CmaCh05G008770 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G008770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr05 : 6220608 .. 6221507 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGGTTCGGGTCAAATAGGAAGAACTCGAAGATTCCACCTCTGGAAAGCGCCTACACCTAATAGCTTAAGCCGTTGTTCCCATTTTCTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAATGAGTGCGCTTTACTAAGAGAATCTCAAGTAAAGGCTTGCCGCTTTTCTCCGGGTCGAGCTGCTTCACTCCTTCGATTGATTGTTCTCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCCCCTTTCTCACGTAAAAGCGATCATCATTCGAACACGCCGCGTTTTACTGGGAAGGATCGAACCATGGGAACGAATCTACAGGGCTATCACCTTCTTTGGCCAGATCTTCCAACCTTTTCACAATTACAGTTCACTGCGCCCTTTACCTCTACAACTCGGTAAAGCTGCTTGCTGGTTTTTCCATCATCCAATCCACAACAAATCGAATGAAACCTGGCGAAAAAGAAGTTCACACTTTACGAACGAAGCTTCGTCTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTCTCTTCCTTTAGCTACTCAGATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACA

mRNA sequence

TTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGGTTCGGGTCAAATAGGAAGAACTCGAAGATTCCACCTCTGGAAAGCGCCTACACCTAATAGCTTAAGCCGTTGTTCCCATTTTCTCGCTGACCCATCATGCAAAAGAGAATCTCAAGTAAAGGCTTGCCGCTTTTCTCCGGGTCGAGCTGCTTCACTCCTTCGATTGATTGTTCTCATCGGATCTCAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACA

Coding sequence (CDS)

TTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGGTTCGGGTCAAATAGGAAGAACTCGAAGATTCCACCTCTGGAAAGCGCCTACACCTAATAGCTTAAGCCGTTGTTCCCATTTTCTCGCTGACCCATCATGCAAAAGAGAATCTCAAGTAAAGGCTTGCCGCTTTTCTCCGGGTCGAGCTGCTTCACTCCTTCGATTGATTGTTCTCATCGGATCTCAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACA

Protein sequence

FRGKPAISDLGWPFTPSHKSSPYFATYVGSVLQGLLELSSTCSWLDRSGSGQIGRTRRFHLWKAPTPNSLSRCSHFLADPSCKRESQVKACRFSPGRAASLLRLIVLIGSQSKERRLATELGYGFPIGDPWIT

Homology

[Close]

BLAST of CmaCh05G008770 vs. Swiss-Prot
Match: M030_ARATH (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-07
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1


Query: 110 SQSKERRLATELGYGFPIGDPWIT 134
           S+SKERRLATELGYGFPIGDPWIT
Sbjct: 8   SKSKERRLATELGYGFPIGDPWIT 31

[Close]

BLAST of CmaCh05G008770 vs. TrEMBL
Match: E2S3A3_9CORY (Uncharacterized protein OS=Corynebacterium pseudogenitalium ATCC 33035 GN=HMPREF0305_11005 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 1  FRGKPAISDLGWPFTPSHKSSPYFATYVGSVLQGLLELSST 42
          FRG+PAI++  WPFTP+H SSP F+TYVGS L  LL+L  T
Sbjct: 31 FRGEPAITEFDWPFTPTHSSSPQFSTYVGSRLHNLLQLLHT 71

[Close]

BLAST of CmaCh05G008770 vs. TAIR10
Match: ATMG00030.1 (ATMG00030.1 hypothetical protein)

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-08
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1


Query: 110 SQSKERRLATELGYGFPIGDPWIT 134
           S+SKERRLATELGYGFPIGDPWIT
Sbjct: 8   SKSKERRLATELGYGFPIGDPWIT 31

[Close]

BLAST of CmaCh05G008770 vs. NCBI nr
Match: gi|311304693|gb|EFQ80765.1| (hypothetical protein HMPREF0305_11076 [Corynebacterium pseudogenitalium ATCC 33035])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 1  FRGKPAISDLGWPFTPSHKSSPYFATYVGSVLQGLLELSST 42
          FRG+PAI++  WPFTP+H SSP F+TYVGS L  LL+L  T
Sbjct: 31 FRGEPAITEFDWPFTPTHSSSPQFSTYVGSRLHNLLQLLHT 71

The following BLAST results are available for this feature:

BLAST of CmaCh05G008770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
M030_ARATH	6.9e-07	95.83	Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CmaCh05G008770 vs. TrEMBL


Match Name	E-value	Identity	Description
E2S3A3_9CORY	1.1e-06	63.41	Uncharacterized protein OS=Corynebacterium pseudogenitalium ATCC 33035 GN=HMPREF...	[more]

BLAST of CmaCh05G008770 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00030.1	3.9e-08	95.83	ATMG00030.1 hypothetical protein	[more]

BLAST of CmaCh05G008770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|311304693\|gb\|EFQ80765.1\|	1.5e-06	63.41	hypothetical protein HMPREF0305_11076 [Corynebacterium pseudogenitalium ATCC 330...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G008770.1	CmaCh05G008770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37773	FAMILY NOT NAMED	coord: 110..133 score: 9.7
None	No IPR available	PANTHER	PTHR37773:SF1	SUBFAMILY NOT NAMED	coord: 110..133 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G008770	Wax gourd	cmawgoB0931
CmaCh05G008770	Cucumber (Gy14) v1	cgycmaB0016
CmaCh05G008770	Cucurbita moschata (Rifu)	cmacmoB771
CmaCh05G008770	Cucurbita moschata (Rifu)	cmacmoB787
CmaCh05G008770	Wild cucumber (PI 183967)	cmacpiB813
CmaCh05G008770	Cucumber (Chinese Long) v2	cmacuB802
CmaCh05G008770	Cucumber (Gy14) v2	cgybcmaB693
CmaCh05G008770	Melon (DHL92) v3.6.1	cmamedB805
CmaCh05G008770	Cucumber (Chinese Long) v3	cmacucB0947
CmaCh05G008770	Watermelon (97103) v2	cmawmbB804