 426

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIF 80
              I     F   GLT FYMF IYLLTFEGHLN +
Sbjct: 427 FSPIFAIIAFSTAGLTAFYMFRIYLLTFEGHLNTY 461

[Close]
BLAST of CmaCh05G008810 vs. Swiss-Prot
Match: NU5C_POPAL (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Populus alba GN=ndhF PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-10
Identity = 43/97 (44.33%), Postives = 49/97 (50.52%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYPFSLFVV-------------FHPLPAFGPKMKFL---MI 60
           ME +V YSPDKSQNMVLMGG    + +                PL  F  K + L     
Sbjct: 369 MEGIVGYSPDKSQNMVLMGGLTKHVPITKIAFLLGTLSLCGIPPLACFWSKDEILNDSWS 428

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQ 82
              I     F   GLT FYMF +YLLTFEGHLNI+ Q
Sbjct: 429 YSPIFAIIAFSTAGLTAFYMFRVYLLTFEGHLNIYFQ 465

[Close]
BLAST of CmaCh05G008810 vs. Swiss-Prot
Match: NU5C_POPTR (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Populus trichocarpa GN=ndhF PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-10
Identity = 43/97 (44.33%), Postives = 49/97 (50.52%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYPFSLFVV-------------FHPLPAFGPKMKFL---MI 60
           ME +V YSPDKSQNMVLMGG    + +                PL  F  K + L     
Sbjct: 369 MEVIVGYSPDKSQNMVLMGGLTKHVPITKIAFLLGTLSLCGIPPLACFWSKDEILNDSWS 428

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQ 82
              I     F   GLT FYMF +YLLTFEGHLNI+ Q
Sbjct: 429 YSPIFAIIAFSTAGLTAFYMFRVYLLTFEGHLNIYFQ 465

[Close]
BLAST of CmaCh05G008810 vs. Swiss-Prot
Match: NU5C_MALAR (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Malvaviscus arboreus GN=ndhF PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-10
Identity = 45/97 (46.39%), Postives = 54/97 (55.67%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGY----PFS--LFVV-------FHPLPAFGPKMKFLM---I 60
           ME+VV YSP+KSQNMVLMGG     P +   F++         PL  F  K + L    +
Sbjct: 367 MEAVVGYSPEKSQNMVLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWL 426

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQ 82
              I     +   GLT FYMF IYLLTFEGHLNI+ Q
Sbjct: 427 YSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLNIYFQ 463

[Close]
BLAST of CmaCh05G008810 vs. TrEMBL
Match: E5KUE2_CORLA (NADH dehydrogenase subunit 5 OS=Corynocarpus laevigatus GN=ndhF PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-10
Identity = 50/101 (49.50%), Postives = 59/101 (58.42%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGY----PFSLFVVFHPLPAFG-PKMKFLMIVGCIHNNS--- 60
           MESVV YSPDKSQNMVLMGG     P ++F +   L   G P +        I N+S   
Sbjct: 367 MESVVGYSPDKSQNMVLMGGLTKHVPITIFFLLGTLSLCGIPPLACFWSKDEILNDSWLY 426

Query: 61  --LFHIV-----GLTTFYMFPIYLLTFEGHLNI-FKQWKNK 86
             +F I+     GLT FYMF IYLLTFEGHLN+ FK +  K
Sbjct: 427 SPIFAIIACSTAGLTAFYMFRIYLLTFEGHLNLSFKSYSPK 467

[Close]
BLAST of CmaCh05G008810 vs. TrEMBL
Match: Q29S59_CORLA (NADH dehydrogenase subunit F (Fragment) OS=Corynocarpus laevigatus GN=ndhF PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-10
Identity = 50/101 (49.50%), Postives = 59/101 (58.42%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGY----PFSLFVVFHPLPAFG-PKMKFLMIVGCIHNNS--- 60
           MESVV YSPDKSQNMVLMGG     P ++F +   L   G P +        I N+S   
Sbjct: 34  MESVVGYSPDKSQNMVLMGGLTKHVPITIFFLLGTLSLCGIPPLACFWSKDEILNDSWLY 93

Query: 61  --LFHIV-----GLTTFYMFPIYLLTFEGHLNI-FKQWKNK 86
             +F I+     GLT FYMF IYLLTFEGHLN+ FK +  K
Sbjct: 94  SPIFAIIACSTAGLTAFYMFRIYLLTFEGHLNLSFKSYSPK 134

[Close]
BLAST of CmaCh05G008810 vs. TrEMBL
Match: Q6JXB3_ARTAL (NADH dehydrogenase subunit F (Fragment) OS=Artocarpus altilis GN=ndhF PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-09
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYPFSLFVV-------------FHPLPAFGPKMKFL---MI 60
           MES+V YSPDKSQN+VLMGG    + +                PL +F  K + L    +
Sbjct: 329 MESIVGYSPDKSQNLVLMGGLKKHVPITKISFLLGTLSLCGIPPLASFWSKDEILNDSWV 388

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQWKN 85
              I     F  VGLT FYMF IYLLTFEGHLN++ Q  N
Sbjct: 389 YSPIFAIIAFSTVGLTAFYMFRIYLLTFEGHLNLYFQTYN 428

[Close]
BLAST of CmaCh05G008810 vs. TrEMBL
Match: Q8HUW2_ARTAL (NADH dehydrogenase (Fragment) OS=Artocarpus altilis GN=ndhF PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-09
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYPFSLFVV-------------FHPLPAFGPKMKFL---MI 60
           MES+V YSPDKSQN+VLMGG    + +                PL +F  K + L    +
Sbjct: 37  MESIVGYSPDKSQNLVLMGGLKKHVPITKTSFLLGTLSLCGIPPLASFWSKDEILNDSWV 96

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQWKN 85
              I     F  VGLT FYMF IYLLTFEGHLN++ Q  N
Sbjct: 97  YSPIFAIIAFSTVGLTAFYMFRIYLLTFEGHLNLYFQTYN 136

[Close]
BLAST of CmaCh05G008810 vs. TrEMBL
Match: Q6JXC4_MORNI (NADH dehydrogenase subunit F (Fragment) OS=Morus nigra GN=ndhF PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-09
Identity = 46/97 (47.42%), Postives = 53/97 (54.64%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYP---------FSLFVVFH----PLPAFGPKMKFL---MI 60
           MES+V YSPDKSQN+VLMGG           F L  + H    PL  F  K + L    +
Sbjct: 329 MESIVGYSPDKSQNLVLMGGLKKHVPITKTSFLLGTLSHCGIPPLGCFWSKNEILNDSWL 388

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQ 82
              I     F   GLT FYMF IYLLTFEGHLN++ Q
Sbjct: 389 YSPIFAIIAFSTTGLTAFYMFRIYLLTFEGHLNLYFQ 425

[Close]
BLAST of CmaCh05G008810 vs. TAIR10
Match: ATCG01010.1 (ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-10
Identity = 40/95 (42.11%), Postives = 49/95 (51.58%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYPFSLFVV-------------FHPLPAFGPKMKFL---MI 60
           ME++V YSPDKSQNM+LMGG    + +                PL  F  K + L   ++
Sbjct: 367 MEAIVGYSPDKSQNMILMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNDSLL 426

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIF 80
              I         GLT FYMF IYLLTFEGHLN +
Sbjct: 427 FSPIFAIIACSTAGLTAFYMFRIYLLTFEGHLNTY 461

[Close]
BLAST of CmaCh05G008810 vs. NCBI nr
Match: gi|70780081|gb|AAZ08360.1| (NADH dehydrogenase subunit F, partial [Corynocarpus laevigata])

HSP 1 Score: 71.2 bits (173), Expect = 9.5e-10
Identity = 50/101 (49.50%), Postives = 59/101 (58.42%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGY----PFSLFVVFHPLPAFG-PKMKFLMIVGCIHNNS--- 60
           MESVV YSPDKSQNMVLMGG     P ++F +   L   G P +        I N+S   
Sbjct: 34  MESVVGYSPDKSQNMVLMGGLTKHVPITIFFLLGTLSLCGIPPLACFWSKDEILNDSWLY 93

Query: 61  --LFHIV-----GLTTFYMFPIYLLTFEGHLNI-FKQWKNK 86
             +F I+     GLT FYMF IYLLTFEGHLN+ FK +  K
Sbjct: 94  SPIFAIIACSTAGLTAFYMFRIYLLTFEGHLNLSFKSYSPK 134

[Close]
BLAST of CmaCh05G008810 vs. NCBI nr
Match: gi|317046219|ref|YP_004072508.1| (NADH dehydrogenase subunit 5 [Corynocarpus laevigata])

HSP 1 Score: 71.2 bits (173), Expect = 9.5e-10
Identity = 50/101 (49.50%), Postives = 59/101 (58.42%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGY----PFSLFVVFHPLPAFG-PKMKFLMIVGCIHNNS--- 60
           MESVV YSPDKSQNMVLMGG     P ++F +   L   G P +        I N+S   
Sbjct: 367 MESVVGYSPDKSQNMVLMGGLTKHVPITIFFLLGTLSLCGIPPLACFWSKDEILNDSWLY 426

Query: 61  --LFHIV-----GLTTFYMFPIYLLTFEGHLNI-FKQWKNK 86
             +F I+     GLT FYMF IYLLTFEGHLN+ FK +  K
Sbjct: 427 SPIFAIIACSTAGLTAFYMFRIYLLTFEGHLNLSFKSYSPK 467

[Close]
BLAST of CmaCh05G008810 vs. NCBI nr
Match: gi|24635036|gb|AAN63308.1| (NADH dehydrogenase [Artocarpus altilis])

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-09
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYPFSLFVV-------------FHPLPAFGPKMKFL---MI 60
           MES+V YSPDKSQN+VLMGG    + +                PL +F  K + L    +
Sbjct: 37  MESIVGYSPDKSQNLVLMGGLKKHVPITKTSFLLGTLSLCGIPPLASFWSKDEILNDSWV 96

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQWKN 85
              I     F  VGLT FYMF IYLLTFEGHLN++ Q  N
Sbjct: 97  YSPIFAIIAFSTVGLTAFYMFRIYLLTFEGHLNLYFQTYN 136

[Close]
BLAST of CmaCh05G008810 vs. NCBI nr
Match: gi|33950091|gb|AAQ55893.1| (NADH dehydrogenase subunit F [Artocarpus altilis])

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-09
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYPFSLFVV-------------FHPLPAFGPKMKFL---MI 60
           MES+V YSPDKSQN+VLMGG    + +                PL +F  K + L    +
Sbjct: 329 MESIVGYSPDKSQNLVLMGGLKKHVPITKISFLLGTLSLCGIPPLASFWSKDEILNDSWV 388

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQWKN 85
              I     F  VGLT FYMF IYLLTFEGHLN++ Q  N
Sbjct: 389 YSPIFAIIAFSTVGLTAFYMFRIYLLTFEGHLNLYFQTYN 428

[Close]
BLAST of CmaCh05G008810 vs. NCBI nr
Match: gi|33950069|gb|AAQ55882.1| (NADH dehydrogenase subunit F [Morus nigra])

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-09
Identity = 46/97 (47.42%), Postives = 53/97 (54.64%), Query Frame = 1 

Query: 1   MESVVRYSPDKSQNMVLMGGYP---------FSLFVVFH----PLPAFGPKMKFL---MI 60
           MES+V YSPDKSQN+VLMGG           F L  + H    PL  F  K + L    +
Sbjct: 329 MESIVGYSPDKSQNLVLMGGLKKHVPITKTSFLLGTLSHCGIPPLGCFWSKNEILNDSWL 388

Query: 61  VGCIHNNSLFHIVGLTTFYMFPIYLLTFEGHLNIFKQ 82
              I     F   GLT FYMF IYLLTFEGHLN++ Q
Sbjct: 389 YSPIFAIIAFSTTGLTAFYMFRIYLLTFEGHLNLYFQ 425

The following BLAST results are available for this feature:
BLAST of CmaCh05G008810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NU5C_MORIN1.9e-1044.33NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Morus indica GN=ndhF ... [more]
NU5C_NASOF3.3e-1045.26NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Nasturtium officinale... [more]
NU5C_POPAL4.3e-1044.33NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Populus alba GN=ndhF ... [more]
NU5C_POPTR7.3e-1044.33NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Populus trichocarpa G... [more]
NU5C_MALAR7.3e-1046.39NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Malvaviscu... [more]
BLAST of CmaCh05G008810 vs. TrEMBL
Match NameE-valueIdentityDescription
E5KUE2_CORLA6.7e-1049.50NADH dehydrogenase subunit 5 OS=Corynocarpus laevigatus GN=ndhF PE=3 SV=1[more]
Q29S59_CORLA6.7e-1049.50NADH dehydrogenase subunit F (Fragment) OS=Corynocarpus laevigatus GN=ndhF PE=4 ... [more]
Q6JXB3_ARTAL1.9e-0945.00NADH dehydrogenase subunit F (Fragment) OS=Artocarpus altilis GN=ndhF PE=3 SV=1[more]
Q8HUW2_ARTAL1.9e-0945.00NADH dehydrogenase (Fragment) OS=Artocarpus altilis GN=ndhF PE=4 SV=1[more]
Q6JXC4_MORNI2.5e-0947.42NADH dehydrogenase subunit F (Fragment) OS=Morus nigra GN=ndhF PE=3 SV=1[more]
BLAST of CmaCh05G008810 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01010.12.0e-1042.11ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein[more]
BLAST of CmaCh05G008810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|70780081|gb|AAZ08360.1|9.5e-1049.50NADH dehydrogenase subunit F, partial [Corynocarpus laevigata][more]
gi|317046219|ref|YP_004072508.1|9.5e-1049.50NADH dehydrogenase subunit 5 [Corynocarpus laevigata][more]
gi|24635036|gb|AAN63308.1|2.8e-0945.00NADH dehydrogenase [Artocarpus altilis][more]
gi|33950091|gb|AAQ55893.1|2.8e-0945.00NADH dehydrogenase subunit F [Artocarpus altilis][more]
gi|33950069|gb|AAQ55882.1|3.6e-0947.42NADH dehydrogenase subunit F [Morus nigra][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G008810.1CmaCh05G008810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh05G008810Cucumber (Gy14) v2cgybcmaB693
CmaCh05G008810Melon (DHL92) v3.6.1cmamedB805
CmaCh05G008810Cucumber (Chinese Long) v3cmacucB0947
CmaCh05G008810Watermelon (97103) v2cmawmbB804
CmaCh05G008810Wax gourdcmawgoB0931
CmaCh05G008810Cucumber (Gy14) v1cgycmaB0016
CmaCh05G008810Cucurbita moschata (Rifu)cmacmoB771
CmaCh05G008810Cucurbita moschata (Rifu)cmacmoB787
CmaCh05G008810Wild cucumber (PI 183967)cmacpiB813
CmaCh05G008810Cucumber (Chinese Long) v2cmacuB802