CmaCh05G002970 (gene) Cucurbita maxima (Rimu)

NameCmaCh05G002970
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNAD(P)H-quinone oxidoreductase subunit K, chloroplastic
LocationCma_Chr05 : 1288013 .. 1288758 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGAGCTTGAGAAGCTTCGGGTCCAGTCGGCCCGTAAAACTCACTCGGATAAGCAGTATTATTGAACCAGACAAAACAACAAGCAATAAAACCAAAAACGGAGTGAGATTTTAATAACCTATAATGTGTACGGACAGAAGAGTCGAGTTGATTAATTTAAGAAGCTGCACTGACCATACTTTCAGTTTCAGATGTGTTGAAAACAATTCCCAGAACGTTGTCCACCTAAACCCGAGGCTGTTATAGATGCAATAACAAAACTTCGTAAGAAAATATCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGATAATCGGTTTTTTACTACCAACCACAAATTTCATGTTGGCCCAAGTACTCATACTGGAAAAAGAGGAGAATCGGTTTTTTACTACCAACCACAAATTTCATGTTGGCCCAAGTACTCATACTGGAAATTACGATCAAGGATTACTCTATCAACCATCATCTACTTCAGAGATCATCCCTCCTGAAACACTGCACAAAATTTAATCCGGTGAATAAGTTAGCCATGTAAAAAATTGGATTTTATAGACAATTCTAACATGTGGTCAAGCTTTGAGCCACGTTTCAAGATAAATTGTTTTAGAAAATATGGACGAGTCACATTGCTGGCATGCTACAGGCAACACGTTTTAGACAAACATCTCCTAAAAAATAATATTTTATTAAATTTTTCATTTTAAAAGGTCAAAAAAATAAATCTTATACGTAA

mRNA sequence

ATGCTTGAGCTTGAGAAGCTTCGGGTCCAGTCGGCCCAACGTTGTCCACCTAAACCCGAGGCTGTTATAGATGCAATAACAAAACTTCGTAAGAAAATATCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGATAATCGGTTTTTTACTACCAACCACAAATTTCATGTTGGCCCAAGTCAAAAAAATAAATCTTATACGTAA

Coding sequence (CDS)

ATGCTTGAGCTTGAGAAGCTTCGGGTCCAGTCGGCCCAACGTTGTCCACCTAAACCCGAGGCTGTTATAGATGCAATAACAAAACTTCGTAAGAAAATATCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGATAATCGGTTTTTTACTACCAACCACAAATTTCATGTTGGCCCAAGTCAAAAAAATAAATCTTATACGTAA

Protein sequence

MLELEKLRVQSAQRCPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSYT
BLAST of CmaCh05G002970 vs. Swiss-Prot
Match: NDHK_CUCSA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cucumis sativus GN=ndhK PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-19
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHKFHVGPSTHTGNY 192

BLAST of CmaCh05G002970 vs. Swiss-Prot
Match: NDHK_OENAR (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera argillicola GN=ndhK PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEA+IDAITKLRKKISREIYEDRI+SQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAIIDAITKLRKKISREIYEDRIRSQEENRCFTTNHKFHVGPSMHTGNY 192

BLAST of CmaCh05G002970 vs. Swiss-Prot
Match: NDHK_OENPA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera parviflora GN=ndhK PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEA+IDAITKLRKKISREIYEDRI+SQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAIIDAITKLRKKISREIYEDRIRSQEENRCFTTNHKFHVGPSMHTGNY 192

BLAST of CmaCh05G002970 vs. Swiss-Prot
Match: NDHK_OENGL (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera glazioviana GN=ndhK PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEA+IDAITKLRKKISREIYEDRI+SQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAIIDAITKLRKKISREIYEDRIRSQEENRCFTTNHKFHVGPSMHTGNY 192

BLAST of CmaCh05G002970 vs. Swiss-Prot
Match: NDHK_OENBI (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera biennis GN=ndhK PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEA+IDAITKLRKKISREIYEDRI+SQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAIIDAITKLRKKISREIYEDRIRSQEENRCFTTNHKFHVGPSMHTGNY 192

BLAST of CmaCh05G002970 vs. TrEMBL
Match: A0A0S2IEN2_9ROSI (NADH-quinone oxidoreductase subunit B OS=Cucurbita ecuadorensis GN=ndhK PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-18
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NRFFTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRFFTTNHKFHVGPSTHTGNY 192

BLAST of CmaCh05G002970 vs. TrEMBL
Match: A0A0S2IFI4_9ROSI (NADH-quinone oxidoreductase subunit B OS=Cucurbita andreana GN=ndhK PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-18
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NRFFTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRFFTTNHKFHVGPSTHTGNY 192

BLAST of CmaCh05G002970 vs. TrEMBL
Match: G3ETY9_CUCME (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cucumis melo subsp. melo GN=ndhK PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.2e-18
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHKFHVGPSTNTGNY 192

BLAST of CmaCh05G002970 vs. TrEMBL
Match: A0A0S2IFG7_9ROSI (NADH-quinone oxidoreductase subunit B OS=Cucurbita digitata GN=ndhK PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHKFHVGPSTHTGNY 192

BLAST of CmaCh05G002970 vs. TrEMBL
Match: A0A0S2IF12_9ROSI (NADH-quinone oxidoreductase subunit B OS=Cucurbita cordata GN=ndhK PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHKFHVGPSTHTGNY 192

BLAST of CmaCh05G002970 vs. TAIR10
Match: ATCG00430.1 (ATCG00430.1 photosystem II reaction center protein G)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-15
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHV 60
           CPPKPEAVIDAITKLRKKI+REIY+DRI+ Q+ NR FTTNHKF V
Sbjct: 139 CPPKPEAVIDAITKLRKKIAREIYKDRIRPQQGNRCFTTNHKFFV 183

BLAST of CmaCh05G002970 vs. NCBI nr
Match: gi|952954679|gb|ALO22038.1| (NdhK (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-18
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NRFFTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRFFTTNHKFHVGPSTHTGNY 192

BLAST of CmaCh05G002970 vs. NCBI nr
Match: gi|346578195|ref|YP_004841787.1| (NADH-plastoquinone oxidoreductase subunit K [Cucumis melo subsp. melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHKFHVGPSTNTGNY 192

BLAST of CmaCh05G002970 vs. NCBI nr
Match: gi|1002166188|ref|YP_009236284.1| (NADH-plastoquinone oxidoreductase subunit K (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHKFHVGPSTHTGNY 192

BLAST of CmaCh05G002970 vs. NCBI nr
Match: gi|68164807|ref|YP_247603.1| (NADH dehydrogenase subunit K [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHKFHVGPSTHTGNY 192

BLAST of CmaCh05G002970 vs. NCBI nr
Match: gi|952954396|gb|ALO21760.1| (NdhK (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHKFHVGPSTHTGNY 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NDHK_CUCSA1.1e-1987.04NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cucumis sativus GN=nd... [more]
NDHK_OENAR2.4e-1983.33NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera argillicola... [more]
NDHK_OENPA2.4e-1983.33NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera parviflora ... [more]
NDHK_OENGL2.4e-1983.33NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera glazioviana... [more]
NDHK_OENBI2.4e-1983.33NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera biennis GN=... [more]
Match NameE-valueIdentityDescription
A0A0S2IEN2_9ROSI1.4e-1888.89NADH-quinone oxidoreductase subunit B OS=Cucurbita ecuadorensis GN=ndhK PE=3 SV=... [more]
A0A0S2IFI4_9ROSI1.4e-1888.89NADH-quinone oxidoreductase subunit B OS=Cucurbita andreana GN=ndhK PE=3 SV=1[more]
G3ETY9_CUCME9.2e-1887.04NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cucumis melo subsp. m... [more]
A0A0S2IFG7_9ROSI1.2e-1787.04NADH-quinone oxidoreductase subunit B OS=Cucurbita digitata GN=ndhK PE=3 SV=1[more]
A0A0S2IF12_9ROSI1.2e-1787.04NADH-quinone oxidoreductase subunit B OS=Cucurbita cordata GN=ndhK PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00430.12.9e-1582.22ATCG00430.1 photosystem II reaction center protein G[more]
Match NameE-valueIdentityDescription
gi|952954679|gb|ALO22038.1|2.0e-1888.89NdhK (plastid) [Cucurbita ecuadorensis][more]
gi|346578195|ref|YP_004841787.1|1.3e-1787.04NADH-plastoquinone oxidoreductase subunit K [Cucumis melo subsp. melo][more]
gi|1002166188|ref|YP_009236284.1|1.7e-1787.04NADH-plastoquinone oxidoreductase subunit K (chloroplast) [Gynostemma pentaphyll... [more]
gi|68164807|ref|YP_247603.1|1.7e-1787.04NADH dehydrogenase subunit K [Cucumis sativus][more]
gi|952954396|gb|ALO21760.1|1.7e-1787.04NdhK (plastid) [Cucurbita argyrosperma][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G002970.1CmaCh05G002970.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11995NADH DEHYDROGENASEcoord: 15..68
score: 4.7
NoneNo IPR availablePANTHERPTHR11995:SF21NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT K, CHLOROPLASTICcoord: 15..68
score: 4.7
NoneNo IPR availableunknownSSF56770HydA/Nqo6-likecoord: 15..43
score: 1.2

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh05G002970Cucumber (Chinese Long) v3cmacucB0926
CmaCh05G002970Cucumber (Chinese Long) v3cmacucB0938
CmaCh05G002970Cucumber (Chinese Long) v3cmacucB0952
CmaCh05G002970Cucumber (Chinese Long) v3cmacucB0958
CmaCh05G002970Watermelon (97103) v2cmawmbB799
CmaCh05G002970Watermelon (97103) v2cmawmbB813
CmaCh05G002970Watermelon (97103) v2cmawmbB819
CmaCh05G002970Watermelon (97103) v2cmawmbB832
CmaCh05G002970Wax gourdcmawgoB0956
CmaCh05G002970Wax gourdcmawgoB0968
CmaCh05G002970Cucurbita maxima (Rimu)cmacmaB067
CmaCh05G002970Cucurbita maxima (Rimu)cmacmaB199
CmaCh05G002970Cucurbita maxima (Rimu)cmacmaB427
CmaCh05G002970Cucurbita maxima (Rimu)cmacmaB519
CmaCh05G002970Cucumber (Gy14) v1cgycmaB0461
CmaCh05G002970Cucumber (Gy14) v1cgycmaB0940
CmaCh05G002970Cucurbita moschata (Rifu)cmacmoB755
CmaCh05G002970Cucurbita moschata (Rifu)cmacmoB770
CmaCh05G002970Cucurbita moschata (Rifu)cmacmoB780
CmaCh05G002970Cucurbita moschata (Rifu)cmacmoB786
CmaCh05G002970Wild cucumber (PI 183967)cmacpiB793
CmaCh05G002970Wild cucumber (PI 183967)cmacpiB804
CmaCh05G002970Cucumber (Chinese Long) v2cmacuB795
CmaCh05G002970Cucumber (Chinese Long) v2cmacuB784
CmaCh05G002970Melon (DHL92) v3.5.1cmameB727
CmaCh05G002970Melon (DHL92) v3.5.1cmameB731
CmaCh05G002970Watermelon (Charleston Gray)cmawcgB697
CmaCh05G002970Watermelon (Charleston Gray)cmawcgB703
CmaCh05G002970Watermelon (Charleston Gray)cmawcgB712
CmaCh05G002970Watermelon (97103) v1cmawmB753
CmaCh05G002970Watermelon (97103) v1cmawmB759
CmaCh05G002970Watermelon (97103) v1cmawmB761
CmaCh05G002970Cucurbita pepo (Zucchini)cmacpeB766
CmaCh05G002970Cucurbita pepo (Zucchini)cmacpeB772
CmaCh05G002970Cucurbita pepo (Zucchini)cmacpeB773
CmaCh05G002970Cucurbita pepo (Zucchini)cmacpeB780
CmaCh05G002970Cucurbita pepo (Zucchini)cmacpeB787
CmaCh05G002970Cucurbita pepo (Zucchini)cmacpeB797
CmaCh05G002970Bottle gourd (USVL1VR-Ls)cmalsiB720
CmaCh05G002970Bottle gourd (USVL1VR-Ls)cmalsiB711
CmaCh05G002970Bottle gourd (USVL1VR-Ls)cmalsiB725
CmaCh05G002970Bottle gourd (USVL1VR-Ls)cmalsiB739
CmaCh05G002970Cucumber (Gy14) v2cgybcmaB250
CmaCh05G002970Cucumber (Gy14) v2cgybcmaB420
CmaCh05G002970Cucumber (Gy14) v2cgybcmaB846
CmaCh05G002970Cucumber (Gy14) v2cgybcmaB968
CmaCh05G002970Melon (DHL92) v3.6.1cmamedB821
CmaCh05G002970Melon (DHL92) v3.6.1cmamedB825
CmaCh05G002970Melon (DHL92) v3.6.1cmamedB839
CmaCh05G002970Silver-seed gourdcarcmaB0137
CmaCh05G002970Silver-seed gourdcarcmaB0189
CmaCh05G002970Silver-seed gourdcarcmaB0443
CmaCh05G002970Silver-seed gourdcarcmaB1294
CmaCh05G002970Silver-seed gourdcarcmaB1357