CmaCh05G008730 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G008730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	60S ribosomal protein L38, putative
Location	Cma_Chr05 : 6133177 .. 6134036 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCTATGGTATGTTTGTTATATAATAGTGTAGTAGTTGATTGAATACTTGAACTGAGTTGGATTTGTATGTTTGGAGATAAAAGAGTTGATTTTGGGTATGTATGTATGGATGGACAGCCGAAGCAAATCCATGAGATAAAGGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATCAAGAGGAGCAAGGATGTAGTGAAGTTTAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTATTTGACTCCGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTATTTTTTTTAAGCTCTTTTCAAATATGTTATGTTGTTGAAGCCTTTTATTTAATTTTATACATACTTTTGGCTTAAACTGCTGTAGGTTTGAGTGTGCAAGATCTCTGAACAAAGTAGTGTGTGCTTGTTGTGGGTGATCTTTCTTTGCAAAAAATCGATCAGGAGGCTGAAGAGAAAAACGTTTGCCAGTATGCCGTCTATTACTTATTTATTTTCAATCATTGAACGAATGTCTTGTTGATTTTTATAGGGACTGGCTGGTGTTCTTGGTATAAATAGGACTTAACAGTGTTTCTTTAAGTCTATCAACCTTTTCAAAATTTTCAACCATCTGAGATTGTATTGATTCCTTTCCAAACTTCAATCATCGTTAGCCCTCTTTTTTTTTTTTAGCCCCATCTGTTCAAACAAAAATGTTATTAAGGTATTCCTTCTCTGTTTGTTTGTTTGATAACCAAACATCATTTTATCTGTTCTTTCAAAAAGGTTAAACTCTTCACATGTAACAAAAGAAAAGCAAACATAAAGTAATTCATCACTTTAATCAGCG

mRNA sequence

ATGCCATCTATGCCGAAGCAAATCCATGAGATAAAGGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATCAAGAGGAGCAAGGATGTAGTGAAGTTTAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTATTTGACTCCGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTTTGAGTGTGCAAGATCTCTGAACAAAGTAGTGTGTGCTTGTTGTGGGTGATCTTTCTTTGCAAAAAATCGATCAGGAGGCTGAAGAGAAAAACGTTTGCCAGTATGCCGTCTATTACTTATTTATTTTCAATCATTGAACGAATGTCTTGTTGATTTTTATAGGGACTGGCTGGTGTTCTTGGTATAAATAGGACTTAACAGTGTTTCTTTAAGTCTATCAACCTTTTCAAAATTTTCAACCATCTGAGATTGTATTGATTCCTTTCCAAACTTCAATCATCGTTAGCCCTCTTTTTTTTTTTTAGCCCCATCTGTTCAAACAAAAATGTTATTAAGGTATTCCTTCTCTGTTTGTTTGTTTGATAACCAAACATCATTTTATCTGTTCTTTCAAAAAGGTTAAACTCTTCACATGTAACAAAAGAAAAGCAAACATAAAGTAATTCATCACTTTAATCAGCG

Coding sequence (CDS)

ATGCCATCTATGCCGAAGCAAATCCATGAGATAAAGGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATCAAGAGGAGCAAGGATGTAGTGAAGTTTAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTATTTGACTCCGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTTTGAGTGTGCAAGATCTCTGA

Protein sequence

MPSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Homology

[Close]

BLAST of CmaCh05G008730 vs. Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.7e-31
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 64 PPGLSVQDL 73
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh05G008730 vs. Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.6e-29
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 64 PPGLSVQDL 73
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh05G008730 vs. Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.2e-26
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 64 PPGLSVQDL 73
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of CmaCh05G008730 vs. Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-24
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 64 PPGLSVQDL 73
          PPGL+V+DL
Sbjct: 61 PPGLAVKDL 69

[Close]

BLAST of CmaCh05G008730 vs. Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 9.8e-24
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 64 PPGLSVQDL 73
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of CmaCh05G008730 vs. TrEMBL
Match: A0A068U8M1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.6e-31
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 2   PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
           P MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ
Sbjct: 34  PKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 93

Query: 62  SLPPGLSVQDL 73
           SLPPGLSVQDL
Sbjct: 94  SLPPGLSVQDL 104

[Close]

BLAST of CmaCh05G008730 vs. TrEMBL
Match: A0A078I3U9_BRANA (BnaC03g24210D protein OS=Brassica napus GN=BnaC03g24210D PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-30
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 2  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
          P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCSKYLYTLCVFD EKADKLKQ
Sbjct: 16 PTMPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSKYLYTLCVFDQEKADKLKQ 75

Query: 62 SLPPGLSVQDL 73
          SLPPGLSVQDL
Sbjct: 76 SLPPGLSVQDL 86

[Close]

BLAST of CmaCh05G008730 vs. TrEMBL
Match: A0A068VBT7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.8e-30
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 3   SMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 62
           +MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS
Sbjct: 35  NMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 94

Query: 63  LPPGLSVQDL 73
           LPPGLSVQDL
Sbjct: 95  LPPGLSVQDL 104

[Close]

BLAST of CmaCh05G008730 vs. TrEMBL
Match: R0HM91_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10018301mg PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.9e-30
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 2   PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
           P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQ
Sbjct: 30  PTMPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQ 89

Query: 62  SLPPGLSVQDL 73
           SLPPGLSVQDL
Sbjct: 90  SLPPGLSVQDL 100

[Close]

BLAST of CmaCh05G008730 vs. TrEMBL
Match: A0A058ZXA9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00006 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.9e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 64 PPGLSVQDL 73
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh05G008730 vs. TAIR10
Match: AT2G43460.1 (AT2G43460.1 Ribosomal L38e protein family)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 64 PPGLSVQDL 73
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh05G008730 vs. TAIR10
Match: AT3G59540.1 (AT3G59540.1 Ribosomal L38e protein family)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 4  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 64 PPGLSVQDL 73
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of CmaCh05G008730 vs. NCBI nr
Match: gi|661891717|emb|CDP04642.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 2   PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
           P MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ
Sbjct: 34  PKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 93

Query: 62  SLPPGLSVQDL 73
           SLPPGLSVQDL
Sbjct: 94  SLPPGLSVQDL 104

[Close]

BLAST of CmaCh05G008730 vs. NCBI nr
Match: gi|674888423|emb|CDY44229.1| (BnaC03g24210D [Brassica napus])

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-30
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 2  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 61
          P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCSKYLYTLCVFD EKADKLKQ
Sbjct: 16 PTMPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSKYLYTLCVFDQEKADKLKQ 75

Query: 62 SLPPGLSVQDL 73
          SLPPGLSVQDL
Sbjct: 76 SLPPGLSVQDL 86

[Close]

BLAST of CmaCh05G008730 vs. NCBI nr
Match: gi|661878012|emb|CDP18171.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 138.3 bits (347), Expect = 5.4e-30
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 3   SMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 62
           +MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS
Sbjct: 35  NMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 94

Query: 63  LPPGLSVQDL 73
           LPPGLSVQDL
Sbjct: 95  LPPGLSVQDL 104

[Close]

BLAST of CmaCh05G008730 vs. NCBI nr
Match: gi|297735234|emb|CBI17596.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 137.9 bits (346), Expect = 7.0e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 4   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 64  PPGLSVQDL 73
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127

[Close]

BLAST of CmaCh05G008730 vs. NCBI nr
Match: gi|629123314|gb|KCW87739.1| (hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis])

HSP 1 Score: 137.9 bits (346), Expect = 7.0e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 4   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 32  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

Query: 64  PPGLSVQDL 73
           PPGLSVQDL
Sbjct: 92  PPGLSVQDL 100

The following BLAST results are available for this feature:

BLAST of CmaCh05G008730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL38_ARATH	3.7e-31	95.65	60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1	[more]
RL38_SOLLC	4.6e-29	91.30	60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1	[more]
RL38_BRABE	6.2e-26	82.61	60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1	[more]
RL38_MOUSE	3.4e-24	78.26	60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3	[more]
RL38_RAT	9.8e-24	76.81	60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2	[more]

BLAST of CmaCh05G008730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068U8M1_COFCA	7.6e-31	98.59	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1	[more]
A0A078I3U9_BRANA	2.2e-30	95.77	BnaC03g24210D protein OS=Brassica napus GN=BnaC03g24210D PE=3 SV=1	[more]
A0A068VBT7_COFCA	3.8e-30	98.57	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1	[more]
R0HM91_9BRAS	4.9e-30	94.37	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10018301mg PE=3...	[more]
A0A058ZXA9_EUCGR	4.9e-30	100.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00006 PE=3 SV=1	[more]

BLAST of CmaCh05G008730 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43460.1	2.1e-32	95.65	Ribosomal L38e protein family	[more]
AT3G59540.1	2.1e-32	95.65	Ribosomal L38e protein family	[more]

BLAST of CmaCh05G008730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661891717\|emb\|CDP04642.1\|	1.1e-30	98.59	unnamed protein product [Coffea canephora]	[more]
gi\|674888423\|emb\|CDY44229.1\|	3.2e-30	95.77	BnaC03g24210D [Brassica napus]	[more]
gi\|661878012\|emb\|CDP18171.1\|	5.4e-30	98.57	unnamed protein product [Coffea canephora]	[more]
gi\|297735234\|emb\|CBI17596.3\|	7.0e-30	100.00	unnamed protein product [Vitis vinifera]	[more]
gi\|629123314\|gb\|KCW87739.1\|	7.0e-30	100.00	hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002675	Ribosomal_L38e

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G008730.1	CmaCh05G008730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PRODOM	PD010361		coord: 4..72 score: 3.0
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 5..72 score: 2.4
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 5..71 score: 7.4
None	No IPR available	PANTHER	PTHR10965:SF3	SUBFAMILY NOT NAMED	coord: 5..72 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G008730	MELO3C008569	Melon (DHL92) v3.5.1	cmameB736
CmaCh05G008730	MELO3C008569.2	Melon (DHL92) v3.6.1	cmamedB830
CmaCh05G008730	Bhi06G000795	Wax gourd	cmawgoB0919

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G008730	Cucurbita pepo (Zucchini)	cmacpeB768
CmaCh05G008730	Cucurbita pepo (Zucchini)	cmacpeB781
CmaCh05G008730	Bottle gourd (USVL1VR-Ls)	cmalsiB716
CmaCh05G008730	Cucumber (Gy14) v2	cgybcmaB259
CmaCh05G008730	Cucumber (Gy14) v2	cgybcmaB693
CmaCh05G008730	Melon (DHL92) v3.6.1	cmamedB805
CmaCh05G008730	Silver-seed gourd	carcmaB0983
CmaCh05G008730	Cucumber (Chinese Long) v3	cmacucB0936
CmaCh05G008730	Cucumber (Chinese Long) v3	cmacucB0947
CmaCh05G008730	Watermelon (97103) v2	cmawmbB804
CmaCh05G008730	Wax gourd	cmawgoB0931
CmaCh05G008730	Cucurbita maxima (Rimu)	cmacmaB428
CmaCh05G008730	Cucumber (Gy14) v1	cgycmaB0016
CmaCh05G008730	Cucumber (Gy14) v1	cgycmaB0553
CmaCh05G008730	Cucurbita moschata (Rifu)	cmacmoB771
CmaCh05G008730	Cucurbita moschata (Rifu)	cmacmoB787
CmaCh05G008730	Cucurbita moschata (Rifu)	cmacmoB789
CmaCh05G008730	Wild cucumber (PI 183967)	cmacpiB802
CmaCh05G008730	Wild cucumber (PI 183967)	cmacpiB813
CmaCh05G008730	Cucumber (Chinese Long) v2	cmacuB793
CmaCh05G008730	Cucumber (Chinese Long) v2	cmacuB802
CmaCh05G008730	Watermelon (97103) v1	cmawmB771