CmaCh05G008660 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh05G008660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA/RNA polymerases superfamily protein
LocationCma_Chr05 : 6042149 .. 6043141 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAGAGCTTGTAAAAGATTACGACATAGACATCAATGCCACCTTGGAAAAGCAAACATAGTCGCTGATGCACTGAGTCGAAAAGCAGTACATTCGTCAGCCCTCATCACCAGGGAGCCACGAGTGCGAACTGATTCCGAACAGGTTGACATAGCGGTAGTAACTGAAGAAGTGGCAGCCAAAATAGCCCGACTGACAGAATGTCCCACGCTCAGACAAAGGATCATAGACTCACAACGTGGGGATCCAAGCTTAAGCAAAATCCTAGACCAATTGAAAGTAGGCTTAGTGGACGGATTCTCTAAGTCAACAGATGACGGATTGTTATGTCAAGGACGCTTATCTGTGCCACCCATGAGCAAAATGAAGAAGAAAATCTTAACTGAGGCACACAACTCACCCTTCTCGATACATCCAGGTGGAACAAAGATGCATCAAGATTTGAAACAACCCTTCTGGTGGCGAAGTATGAAAAAGGATATCGCGGAATACGTGAGTAAGTGTTTGGTGTGCCAACAAGTAAAAGCCCCTAGGCAGAAAACCGCCGGGCTACTACAACCTCTAAGTATACCGAAATGGAAATGGGAAAACATTGTCATGGATTTCATAATAGGCCAACCCAAAACATTAAAGGGCTATACGGTTATTTGGGTGGTCATGGATCGTCTGACAAAGTCGGCACATTTCCTACCGGGGAAGGCAACATATATGGTAGACAATTGGGCCCAACTGTACGTGAAGGAAATTGTGAGGTTGCATGGGGTACCGGTGTCAATTGTGTCGGATTGGGATCCGTGTTTCACATCGACCTTTTGGTGCGGACTCCAAAAAGCGATGGGTACCCGCCTCGACTTTAGCACCGCCTTCTACCCACAAACGGATGGCCAAACGGAACGATTAAACCAAATCCTGGAAGATATGCTTCGGGCATGCATTATGGATTTCACAGGGAGTTGGGACACTAAACTGCACTTAATGGAATTCTTATAA

mRNA sequence

ATGGTCAGAGCTTGTAAAAGATTACGACATAGACATCAATGCCACCTTGGAAAAGCAAACATAGTCGCTGATGCACTGAGTCGAAAAGCAGTACATTCGTCAGCCCTCATCACCAGGGAGCCACGAGTGCGAACTGATTCCGAACAGGTTGACATAGCGGTAGTAACTGAAGAAGTGGCAGCCAAAATAGCCCGACTGACAGAATGTCCCACGCTCAGACAAAGGATCATAGACTCACAACGTGGGGATCCAAGCTTAAGCAAAATCCTAGACCAATTGAAAGTAGGCTTAGTGGACGGATTCTCTAAGTCAACAGATGACGGATTGTTATGTCAAGGACGCTTATCTGTGCCACCCATGAGCAAAATGAAGAAGAAAATCTTAACTGAGGCACACAACTCACCCTTCTCGATACATCCAGGTGGAACAAAGATGCATCAAGATTTGAAACAACCCTTCTGGTGGCGAAGTATGAAAAAGGATATCGCGGAATACGTGAGTAAGTGTTTGGTGTGCCAACAAGTAAAAGCCCCTAGGCAGAAAACCGCCGGGCTACTACAACCTCTAAGTATACCGAAATGGAAATGGGAAAACATTGTCATGGATTTCATAATAGGCCAACCCAAAACATTAAAGGGCTATACGGTTATTTGGGTGGTCATGGATCGTCTGACAAAGTCGGCACATTTCCTACCGGGGAAGGCAACATATATGGTAGACAATTGGGCCCAACTGTACGTGAAGGAAATTGTGAGGTTGCATGGGGTACCGGTGTCAATTGTGTCGGATTGGGATCCGTGTTTCACATCGACCTTTTGGTGCGGACTCCAAAAAGCGATGGGTACCCGCCTCGACTTTAGCACCGCCTTCTACCCACAAACGGATGGCCAAACGGAACGATTAAACCAAATCCTGGAAGATATGCTTCGGGCATGCATTATGGATTTCACAGGGAGTTGGGACACTAAACTGCACTTAATGGAATTCTTATAA

Coding sequence (CDS)

ATGGTCAGAGCTTGTAAAAGATTACGACATAGACATCAATGCCACCTTGGAAAAGCAAACATAGTCGCTGATGCACTGAGTCGAAAAGCAGTACATTCGTCAGCCCTCATCACCAGGGAGCCACGAGTGCGAACTGATTCCGAACAGGTTGACATAGCGGTAGTAACTGAAGAAGTGGCAGCCAAAATAGCCCGACTGACAGAATGTCCCACGCTCAGACAAAGGATCATAGACTCACAACGTGGGGATCCAAGCTTAAGCAAAATCCTAGACCAATTGAAAGTAGGCTTAGTGGACGGATTCTCTAAGTCAACAGATGACGGATTGTTATGTCAAGGACGCTTATCTGTGCCACCCATGAGCAAAATGAAGAAGAAAATCTTAACTGAGGCACACAACTCACCCTTCTCGATACATCCAGGTGGAACAAAGATGCATCAAGATTTGAAACAACCCTTCTGGTGGCGAAGTATGAAAAAGGATATCGCGGAATACGTGAGTAAGTGTTTGGTGTGCCAACAAGTAAAAGCCCCTAGGCAGAAAACCGCCGGGCTACTACAACCTCTAAGTATACCGAAATGGAAATGGGAAAACATTGTCATGGATTTCATAATAGGCCAACCCAAAACATTAAAGGGCTATACGGTTATTTGGGTGGTCATGGATCGTCTGACAAAGTCGGCACATTTCCTACCGGGGAAGGCAACATATATGGTAGACAATTGGGCCCAACTGTACGTGAAGGAAATTGTGAGGTTGCATGGGGTACCGGTGTCAATTGTGTCGGATTGGGATCCGTGTTTCACATCGACCTTTTGGTGCGGACTCCAAAAAGCGATGGGTACCCGCCTCGACTTTAGCACCGCCTTCTACCCACAAACGGATGGCCAAACGGAACGATTAAACCAAATCCTGGAAGATATGCTTCGGGCATGCATTATGGATTTCACAGGGAGTTGGGACACTAAACTGCACTTAATGGAATTCTTATAA

Protein sequence

MVRACKRLRHRHQCHLGKANIVADALSRKAVHSSALITREPRVRTDSEQVDIAVVTEEVAAKIARLTECPTLRQRIIDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGRLSVPPMSKMKKKILTEAHNSPFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSIPKWKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEIVRLHGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLRACIMDFTGSWDTKLHLMEFL
Homology
[Close]
BLAST of CmaCh05G008660 vs. Swiss-Prot
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-32
Identity = 88/314 (28.03%), Postives = 148/314 (47.13%), Query Frame = 1 

Query: 17   GKANIVADALSRKAVHSSALITREPRVRTDSEQVDIAVVTEEVAAKIARLTECPTLRQRI 76
            G AN +ADALSR       ++     +  DSE   I  V +        ++     + ++
Sbjct: 820  GSANHIADALSR-------IVDETEPIPKDSEDNSINFVNQ--------ISITDDFKNQV 879

Query: 77   IDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGR--LSVPPMSKMKKKILTEAHNS 136
            +     D  L  +L+     + +       DGLL   +  + +P  +++ + I+ + H  
Sbjct: 880  VTEYTNDTKLLNLLNNEDKRVEENIQLK--DGLLINSKDQILLPNDTQLTRTIIKKYHEE 939

Query: 137  PFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSIPKW 196
               IHPG   +   + + F W+ ++K I EYV  C  CQ  K+   K  G LQP+   + 
Sbjct: 940  GKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSER 999

Query: 197  KWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEIVRLH 256
             WE++ MDFI   P++  GY  ++VV+DR +K A  +P   +   +  A+++ + ++   
Sbjct: 1000 PWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYF 1059

Query: 257  GVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLRACIM 316
            G P  I++D D  FTS  W          + FS  + PQTDGQTER NQ +E +LR    
Sbjct: 1060 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1115

Query: 317  DFTGSWDTKLHLME 329
                +W   + L++
Sbjct: 1120 THPNTWVDHISLVQ 1115

[Close]
BLAST of CmaCh05G008660 vs. Swiss-Prot
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-32
Identity = 88/314 (28.03%), Postives = 148/314 (47.13%), Query Frame = 1 

Query: 17   GKANIVADALSRKAVHSSALITREPRVRTDSEQVDIAVVTEEVAAKIARLTECPTLRQRI 76
            G AN +ADALSR       ++     +  DSE   I  V +        ++     + ++
Sbjct: 820  GSANHIADALSR-------IVDETEPIPKDSEDNSINFVNQ--------ISITDDFKNQV 879

Query: 77   IDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGR--LSVPPMSKMKKKILTEAHNS 136
            +     D  L  +L+     + +       DGLL   +  + +P  +++ + I+ + H  
Sbjct: 880  VTEYTNDTKLLNLLNNEDKRVEENIQLK--DGLLINSKDQILLPNDTQLTRTIIKKYHEE 939

Query: 137  PFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSIPKW 196
               IHPG   +   + + F W+ ++K I EYV  C  CQ  K+   K  G LQP+   + 
Sbjct: 940  GKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSER 999

Query: 197  KWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEIVRLH 256
             WE++ MDFI   P++  GY  ++VV+DR +K A  +P   +   +  A+++ + ++   
Sbjct: 1000 PWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYF 1059

Query: 257  GVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLRACIM 316
            G P  I++D D  FTS  W          + FS  + PQTDGQTER NQ +E +LR    
Sbjct: 1060 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1115

Query: 317  DFTGSWDTKLHLME 329
                +W   + L++
Sbjct: 1120 THPNTWVDHISLVQ 1115

[Close]
BLAST of CmaCh05G008660 vs. Swiss-Prot
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-32
Identity = 88/314 (28.03%), Postives = 148/314 (47.13%), Query Frame = 1 

Query: 17   GKANIVADALSRKAVHSSALITREPRVRTDSEQVDIAVVTEEVAAKIARLTECPTLRQRI 76
            G AN +ADALSR       ++     +  DSE   I  V +        ++     + ++
Sbjct: 820  GSANHIADALSR-------IVDETEPIPKDSEDNSINFVNQ--------ISITDDFKNQV 879

Query: 77   IDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGR--LSVPPMSKMKKKILTEAHNS 136
            +     D  L  +L+     + +       DGLL   +  + +P  +++ + I+ + H  
Sbjct: 880  VTEYTNDTKLLNLLNNEDKRVEENIQLK--DGLLINSKDQILLPNDTQLTRTIIKKYHEE 939

Query: 137  PFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSIPKW 196
               IHPG   +   + + F W+ ++K I EYV  C  CQ  K+   K  G LQP+   + 
Sbjct: 940  GKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSER 999

Query: 197  KWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEIVRLH 256
             WE++ MDFI   P++  GY  ++VV+DR +K A  +P   +   +  A+++ + ++   
Sbjct: 1000 PWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYF 1059

Query: 257  GVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLRACIM 316
            G P  I++D D  FTS  W          + FS  + PQTDGQTER NQ +E +LR    
Sbjct: 1060 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1115

Query: 317  DFTGSWDTKLHLME 329
                +W   + L++
Sbjct: 1120 THPNTWVDHISLVQ 1115

[Close]
BLAST of CmaCh05G008660 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-32
Identity = 88/314 (28.03%), Postives = 148/314 (47.13%), Query Frame = 1 

Query: 17   GKANIVADALSRKAVHSSALITREPRVRTDSEQVDIAVVTEEVAAKIARLTECPTLRQRI 76
            G AN +ADALSR       ++     +  DSE   I  V +        ++     + ++
Sbjct: 820  GSANHIADALSR-------IVDETEPIPKDSEDNSINFVNQ--------ISITDDFKNQV 879

Query: 77   IDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGR--LSVPPMSKMKKKILTEAHNS 136
            +     D  L  +L+     + +       DGLL   +  + +P  +++ + I+ + H  
Sbjct: 880  VTEYTNDTKLLNLLNNEDKRVEENIQLK--DGLLINSKDQILLPNDTQLTRTIIKKYHEE 939

Query: 137  PFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSIPKW 196
               IHPG   +   + + F W+ ++K I EYV  C  CQ  K+   K  G LQP+   + 
Sbjct: 940  GKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSER 999

Query: 197  KWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEIVRLH 256
             WE++ MDFI   P++  GY  ++VV+DR +K A  +P   +   +  A+++ + ++   
Sbjct: 1000 PWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYF 1059

Query: 257  GVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLRACIM 316
            G P  I++D D  FTS  W          + FS  + PQTDGQTER NQ +E +LR    
Sbjct: 1060 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1115

Query: 317  DFTGSWDTKLHLME 329
                +W   + L++
Sbjct: 1120 THPNTWVDHISLVQ 1115

[Close]
BLAST of CmaCh05G008660 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-32
Identity = 88/314 (28.03%), Postives = 148/314 (47.13%), Query Frame = 1 

Query: 17   GKANIVADALSRKAVHSSALITREPRVRTDSEQVDIAVVTEEVAAKIARLTECPTLRQRI 76
            G AN +ADALSR       ++     +  DSE   I  V +        ++     + ++
Sbjct: 820  GSANHIADALSR-------IVDETEPIPKDSEDNSINFVNQ--------ISITDDFKNQV 879

Query: 77   IDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGR--LSVPPMSKMKKKILTEAHNS 136
            +     D  L  +L+     + +       DGLL   +  + +P  +++ + I+ + H  
Sbjct: 880  VTEYTNDTKLLNLLNNEDKRVEENIQLK--DGLLINSKDQILLPNDTQLTRTIIKKYHEE 939

Query: 137  PFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSIPKW 196
               IHPG   +   + + F W+ ++K I EYV  C  CQ  K+   K  G LQP+   + 
Sbjct: 940  GKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSER 999

Query: 197  KWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEIVRLH 256
             WE++ MDFI   P++  GY  ++VV+DR +K A  +P   +   +  A+++ + ++   
Sbjct: 1000 PWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYF 1059

Query: 257  GVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLRACIM 316
            G P  I++D D  FTS  W          + FS  + PQTDGQTER NQ +E +LR    
Sbjct: 1060 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1115

Query: 317  DFTGSWDTKLHLME 329
                +W   + L++
Sbjct: 1120 THPNTWVDHISLVQ 1115

[Close]
BLAST of CmaCh05G008660 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 9.5e-113
Identity = 207/319 (64.89%), Postives = 249/319 (78.06%), Query Frame = 1 

Query: 15  HLGKANIVADALSRKAVHSSALITREPRVRTDSEQVDIAVVTEEVAAKIARLTECPTLRQ 74
           H GKAN+VADALSRK  HS+ALITR+  +  D E+ +IAV+   V  ++A+LT  PTLRQ
Sbjct: 390 HPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQ 449

Query: 75  RIIDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGRLSVPPMSKMKKKILTEAHNS 134
           RIID+Q  DP L +     + G    FS S+D GLL + RL VP  S +K ++L+EAH+S
Sbjct: 450 RIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSS 509

Query: 135 PFSIHPGGTKMHQDLKQP----FWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLS 194
           PFS+HPG T   +D+  P       R+MK+++AE+VSKCLVCQQVKAPRQK AGLLQPLS
Sbjct: 510 PFSMHPGST---EDVSGPEAGFIGGRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS 569

Query: 195 IPKWKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEI 254
           IP+WKWEN+ MDFI G P+TL+G+TVIWVV+DRLTKSAHF+PGK+TY    WAQLY+ EI
Sbjct: 570 IPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEI 629

Query: 255 VRLHGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLR 314
           VRLHGVPVSIVSD D  FTS FW GLQ AMGTRLDFSTAF+PQTDGQTERLNQ+LEDMLR
Sbjct: 630 VRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLR 689

Query: 315 ACIMDFTGSWDTKLHLMEF 330
           AC ++F GSWD+ LHLMEF
Sbjct: 690 ACALEFPGSWDSHLHLMEF 705

[Close]
BLAST of CmaCh05G008660 vs. TrEMBL
Match: E5GCE2_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 1.0e-98
Identity = 177/276 (64.13%), Postives = 217/276 (78.62%), Query Frame = 1 

Query: 54   VVTEEVAAKIARLTECPTLRQRIIDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQG 113
            VV + ++ K+A+LT  PTLRQ+IID+Q  +P L       + G    FS S+D GLL + 
Sbjct: 817  VVADALSRKLAQLTVQPTLRQKIIDAQSNNPYLVGKRGLAETGQAVEFSISSDGGLLFER 876

Query: 114  RLSVPPMSKMKKKILTEAHNSPFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQ 173
            RL VP  S +K ++L+EAH+SPFS+H G TKM+Q LK+ +WW ++K+++AE+VSKCLVCQ
Sbjct: 877  RLYVPSDSAVKTELLSEAHSSPFSMHSGSTKMYQHLKRVYWWSNIKREVAEFVSKCLVCQ 936

Query: 174  QVKAPRQKTAGLLQPLSIPKWKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPG 233
            QVKAPRQK  GLLQPLS+PKWKWEN+ MDFI G P+TL+G+TVIWVV+DRLTKSAHF+ G
Sbjct: 937  QVKAPRQKPTGLLQPLSVPKWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFIQG 996

Query: 234  KATYMVDNWAQLYVKEIVRLHGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQ 293
            K+TY    WAQLY+ EIVRLHGVPVSIVS+ D  FTS F  GLQ AMGTRLDFST F+PQ
Sbjct: 997  KSTYTASKWAQLYMSEIVRLHGVPVSIVSNRDARFTSKFLKGLQAAMGTRLDFSTTFHPQ 1056

Query: 294  TDGQTERLNQILEDMLRACIMDFTGSWDTKLHLMEF 330
            TD QTERLNQ+LEDMLRA  + F GSWD+ LHLMEF
Sbjct: 1057 TDCQTERLNQVLEDMLRAYALGFPGSWDSHLHLMEF 1092

[Close]
BLAST of CmaCh05G008660 vs. TrEMBL
Match: A0A075T9N5_CAMSI (Gag-pol (Fragment) OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 9.6e-89
Identity = 161/318 (50.63%), Postives = 224/318 (70.44%), Query Frame = 1 

Query: 14  CHLGKANIVADALSRKAVHSSALIT-REPRVRTDSEQVDIAVVTEEVAAKIARLTECPTL 73
           CH GKAN+VADALSRK +   A I  RE  +     + D+ +     AA +  +   PTL
Sbjct: 389 CHPGKANVVADALSRKTISDVACIAIREWEMLGALGEFDLLLGESVEAAALFSVVAQPTL 448

Query: 74  RQRIIDSQRGDPSLSKILDQLKVGLVD-GFSKSTDDGLLCQGRLSVPPMSKMKKKILTEA 133
             R++++QRGD  +  + +++  G V+ G +   +  +  + RL VP     ++++L E 
Sbjct: 449 VTRVLEAQRGDLEIESLREKISSGKVEKGLTVYPEQSVRYRDRLFVP--ESCREEVLGEF 508

Query: 134 HNSPFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSI 193
           H+S  ++HPGGTKM+QDL + FWWR MK+D+A +VSKCL CQQVKA  Q+ AGLLQPL I
Sbjct: 509 HHSRLAVHPGGTKMYQDLGRQFWWRGMKRDVAVFVSKCLTCQQVKAEHQRPAGLLQPLPI 568

Query: 194 PKWKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEIV 253
            +WKWE+I MDF++G P+T +G   IWVV+DRLTKSAHF+P +    +D+ A LY++++V
Sbjct: 569 AEWKWEHITMDFVVGLPRTQRGSDAIWVVVDRLTKSAHFIPMRVRDSMDHLADLYIRDVV 628

Query: 254 RLHGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLRA 313
           RLHGVPV+IVSD DPCFT+  W  LQ A+GT+L FSTA++PQTDGQ+ER  QILEDMLR 
Sbjct: 629 RLHGVPVTIVSDRDPCFTARLWQSLQSALGTKLTFSTAYHPQTDGQSERTIQILEDMLRG 688

Query: 314 CIMDFTGSWDTKLHLMEF 330
           C++DF+G+W+  L L+EF
Sbjct: 689 CVLDFSGTWERHLPLVEF 704

[Close]
BLAST of CmaCh05G008660 vs. TrEMBL
Match: O64892_ANACO (Polyprotein (Fragment) OS=Ananas comosus PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 8.1e-88
Identity = 161/316 (50.95%), Postives = 216/316 (68.35%), Query Frame = 1 

Query: 15  HLGKANIVADALSRKAVHSSAL-ITREPRVRTDSEQVDIAVVTEEVAAKIARLTECPTLR 74
           H GKAN+VADALSRK++ + A+ +  +PR+    +++++ +VT +   ++  L   PTL 
Sbjct: 414 HPGKANVVADALSRKSMENLAMHVVTQPRLIEQMKRLELEIVTPDTPMRLMTLVVQPTLL 473

Query: 75  QRIIDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGRLSVPPMSKMKKKILTEAHN 134
            RI + Q  D  L KI  ++  G    F+   D  +  +GR+ VP  S +K+ IL EAH 
Sbjct: 474 DRIKEKQASDVELQKIKGKMVDGCTGDFTLDGDGLMRFRGRICVPADSGIKEDILQEAHR 533

Query: 135 SPFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSIPK 194
           +P++IHPGGTKM++DLK  +WW  +KKD+ E+V+KCL CQQVKA  +  AG LQ L IP 
Sbjct: 534 APYAIHPGGTKMYKDLKLLYWWPGIKKDVGEFVAKCLTCQQVKAEHRVPAGKLQSLPIPV 593

Query: 195 WKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEIVRL 254
           WKWE I MDF+ G P++  G+  IWV++DRLTKSAHF+P   T+  +  AQ+Y+ EIVRL
Sbjct: 594 WKWEKITMDFVTGLPRSQAGHDAIWVIVDRLTKSAHFIPIHTTWTGERLAQVYLDEIVRL 653

Query: 255 HGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLRACI 314
           HGVP SIVSD D  F S FW  LQ A+GTRLDFSTAF+PQ+DGQ+ER  Q LEDMLRAC+
Sbjct: 654 HGVPTSIVSDRDTRFVSHFWRSLQDALGTRLDFSTAFHPQSDGQSERTIQTLEDMLRACV 713

Query: 315 MDFTGSWDTKLHLMEF 330
           +DF G W   L + EF
Sbjct: 714 IDFQGGWSQHLPMAEF 729

[Close]
BLAST of CmaCh05G008660 vs. TrEMBL
Match: A0A061FWM3_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013057 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 3.1e-87
Identity = 172/319 (53.92%), Postives = 217/319 (68.03%), Query Frame = 1 

Query: 15  HLGKANIVADALSRKAVHSSA--LITREPRVRTDSEQVDIAVVTE--EVAAKIARLTECP 74
           H GKAN+VADALSRK++ S A   I R   VR      DI V  E  E  A +A     P
Sbjct: 520 HPGKANVVADALSRKSMGSLAHIFIGRRSLVREIHSLGDIGVRLEVAETNALLAHFRVRP 579

Query: 75  TLRQRIIDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGRLSVPPMSKMKKKILTE 134
            L  RI ++Q  D  + K L+  +      F+K TD  L    RL VP    ++++IL E
Sbjct: 580 ILMDRIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEE 639

Query: 135 AHNSPFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLS 194
           AH + + +HPG TKM+QDLK+ +WW  +K+D+AE+VSKCLVCQQVKA  QK AGLLQPL 
Sbjct: 640 AHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLP 699

Query: 195 IPKWKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEI 254
           +P+WKWE+I MDF+ G P+T  GY  IW+V+DRLTKSAHFLP K TY    +A++YV EI
Sbjct: 700 VPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEI 759

Query: 255 VRLHGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLR 314
           VRLHG+P+SIVSD    FTS FW  LQ+A+GT+LDFSTAF+PQTDGQ+ER  Q LEDMLR
Sbjct: 760 VRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLR 819

Query: 315 ACIMDFTGSWDTKLHLMEF 330
           AC++D    W+  L L+EF
Sbjct: 820 ACVIDLGVRWEQYLPLVEF 838

[Close]
BLAST of CmaCh05G008660 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 414.8 bits (1065), Expect = 1.4e-112
Identity = 207/319 (64.89%), Postives = 249/319 (78.06%), Query Frame = 1 

Query: 15  HLGKANIVADALSRKAVHSSALITREPRVRTDSEQVDIAVVTEEVAAKIARLTECPTLRQ 74
           H GKAN+VADALSRK  HS+ALITR+  +  D E+ +IAV+   V  ++A+LT  PTLRQ
Sbjct: 390 HPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQ 449

Query: 75  RIIDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGRLSVPPMSKMKKKILTEAHNS 134
           RIID+Q  DP L +     + G    FS S+D GLL + RL VP  S +K ++L+EAH+S
Sbjct: 450 RIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSS 509

Query: 135 PFSIHPGGTKMHQDLKQP----FWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLS 194
           PFS+HPG T   +D+  P       R+MK+++AE+VSKCLVCQQVKAPRQK AGLLQPLS
Sbjct: 510 PFSMHPGST---EDVSGPEAGFIGGRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS 569

Query: 195 IPKWKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEI 254
           IP+WKWEN+ MDFI G P+TL+G+TVIWVV+DRLTKSAHF+PGK+TY    WAQLY+ EI
Sbjct: 570 IPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEI 629

Query: 255 VRLHGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLR 314
           VRLHGVPVSIVSD D  FTS FW GLQ AMGTRLDFSTAF+PQTDGQTERLNQ+LEDMLR
Sbjct: 630 VRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLR 689

Query: 315 ACIMDFTGSWDTKLHLMEF 330
           AC ++F GSWD+ LHLMEF
Sbjct: 690 ACALEFPGSWDSHLHLMEF 705

[Close]
BLAST of CmaCh05G008660 vs. NCBI nr
Match: gi|307136318|gb|ADN34141.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 368.2 bits (944), Expect = 1.5e-98
Identity = 177/276 (64.13%), Postives = 217/276 (78.62%), Query Frame = 1 

Query: 54   VVTEEVAAKIARLTECPTLRQRIIDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQG 113
            VV + ++ K+A+LT  PTLRQ+IID+Q  +P L       + G    FS S+D GLL + 
Sbjct: 817  VVADALSRKLAQLTVQPTLRQKIIDAQSNNPYLVGKRGLAETGQAVEFSISSDGGLLFER 876

Query: 114  RLSVPPMSKMKKKILTEAHNSPFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQ 173
            RL VP  S +K ++L+EAH+SPFS+H G TKM+Q LK+ +WW ++K+++AE+VSKCLVCQ
Sbjct: 877  RLYVPSDSAVKTELLSEAHSSPFSMHSGSTKMYQHLKRVYWWSNIKREVAEFVSKCLVCQ 936

Query: 174  QVKAPRQKTAGLLQPLSIPKWKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPG 233
            QVKAPRQK  GLLQPLS+PKWKWEN+ MDFI G P+TL+G+TVIWVV+DRLTKSAHF+ G
Sbjct: 937  QVKAPRQKPTGLLQPLSVPKWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFIQG 996

Query: 234  KATYMVDNWAQLYVKEIVRLHGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQ 293
            K+TY    WAQLY+ EIVRLHGVPVSIVS+ D  FTS F  GLQ AMGTRLDFST F+PQ
Sbjct: 997  KSTYTASKWAQLYMSEIVRLHGVPVSIVSNRDARFTSKFLKGLQAAMGTRLDFSTTFHPQ 1056

Query: 294  TDGQTERLNQILEDMLRACIMDFTGSWDTKLHLMEF 330
            TD QTERLNQ+LEDMLRA  + F GSWD+ LHLMEF
Sbjct: 1057 TDCQTERLNQVLEDMLRAYALGFPGSWDSHLHLMEF 1092

[Close]
BLAST of CmaCh05G008660 vs. NCBI nr
Match: gi|667481456|gb|AIG55302.1| (gag-pol, partial [Camellia sinensis])

HSP 1 Score: 335.1 bits (858), Expect = 1.4e-88
Identity = 161/318 (50.63%), Postives = 224/318 (70.44%), Query Frame = 1 

Query: 14  CHLGKANIVADALSRKAVHSSALIT-REPRVRTDSEQVDIAVVTEEVAAKIARLTECPTL 73
           CH GKAN+VADALSRK +   A I  RE  +     + D+ +     AA +  +   PTL
Sbjct: 389 CHPGKANVVADALSRKTISDVACIAIREWEMLGALGEFDLLLGESVEAAALFSVVAQPTL 448

Query: 74  RQRIIDSQRGDPSLSKILDQLKVGLVD-GFSKSTDDGLLCQGRLSVPPMSKMKKKILTEA 133
             R++++QRGD  +  + +++  G V+ G +   +  +  + RL VP     ++++L E 
Sbjct: 449 VTRVLEAQRGDLEIESLREKISSGKVEKGLTVYPEQSVRYRDRLFVP--ESCREEVLGEF 508

Query: 134 HNSPFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSI 193
           H+S  ++HPGGTKM+QDL + FWWR MK+D+A +VSKCL CQQVKA  Q+ AGLLQPL I
Sbjct: 509 HHSRLAVHPGGTKMYQDLGRQFWWRGMKRDVAVFVSKCLTCQQVKAEHQRPAGLLQPLPI 568

Query: 194 PKWKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEIV 253
            +WKWE+I MDF++G P+T +G   IWVV+DRLTKSAHF+P +    +D+ A LY++++V
Sbjct: 569 AEWKWEHITMDFVVGLPRTQRGSDAIWVVVDRLTKSAHFIPMRVRDSMDHLADLYIRDVV 628

Query: 254 RLHGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLRA 313
           RLHGVPV+IVSD DPCFT+  W  LQ A+GT+L FSTA++PQTDGQ+ER  QILEDMLR 
Sbjct: 629 RLHGVPVTIVSDRDPCFTARLWQSLQSALGTKLTFSTAYHPQTDGQSERTIQILEDMLRG 688

Query: 314 CIMDFTGSWDTKLHLMEF 330
           C++DF+G+W+  L L+EF
Sbjct: 689 CVLDFSGTWERHLPLVEF 704

[Close]
BLAST of CmaCh05G008660 vs. NCBI nr
Match: gi|828337339|ref|XP_012567311.1| (PREDICTED: uncharacterized protein LOC105851235 [Cicer arietinum])

HSP 1 Score: 332.8 bits (852), Expect = 6.8e-88
Identity = 164/319 (51.41%), Postives = 221/319 (69.28%), Query Frame = 1 

Query: 15  HLGKANIVADALSRKAVHSSALITR--EPRVRTDSEQVDIAVVTEEVAAKI--ARLTECP 74
           H GKAN+VADALSRK++ S A I     P V+   + V+  +  E   +++  A +    
Sbjct: 580 HPGKANVVADALSRKSMGSLAHIAEVNRPIVKEFQKVVESGIQLELGHSRLFLAHVQIRS 639

Query: 75  TLRQRIIDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGRLSVPPMSKMKKKILTE 134
           T+   I ++Q  DP L  +++ ++ G +  FS  +D  L  + RL VP +  +++KIL E
Sbjct: 640 TIVDDIKEAQSQDPYLVNMVNNVQNGKISDFSVDSDGVLRLKARLCVPNVGGLRRKILEE 699

Query: 135 AHNSPFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLS 194
           AH+S ++IHPG  KM+QDL++ +WW  MK+D+A++VS+CLVCQQVKA  QK AGLLQP+ 
Sbjct: 700 AHHSSYTIHPGSNKMYQDLRELYWWEGMKRDVADFVSRCLVCQQVKAEHQKPAGLLQPVE 759

Query: 195 IPKWKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEI 254
           IP+WKWE I MDF+ G P+T KGY  +WV++DRLTKSAHFLP K TY    +A+LY+ +I
Sbjct: 760 IPEWKWEGIAMDFVTGLPRTQKGYDSVWVIIDRLTKSAHFLPVKTTYTASQYAKLYLDKI 819

Query: 255 VRLHGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLR 314
           V LHGVPVSI+SD    FT+ FW   Q ++GTRL  STAF+PQTDGQ+ER  QILEDM R
Sbjct: 820 VSLHGVPVSIISDRGAQFTAQFWKSFQTSLGTRLKLSTAFHPQTDGQSERTIQILEDMFR 879

Query: 315 ACIMDFTGSWDTKLHLMEF 330
           AC++D  GSWD  L LMEF
Sbjct: 880 ACVLDLGGSWDQHLPLMEF 898

[Close]
BLAST of CmaCh05G008660 vs. NCBI nr
Match: gi|2995405|emb|CAA73042.1| (polyprotein [Ananas comosus])

HSP 1 Score: 332.0 bits (850), Expect = 1.2e-87
Identity = 161/316 (50.95%), Postives = 216/316 (68.35%), Query Frame = 1 

Query: 15  HLGKANIVADALSRKAVHSSAL-ITREPRVRTDSEQVDIAVVTEEVAAKIARLTECPTLR 74
           H GKAN+VADALSRK++ + A+ +  +PR+    +++++ +VT +   ++  L   PTL 
Sbjct: 414 HPGKANVVADALSRKSMENLAMHVVTQPRLIEQMKRLELEIVTPDTPMRLMTLVVQPTLL 473

Query: 75  QRIIDSQRGDPSLSKILDQLKVGLVDGFSKSTDDGLLCQGRLSVPPMSKMKKKILTEAHN 134
            RI + Q  D  L KI  ++  G    F+   D  +  +GR+ VP  S +K+ IL EAH 
Sbjct: 474 DRIKEKQASDVELQKIKGKMVDGCTGDFTLDGDGLMRFRGRICVPADSGIKEDILQEAHR 533

Query: 135 SPFSIHPGGTKMHQDLKQPFWWRSMKKDIAEYVSKCLVCQQVKAPRQKTAGLLQPLSIPK 194
           +P++IHPGGTKM++DLK  +WW  +KKD+ E+V+KCL CQQVKA  +  AG LQ L IP 
Sbjct: 534 APYAIHPGGTKMYKDLKLLYWWPGIKKDVGEFVAKCLTCQQVKAEHRVPAGKLQSLPIPV 593

Query: 195 WKWENIVMDFIIGQPKTLKGYTVIWVVMDRLTKSAHFLPGKATYMVDNWAQLYVKEIVRL 254
           WKWE I MDF+ G P++  G+  IWV++DRLTKSAHF+P   T+  +  AQ+Y+ EIVRL
Sbjct: 594 WKWEKITMDFVTGLPRSQAGHDAIWVIVDRLTKSAHFIPIHTTWTGERLAQVYLDEIVRL 653

Query: 255 HGVPVSIVSDWDPCFTSTFWCGLQKAMGTRLDFSTAFYPQTDGQTERLNQILEDMLRACI 314
           HGVP SIVSD D  F S FW  LQ A+GTRLDFSTAF+PQ+DGQ+ER  Q LEDMLRAC+
Sbjct: 654 HGVPTSIVSDRDTRFVSHFWRSLQDALGTRLDFSTAFHPQSDGQSERTIQTLEDMLRACV 713

Query: 315 MDFTGSWDTKLHLMEF 330
           +DF G W   L + EF
Sbjct: 714 IDFQGGWSQHLPMAEF 729

The following BLAST results are available for this feature:
BLAST of CmaCh05G008660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TF28_SCHPO1.1e-3228.03Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF23_SCHPO1.1e-3228.03Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF22_SCHPO1.1e-3228.03Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF21_SCHPO1.1e-3228.03Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF212_SCHPO1.1e-3228.03Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
BLAST of CmaCh05G008660 vs. TrEMBL
Match NameE-valueIdentityDescription
Q84KB0_CUCME9.5e-11364.89Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCE2_CUCME1.0e-9864.13Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A075T9N5_CAMSI9.6e-8950.63Gag-pol (Fragment) OS=Camellia sinensis PE=2 SV=1[more]
O64892_ANACO8.1e-8850.95Polyprotein (Fragment) OS=Ananas comosus PE=4 SV=1[more]
A0A061FWM3_THECC3.1e-8753.92DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013057 PE=4 SV... [more]
BLAST of CmaCh05G008660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh05G008660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|28558781|gb|AAO45752.1|1.4e-11264.89pol protein [Cucumis melo subsp. melo][more]
gi|307136318|gb|ADN34141.1|1.5e-9864.13ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|667481456|gb|AIG55302.1|1.4e-8850.63gag-pol, partial [Camellia sinensis][more]
gi|828337339|ref|XP_012567311.1|6.8e-8851.41PREDICTED: uncharacterized protein LOC105851235 [Cicer arietinum][more]
gi|2995405|emb|CAA73042.1|1.2e-8750.95polyprotein [Ananas comosus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003677 DNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G008660.1CmaCh05G008660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 199..308
score: 1.
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 188..330
score: 13
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 189..318
score: 5.7
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 189..328
score: 2.09
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 15..34
score: 3.1E-123coord: 70..329
score: 3.1E
NoneNo IPR availablePANTHERPTHR24559:SF207SUBFAMILY NOT NAMEDcoord: 70..329
score: 3.1E-123coord: 15..34
score: 3.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh05G008660CmoCh12G006910Cucurbita moschata (Rifu)cmacmoB771
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh05G008660Cucurbita maxima (Rimu)cmacmaB428
CmaCh05G008660Cucumber (Gy14) v1cgycmaB0016
CmaCh05G008660Cucumber (Gy14) v1cgycmaB0553
CmaCh05G008660Cucurbita moschata (Rifu)cmacmoB781
CmaCh05G008660Cucurbita moschata (Rifu)cmacmoB787
CmaCh05G008660Cucurbita moschata (Rifu)cmacmoB789
CmaCh05G008660Wild cucumber (PI 183967)cmacpiB802
CmaCh05G008660Wild cucumber (PI 183967)cmacpiB813
CmaCh05G008660Cucumber (Chinese Long) v2cmacuB793
CmaCh05G008660Cucumber (Chinese Long) v2cmacuB802
CmaCh05G008660Melon (DHL92) v3.5.1cmameB736
CmaCh05G008660Watermelon (97103) v1cmawmB771
CmaCh05G008660Cucurbita pepo (Zucchini)cmacpeB768
CmaCh05G008660Cucurbita pepo (Zucchini)cmacpeB781
CmaCh05G008660Bottle gourd (USVL1VR-Ls)cmalsiB716
CmaCh05G008660Cucumber (Gy14) v2cgybcmaB259
CmaCh05G008660Cucumber (Gy14) v2cgybcmaB693
CmaCh05G008660Melon (DHL92) v3.6.1cmamedB830
CmaCh05G008660Melon (DHL92) v3.6.1cmamedB805
CmaCh05G008660Silver-seed gourdcarcmaB0983
CmaCh05G008660Cucumber (Chinese Long) v3cmacucB0936
CmaCh05G008660Cucumber (Chinese Long) v3cmacucB0947
CmaCh05G008660Watermelon (97103) v2cmawmbB804
CmaCh05G008660Wax gourdcmawgoB0919
CmaCh05G008660Wax gourdcmawgoB0931