CmaCh05G007910 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G007910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	NAD(P)H-quinone oxidoreductase subunit 1
Location	Cma_Chr05 : 4862373 .. 4866510 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGACTACTGTATTGGGAATCACAATCGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGCCGGGATACAACAACGTATTGGACCTGAATATGCTGGTCCTTTGGGAGTTCTTCAAGCTTTAGCAGATGGCACAAAACTACTTTTTAAAGAAAATCTGCTTCCATCTAGAGGTGATACGCGTTTATTCAGTATCGGACCATCCATAGCAGTCATATCAATTTTACTAAGCTATTCAGTAATTCCTTTTGGTTATCGCCTTGTTTTAGCAGATCTGCAGATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCCATCGGCCTTCTTATGTCAGGATATTGATCCAATATATGGACTCATGAAAGTATCTGAGTGCTCGAGCATTCAATCACTATTATATTGAATGGATAATTGGTTTTTTTTAGTTGAATCTTAAAAAAAGGAACTTCTTTCTTTTTGATAAGCTCTAGAAAAATAAAATCATAAGAATAAATACCAAATTAATCAAAGATATCAAGAAAAAAGCTATCCTTATAAGAGAGTTTTGTTGAATCCATTGCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTGTAAAACAGTAAAAAAAAGTGTTTAAAATTGAAACTCTAGTTTTCGACATTCTATTCTAAATCATCAAGGTTGATCATTCACCAAGAAAATTTCGAAAAACATCAATATTACTCAGTATTTTTAGCACGTGCTTCAAAAGTCCCGAATTAGGTTTTTCGAAATTCTCTTGGGGAATGATCAACCTTGATGATTTACAATATAGTCGAAGAAAAAAGGAGGGTATAAAACAGTAAAAAAGTTTTTAAAATCGGAACCCCAATTTTATTACCATTTCCAACATTTTCGGCCCTTCTAAAGTTGTTTTTGACCTTATTGAAGGCATTTTAAGTCGGTAAGACTCCTATTTGCTCAAATTTAATATTTTTTTAGCTAAAACTAAGAGTAATCAATCTGTTTAGCTAAACTAAGTTTAATAATATGTCCTAAGAACACCTATAAAATAGTTTGGAAATCAAGGCTAAACAAGTAAGTGACTCTACTTTTGTTGGTTGGAAGGATTGTATGACGAAGCATGGGTGTCACAGAATTAGGAATGTTATGCTATTTTAAGCATGTTATGTGATGACCTATTATGCCATGTTATGAATGTGTGTGACGCTATGCTACGTCATGATATGTAATGCCATGTGAAGCCATGTTATGAATGTGTGTGATATAAGTCATGATAAGTACTATTCATACATGATTCATGTGTACTATGACATGAATGAAAAGAAAAAAGAAATGATTCTTATTATATGCTATGATTTTAAGTTATGGGGACCTCATGCATTTATCAATGTTATGTGCATTAGGATATTTCCTCGTTATGTTATGTTATGTTATGTTAGTACAGACGCGTACCTTCGATATTTTTGTTCATTATCATATCATGTGAGCCTTTCACTCTATGGTGTTGGGCGACGCATTAGCGTGTTTAGCTCGATGAAGGAGACCCAGGAGTACGTATACGAGTCCGCCTGCTAGGTCCATGTGTGTATGCGTGAGCCGTGTATGAGGAAGTACCACACATCCAACCCTACCTAAACTTGAAAGAACTCAAGCTCATGATACGTTGTTTTAAAAGATAGGTTTCATCATGTATGTGTATGTTACATTACCTGACTCCAACAATGAGGTTACTTACTTGAGTATTTACTAAAATACTCAAACAACATGCTACCCTTATTTTTCAGGTAAAGGTAAAGCGTCCATACACGGATAACGATGAATGCTGGAATGGTCATGAAAGCTGAGATAGGACAGTCGTATGCATTGTTTTCAATTAATAGTTCCATATGTAGCTTTTCATTTTCATACTAAAAATCTATGTTAATGTTTTATTTTGACGATGTTATTATTTTTATTTATTGTTTTAAATTAAACATATAAGTTCATGGCTTGGTTTAAAATGTTTTATTTAGATTTTCGCATATGTTATTAAAGGCATGCATGTTATGACGTCTCTGATCTAGGTAAGAAAAGTTCATTATTATTAATGATTATATTTATATTAATGAATGAAAGTAATTTTAAGCTAGGTTTTTAATTCTATCGCAAACTAATTTACTTTAGGAATAATCTTGATATTTTACTATTTTCCACTTTCTAAAACAAAAGATTATCGGTAATGCCCCTAATTTTTTTAGGTTAATTAGTGACGTTACCCTAGCATGCTTTAATCACATATGCAAAATTCATAATAAATACTTTTAAAATAAAGTCATTGAGTTAATGTTATTGTCCTATCATGATCTATCCTAACTTCCATAGCCTTTCCAGTTTTCACAGTCATTCGTGCATGAGAGTTTTGCCTTTACTTAAAAAATATAAGGTAACATGTGATTTGAGTATTTTAAGAAATTCTCGGTAAGTCAATCTACTATTGGAGCTAGCAATGCAGTCACACACAATACATGATTGAGATCTATCTTTTAAAATCGTAACATGACCTTAGGCTCTTTCTAGTTTCGGATAGGATTTGATGCATGGTACTTTTTCACTCACGGCCCACGTACACACTCAAGGACCCACTAGGCGGGCTCCTATACGTACCCCTTGGGCCTAACTTGGTTGGGACAAAATAGTACACGTCACAGGATGCCTCAGAAAAGGAAAGACCCACATGATATCATGACAAACATAAATATCGAAAGTACGCATTCGTACTAGCATAACATTACGGGGGAGTATCTTGATGTACATGACATACATACATGCATGAGGTCCCATGATTTTCATTCCTAACGTAATAGTTGTTTCATTTCGTTTCTCTTTTCCTCCATAACATATTTCATATATGGATCATGTATACATGGTATATATCACGTGATCCATCACATAACTTATATGGTAAGACATAACATTTCATACATGACATTTCATTTCATTCATAATATAGTGTAATGGATATCACATGCATACATGGCAATACAAAGAGCATATAAGCATCACATAATTAATATGATGCATGCACCATCATAAATCAACCAATTAGCTAACTCCAACAGTAAAACCACTTATAAGGTTGGCCTTGGCCGAAGTTACTAATTACTCGATAGCCGCTTCGAAAACTATGTTCCAATGTTAATTCTCACCTATATCAATTCATAAAACATGCTTAGAGCATATAAACCTCTTAGCCTAACTAAACATGATGATTATTTCTAACCTAAGTCCTACAACTAACTAAATTTGGATAAATAGAACTCTTACTTTTCTCAAATTCCTTGAATAAGGTAAAAATGGTTTTAGAAAGATCCAAAACTTAAGAAATGGTACATAATTTTTAAACGAGCCGTCTAAGCTGAGAAGCAGAGTCTATTGCGCCGCCAAGCCGCGTCAACGCGGGAATGAGGCGGGTCATTATTCAAGTTAACCGCGGGCTATATGGGTTGGGTTGAGGCACACTTGGCTGATACGTTCCGAGCTGGACTGCATGTATTGGGTTGTGGGCGTTGTAGAAGTGTGGTTCACCTATAGCAGAGGCCCGAGAGCGATATGACAACCTAAAATCCAAAGATTTGTCTCCCTTACCCGCCCAATGCCGTAAATGTGTGGATTTGGATGTGTTTATGGGGGATATGAGATGTGAATTTAAGGGAGGGTCGTGTTAG

mRNA sequence

ATGTTGACTACTGTATTGGGAATCACAATCGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGCCGGGATACAACAACGTATTGGACCTGAATATGCTGGTCCTTTGGGAGTTCTTCAAGCTTTAGCAGATGGCACAAAACTACTTTTTAAAGAAAATCTGCTTCCATCTAGAGGTGATACGCGTTTATTCAGTATCGGACCATCCATAGCAGTCATATCAATTTTACTAAGCTATTCAGTAATTCCTTTTGGTTATCGCCTTGTTTTAGCAGATCTGCAGATCGAGGCCCGAGAGCGATATGACAACCTAAAATCCAAAGATTTGTCTCCCTTACCCGCCCAATGCCGTAAATGTGTGGATTTGGATGTGTTTATGGGGGATATGAGATGTGAATTTAAGGGAGGGTCGTGTTAG

Coding sequence (CDS)

ATGTTGACTACTGTATTGGGAATCACAATCGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGCCGGGATACAACAACGTATTGGACCTGAATATGCTGGTCCTTTGGGAGTTCTTCAAGCTTTAGCAGATGGCACAAAACTACTTTTTAAAGAAAATCTGCTTCCATCTAGAGGTGATACGCGTTTATTCAGTATCGGACCATCCATAGCAGTCATATCAATTTTACTAAGCTATTCAGTAATTCCTTTTGGTTATCGCCTTGTTTTAGCAGATCTGCAGATCGAGGCCCGAGAGCGATATGACAACCTAAAATCCAAAGATTTGTCTCCCTTACCCGCCCAATGCCGTAAATGTGTGGATTTGGATGTGTTTATGGGGGATATGAGATGTGAATTTAAGGGAGGGTCGTGTTAG

Protein sequence

MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQIEARERYDNLKSKDLSPLPAQCRKCVDLDVFMGDMRCEFKGGSC

Homology

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BLAST of CmaCh05G007910 vs. Swiss-Prot
Match: NU1C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus GN=ndhA PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 8.8e-45
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR
Sbjct: 33  ILTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADL I
Sbjct: 93  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLPI 129

[Close]

BLAST of CmaCh05G007910 vs. Swiss-Prot
Match: NU1C_COFAR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica GN=ndhA PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.3e-43
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           + T VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENLLPSR
Sbjct: 33  IFTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GD RLFSIGPSIAVISILLSYSVIPFGYRLVLADL I
Sbjct: 93  GDARLFSIGPSIAVISILLSYSVIPFGYRLVLADLTI 129

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BLAST of CmaCh05G007910 vs. Swiss-Prot
Match: NU1C_HELAN (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus GN=ndhA PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.3e-43
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           + T VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENLLPSR
Sbjct: 33  IFTPVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAVISILLSY VIPFGYRLVLADL I
Sbjct: 93  GDTRLFSIGPSIAVISILLSYLVIPFGYRLVLADLSI 129

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BLAST of CmaCh05G007910 vs. Swiss-Prot
Match: NU1C_JASNU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Jasminum nudiflorum GN=ndhA PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-42
Identity = 88/97 (90.72%), Postives = 93/97 (95.88%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LT VLGIT+GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENL PSR
Sbjct: 34  ILTLVLGITLGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLFPSR 93

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLF+IGPSIAVISILLSYSVIPFGYRL+L DL I
Sbjct: 94  GDTRLFTIGPSIAVISILLSYSVIPFGYRLILGDLSI 130

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BLAST of CmaCh05G007910 vs. Swiss-Prot
Match: NU1C_DAUCA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota GN=ndhA PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-42
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LT VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENLLPSR
Sbjct: 33  ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAV SILLSY VIPFGYRLVLAD+ I
Sbjct: 93  GDTRLFSIGPSIAVTSILLSYLVIPFGYRLVLADVSI 129

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BLAST of CmaCh05G007910 vs. TrEMBL
Match: W8E3H6_9ROSI (NADH-quinone oxidoreductase subunit H OS=Cucumis hystrix GN=ndhA PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.8e-43
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR
Sbjct: 33  ILTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADL I
Sbjct: 93  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLPI 129

[Close]

BLAST of CmaCh05G007910 vs. TrEMBL
Match: G3ETV4_CUCME (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis melo subsp. melo GN=ndhA PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-42
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR
Sbjct: 33  ILTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFS+GPSIAVISILLSYSVIPFGYRLVLADL I
Sbjct: 93  GDTRLFSMGPSIAVISILLSYSVIPFGYRLVLADLPI 129

[Close]

BLAST of CmaCh05G007910 vs. TrEMBL
Match: F2W5X0_9ERIC (NAD(P)H-quinone oxidoreductase subunit 1 (Fragment) OS=Eurya muricata GN=ndhA PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.9e-42
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LT VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENLLPSR
Sbjct: 10  ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 69

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADL I
Sbjct: 70  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLSI 106

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BLAST of CmaCh05G007910 vs. TrEMBL
Match: A0A0C5CHI6_ACTDE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Actinidia deliciosa GN=ndhA PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.4e-42
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LT VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENLLPSR
Sbjct: 33  ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAVISILLSYSVIPFGYRL+LADL I
Sbjct: 93  GDTRLFSIGPSIAVISILLSYSVIPFGYRLILADLSI 129

[Close]

BLAST of CmaCh05G007910 vs. TrEMBL
Match: F2W5F3_9ERIC (NAD(P)H-quinone oxidoreductase subunit 1 (Fragment) OS=Actinidia kolomikta GN=ndhA PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.4e-42
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LT VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENLLPSR
Sbjct: 9   ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 68

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAVISILLSYSVIPFGYRL+LADL I
Sbjct: 69  GDTRLFSIGPSIAVISILLSYSVIPFGYRLILADLSI 105

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BLAST of CmaCh05G007910 vs. TAIR10
Match: ATCG01100.1 (ATCG01100.1 NADH dehydrogenase family protein)

HSP 1 Score: 156.8 bits (395), Expect = 1.0e-38
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           + + VLGI  GVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENL PSR
Sbjct: 33  IFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           G+T LFSIGPSIAVISILLSYSVIPF   LVLADL I
Sbjct: 93  GNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNI 129

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BLAST of CmaCh05G007910 vs. TAIR10
Match: ATMG01120.1 (ATMG01120.1 NADH dehydrogenase 1B)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-13
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +L  +L + +GV  +V  ER++ A +Q+R GP+  G  G+LQ LADG+KL+ KE + PS 
Sbjct: 9   ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSS 68

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
            +  LF + P    +  L++ +V+PF Y +VL+D  I
Sbjct: 69  ANFFLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNI 105

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BLAST of CmaCh05G007910 vs. TAIR10
Match: ATMG00516.1 (ATMG00516.1 NADH dehydrogenase 1C)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-13
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +L  +L + +GV  +V  ER++ A +Q+R GP+  G  G+LQ LADG+KL+ KE + PS 
Sbjct: 9   ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSS 68

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
            +  LF + P    +  L++ +V+PF Y +VL+D  I
Sbjct: 69  ANFFLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNI 105

[Close]

BLAST of CmaCh05G007910 vs. TAIR10
Match: ATMG01275.1 (ATMG01275.1 NADH dehydrogenase 1A)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-13
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +L  +L + +GV  +V  ER++ A +Q+R GP+  G  G+LQ LADG+KL+ KE + PS 
Sbjct: 9   ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSS 68

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
            +  LF + P    +  L++ +V+PF Y +VL+D  I
Sbjct: 69  ANFFLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNI 105

[Close]

BLAST of CmaCh05G007910 vs. TAIR10
Match: AT2G07785.1 (AT2G07785.1 NADH dehydrogenase family protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-10
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1


Query: 24 AGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSV 83
          A +Q+R GP+  G  G+LQ LADG+KL+ KE + PS  +  LF + P    +  L++ +V
Sbjct: 2  AFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFRMAPVATFMLSLVARAV 61

Query: 84 IPFGYRLVLADLQI 98
          +PF Y +VL+D  I
Sbjct: 62 VPFDYGMVLSDPNI 75

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BLAST of CmaCh05G007910 vs. NCBI nr
Match: gi|590000467|ref|YP_009004096.1| (NADH-plastoquinone oxidoreductase subunit 1 [Cucumis hystrix])

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-42
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR
Sbjct: 33  ILTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADL I
Sbjct: 93  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLPI 129

[Close]

BLAST of CmaCh05G007910 vs. NCBI nr
Match: gi|346578249|ref|YP_004841840.1| (NADH-plastoquinone oxidoreductase subunit 1 [Cucumis melo subsp. melo])

HSP 1 Score: 179.9 bits (455), Expect = 3.1e-42
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR
Sbjct: 33  ILTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFS+GPSIAVISILLSYSVIPFGYRLVLADL I
Sbjct: 93  GDTRLFSMGPSIAVISILLSYSVIPFGYRLVLADLPI 129

[Close]

BLAST of CmaCh05G007910 vs. NCBI nr
Match: gi|325610644|gb|ADZ36571.1| (NADH dehydrogenase subunit 1 [Eurya muricata])

HSP 1 Score: 178.7 bits (452), Expect = 7.0e-42
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LT VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENLLPSR
Sbjct: 10  ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 69

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADL I
Sbjct: 70  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLSI 106

[Close]

BLAST of CmaCh05G007910 vs. NCBI nr
Match: gi|772650128|ref|YP_009128126.1| (NADH-plastoquinone oxidoreductase subunit 1 (chloroplast) [Actinidia deliciosa])

HSP 1 Score: 178.3 bits (451), Expect = 9.1e-42
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LT VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENLLPSR
Sbjct: 33  ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 92

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAVISILLSYSVIPFGYRL+LADL I
Sbjct: 93  GDTRLFSIGPSIAVISILLSYSVIPFGYRLILADLSI 129

[Close]

BLAST of CmaCh05G007910 vs. NCBI nr
Match: gi|325610446|gb|ADZ36404.1| (NADH dehydrogenase subunit 1 [Actinidia kolomikta])

HSP 1 Score: 178.3 bits (451), Expect = 9.1e-42
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 1


Query: 1   MLTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSR 60
           +LT VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLG+LQALADGTKLLFKENLLPSR
Sbjct: 9   ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSR 68

Query: 61  GDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLQI 98
           GDTRLFSIGPSIAVISILLSYSVIPFGYRL+LADL I
Sbjct: 69  GDTRLFSIGPSIAVISILLSYSVIPFGYRLILADLSI 105

The following BLAST results are available for this feature:

BLAST of CmaCh05G007910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NU1C_CUCSA	8.8e-45	97.94	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus GN=nd...	[more]
NU1C_COFAR	6.3e-43	93.81	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica GN=ndh...	[more]
NU1C_HELAN	6.3e-43	93.81	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus GN=...	[more]
NU1C_JASNU	1.8e-42	90.72	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Jasminum nudiflorum G...	[more]
NU1C_DAUCA	1.8e-42	92.78	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota GN=ndhA...	[more]

BLAST of CmaCh05G007910 vs. TrEMBL


Match Name	E-value	Identity	Description
W8E3H6_9ROSI	9.8e-43	97.94	NADH-quinone oxidoreductase subunit H OS=Cucumis hystrix GN=ndhA PE=3 SV=1	[more]
G3ETV4_CUCME	2.2e-42	96.91	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis melo subsp. m...	[more]
F2W5X0_9ERIC	4.9e-42	95.88	NAD(P)H-quinone oxidoreductase subunit 1 (Fragment) OS=Eurya muricata GN=ndhA PE...	[more]
A0A0C5CHI6_ACTDE	6.4e-42	94.85	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Actinidia deliciosa G...	[more]
F2W5F3_9ERIC	6.4e-42	94.85	NAD(P)H-quinone oxidoreductase subunit 1 (Fragment) OS=Actinidia kolomikta GN=nd...	[more]

BLAST of CmaCh05G007910 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01100.1	1.0e-38	85.57	ATCG01100.1 NADH dehydrogenase family protein	[more]
ATMG01120.1	1.9e-13	39.18	ATMG01120.1 NADH dehydrogenase 1B	[more]
ATMG00516.1	1.9e-13	39.18	ATMG00516.1 NADH dehydrogenase 1C	[more]
ATMG01275.1	1.9e-13	39.18	ATMG01275.1 NADH dehydrogenase 1A	[more]
AT2G07785.1	2.6e-10	41.89	NADH dehydrogenase family protein	[more]

BLAST of CmaCh05G007910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590000467\|ref\|YP_009004096.1\|	1.4e-42	97.94	NADH-plastoquinone oxidoreductase subunit 1 [Cucumis hystrix]	[more]
gi\|346578249\|ref\|YP_004841840.1\|	3.1e-42	96.91	NADH-plastoquinone oxidoreductase subunit 1 [Cucumis melo subsp. melo]	[more]
gi\|325610644\|gb\|ADZ36571.1\|	7.0e-42	95.88	NADH dehydrogenase subunit 1 [Eurya muricata]	[more]
gi\|772650128\|ref\|YP_009128126.1\|	9.1e-42	94.85	NADH-plastoquinone oxidoreductase subunit 1 (chloroplast) [Actinidia deliciosa]	[more]
gi\|325610446\|gb\|ADZ36404.1\|	9.1e-42	94.85	NADH dehydrogenase subunit 1 [Actinidia kolomikta]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001694	NADH_UbQ_OxRdtase_su1/FPO
IPR018086	NADH_UbQ_OxRdtase_su1_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G007910.1	CmaCh05G007910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 1..97 score: 1.4
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 4..97 score: 5.3
IPR018086	NADH:ubiquinone oxidoreductase, subunit 1, conserved site	PROSITE	PS00667	COMPLEX1_ND1_1	coord: 39..54 scor
None	No IPR available	PANTHER	PTHR11432:SF7	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 1, CHLOROPLASTIC	coord: 1..97 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G007910	Watermelon (97103) v2	cmawmbB808
CmaCh05G007910	Cucurbita maxima (Rimu)	cmacmaB191
CmaCh05G007910	Cucumber (Gy14) v1	cgycmaB0774
CmaCh05G007910	Cucurbita moschata (Rifu)	cmacmoB764
CmaCh05G007910	Cucurbita moschata (Rifu)	cmacmoB786
CmaCh05G007910	Wild cucumber (PI 183967)	cmacpiB795
CmaCh05G007910	Cucumber (Chinese Long) v2	cmacuB786
CmaCh05G007910	Melon (DHL92) v3.5.1	cmameB737
CmaCh05G007910	Melon (DHL92) v3.5.1	cmameB739
CmaCh05G007910	Watermelon (Charleston Gray)	cmawcgB690
CmaCh05G007910	Watermelon (97103) v1	cmawmB767
CmaCh05G007910	Cucurbita pepo (Zucchini)	cmacpeB766
CmaCh05G007910	Cucurbita pepo (Zucchini)	cmacpeB790
CmaCh05G007910	Bottle gourd (USVL1VR-Ls)	cmalsiB709
CmaCh05G007910	Cucumber (Gy14) v2	cgybcmaB252
CmaCh05G007910	Melon (DHL92) v3.6.1	cmamedB831
CmaCh05G007910	Melon (DHL92) v3.6.1	cmamedB833
CmaCh05G007910	Silver-seed gourd	carcmaB0671
CmaCh05G007910	Cucumber (Chinese Long) v3	cmacucB0928