CmaCh04G027700 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G027700
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 18618076 .. 18619908 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACTGAGTTGACAGATGGAACTTTGGGAGGACGGACTACTGAGTCGACCGATGGTACTTTAGGTGGAGGAACTACGAAGTCGACAGATGGTACGCCAAATGATACTTTGGGTGGAGGAACTACGGAGTCGACAGATGGTATGCCAGATGATACTTTGGGTGGAGGAACTACGGAGTCGACAGATGGAACTTTGGGTGGAGGAATTACGGAGTCGACAGATGGTACTTTGGGTGGAGGAACAACAGAGTTGTCAGATAGTACTTTTGGTGAAGGAACAATAGAGTTGCTAGATGGTACTTTGGGTGGAGGAACAACAGAGTTGTAGGATGATACCTTGGGTGTAGGATCAACAGAGTTGACAGATGGAACTTTGGGTGGAGGAACAACAGCGTTGACAGATATTAACGACCCTCTTTTATTATTAAGACTCTGTTTGATAACAACTTTGTATTTCAAAAGTTCACCGTACAAACCAATAGATTGTGATATCTAAGTAGACCCATGACATCATGATTAAATGACTATTAAGTTATTTCCATATATGATCAAATATTAATAAATTATTTCCATGTTTGACCAAATACTGCCAAATTGAGTTTTATGATGGTTAGAATGGAAGTCATAAAATTGATTTTTTGACTAAATATTATCGATTTGTTACGCATTGATGTATCGCTTCAAATTAGACAAAAATTGTAAATTTTTCGAGAAAAGATTTGTTTAATTTTCTATCAAATATTCATTGTAGCCATGTTTGGAAAGTTGGCGATGAAACATTAGGCAAGTGCAGATAGTTGAGATTGATCTTTAACTATGTATTTTAGAGAAACAACGTGAGTTTTTTCATTTTATATTTTTCACTTGTTTACAATTGTGACAACCCATTTTCTCGAGTCACGAGCCATGACTTCTACTATTGGCGGAAAATTTAAAATAACTTTGATCAAGCTAAACTTAGGGTTCTAGGATAACACGATTAGCTCTATACTAGTTCTTCTGTTCGTAACCAACTTATATATCATATGCACCGATGCGTCACTTCATCATGAACACTATCAATCTAGACAAATTCCATATAAAAAATTACTTGGCGGCTTTCTAATAGGCTCTATAATATCATCATCATCAGGGAGGGAGCGACCCTCATGTTTGTTAACTATCATATACTCATATGGTCTCTTATCCTCGTCCATACAAGTTCACGACTAAGGAATAGTTGAAAATCTCCTAATTGTCTCCATACATAGTATTTTCATGATACTATAAAGTTAAACATACATGGTAGACACACAACTACTTACCGAGTATATTTTTATACGCATTTGAAAAGAAAAATTCGGTTGTATTTTTCTTTTATTTATTTATCCCAAAGTAAAAAAGAAAATTCTCGGGATATTATTATTCGGAGTGAAAAATCTGAATTCCGTTGTATAATGGGGGACATAGAGAGTAATTTTGAAGAGAGTAAAATCAGTCCCCAGGGTCAAAACCCTAGATAGACTCCGGCACAGGAAGTCTCGACAATCAACGATCGTTTCCCAAAAATTATCGATTTCGAACAGTCGGTGTTCGCCTCACATTGCTACCCTTCTTCTTCATTGTTCCTCAATCTACAGGTTGCTTTTGATTTTGCTTCTAACGTTTCTAATTTCTAAGTCTATCCTCCTCCGTTTTATTTTCTGTTTTCGTTATCAATTGTTTCATCTGTTGTTGCTCAGTTTTGCGATACTTCTGCGATGCGGTTGTATTCATTGTCCTGCTATATCTATCTGCGTCTGATTGTGCTGTCGAGTTGAGATCTAAACTCGTTTTCTGTTCTTATTTCTAA

mRNA sequence

ATGCCAACTGAGTTGACAGATGGAACTTTGGGAGGACGGACTACTGAGTCGACCGATGGTACTTTAGGTGGAGGAACTACGAAGTCGACAGATGGTACGCCAAATGATACTTTGGGTGGAGGAACTACGGAGTCGACAGATGGTATGCCAGATGATACTTTGGGTGGAGGAACTACGGAGTCGACAGATGGAACTTTGGGTGGAGGAATTACGGAGTCGACAGATGGTACTTTGGGTGGAGGAACAACAGAGTTGTCAGATAGTACTTTTGGTGAAGGAACAATAGAGTTGCTAGATGGAAGTCTCGACAATCAACGATCGTTTCCCAAAAATTATCGATTTCGAACAGTCGGTGTTCGCCTCACATTGCTACCCTTCTTCTTCATTGTTCCTCAATCTACAGTTTTGCGATACTTCTGCGATGCGGTTGTATTCATTGTCCTGCTATATCTATCTGCGTCTGATTGTGCTGTCGAGTTGAGATCTAAACTCGTTTTCTGTTCTTATTTCTAA

Coding sequence (CDS)

ATGCCAACTGAGTTGACAGATGGAACTTTGGGAGGACGGACTACTGAGTCGACCGATGGTACTTTAGGTGGAGGAACTACGAAGTCGACAGATGGTACGCCAAATGATACTTTGGGTGGAGGAACTACGGAGTCGACAGATGGTATGCCAGATGATACTTTGGGTGGAGGAACTACGGAGTCGACAGATGGAACTTTGGGTGGAGGAATTACGGAGTCGACAGATGGTACTTTGGGTGGAGGAACAACAGAGTTGTCAGATAGTACTTTTGGTGAAGGAACAATAGAGTTGCTAGATGGAAGTCTCGACAATCAACGATCGTTTCCCAAAAATTATCGATTTCGAACAGTCGGTGTTCGCCTCACATTGCTACCCTTCTTCTTCATTGTTCCTCAATCTACAGTTTTGCGATACTTCTGCGATGCGGTTGTATTCATTGTCCTGCTATATCTATCTGCGTCTGATTGTGCTGTCGAGTTGAGATCTAAACTCGTTTTCTGTTCTTATTTCTAA

Protein sequence

MPTELTDGTLGGRTTESTDGTLGGGTTKSTDGTPNDTLGGGTTESTDGMPDDTLGGGTTESTDGTLGGGITESTDGTLGGGTTELSDSTFGEGTIELLDGSLDNQRSFPKNYRFRTVGVRLTLLPFFFIVPQSTVLRYFCDAVVFIVLLYLSASDCAVELRSKLVFCSYF
Homology
[Close]
BLAST of CmaCh04G027700 vs. NCBI nr
Match: gi|974646694|ref|WP_059232547.1| (hypothetical protein, partial [Lactococcus lactis])

HSP 1 Score: 69.3 bits (168), Expect = 7.3e-09
Identity = 57/107 (53.27%), Postives = 59/107 (55.14%), Query Frame = 1 

Query: 3   TELTDGTLGGRTTESTDGTLGGGTTKSTDGT-------PNDTLGGG-TTESTDGMPDDTL 62
           T  TDGT GG TT  TDGT GG TT  TDGT       P D  GGG TT  TDG    T 
Sbjct: 21  TNPTDGTGGGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDG----TG 80

Query: 63  GGGTTESTDGTLGGGITESTDGTLGGGTTELSDSTFGEGTIELLDGS 102
           GG TT  TDGT GG  T  TDGT GG TT  +D T G  T    DG+
Sbjct: 81  GGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDGT 123

[Close]
BLAST of CmaCh04G027700 vs. NCBI nr
Match: gi|696369922|ref|WP_032944929.1| (hypothetical protein, partial [Lactococcus lactis])

HSP 1 Score: 69.3 bits (168), Expect = 7.3e-09
Identity = 57/107 (53.27%), Postives = 59/107 (55.14%), Query Frame = 1 

Query: 3   TELTDGTLGGRTTESTDGTLGGGTTKSTDGT-------PNDTLGGG-TTESTDGMPDDTL 62
           T  TDGT GG TT  TDGT GG TT  TDGT       P D  GGG TT  TDG    T 
Sbjct: 20  TNPTDGTGGGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDG----TG 79

Query: 63  GGGTTESTDGTLGGGITESTDGTLGGGTTELSDSTFGEGTIELLDGS 102
           GG TT  TDGT GG  T  TDGT GG TT  +D T G  T    DG+
Sbjct: 80  GGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDGT 122

[Close]
BLAST of CmaCh04G027700 vs. NCBI nr
Match: gi|516476236|ref|WP_017864680.1| (hypothetical protein [Lactococcus lactis])

HSP 1 Score: 69.3 bits (168), Expect = 7.3e-09
Identity = 57/107 (53.27%), Postives = 59/107 (55.14%), Query Frame = 1 

Query: 3   TELTDGTLGGRTTESTDGTLGGGTTKSTDGT-------PNDTLGGG-TTESTDGMPDDTL 62
           T  TDGT GG TT  TDGT GG TT  TDGT       P D  GGG TT  TDG    T 
Sbjct: 549 TNPTDGTGGGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDG----TG 608

Query: 63  GGGTTESTDGTLGGGITESTDGTLGGGTTELSDSTFGEGTIELLDGS 102
           GG TT  TDGT GG  T  TDGT GG TT  +D T G  T    DG+
Sbjct: 609 GGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDGTGGGNTTNPTDGT 651

[Close]
BLAST of CmaCh04G027700 vs. NCBI nr
Match: gi|944492961|ref|WP_055715473.1| (hypothetical protein, partial [Streptomyces torulosus])

HSP 1 Score: 62.8 bits (151), Expect = 6.8e-07
Identity = 51/108 (47.22%), Postives = 56/108 (51.85%), Query Frame = 1 

Query: 5   LTDGTLGGRTTESTDGTLGGGTTKSTDGTPNDTLGGGTTESTDGMPDDTLGGGTTESTDG 64
           +T+    G T  +TDG   GGTT    G   DT GGGTT  TDG  D   GGGTT  TDG
Sbjct: 219 VTEEEANGTTGTTTDGQNNGGTT----GDTGDTTGGGTTGDTDGATDGATGGGTTGDTDG 278

Query: 65  TLGGGITESTDGTLG---------GGTTELSDSTFGEGTIELLDGSLD 104
           T GGG T  TDGT G         GGTT  +  T G GT    DG+ D
Sbjct: 279 TTGGGTTGDTDGTTGGNSTGDTTSGGTTGDTGDTTGGGTTGDTDGATD 322

The following BLAST results are available for this feature:
BLAST of CmaCh04G027700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G027700 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh04G027700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G027700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|974646694|ref|WP_059232547.1|7.3e-0953.27hypothetical protein, partial [Lactococcus lactis][more]
gi|696369922|ref|WP_032944929.1|7.3e-0953.27hypothetical protein, partial [Lactococcus lactis][more]
gi|516476236|ref|WP_017864680.1|7.3e-0953.27hypothetical protein [Lactococcus lactis][more]
gi|944492961|ref|WP_055715473.1|6.8e-0747.22hypothetical protein, partial [Streptomyces torulosus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G027700.1CmaCh04G027700.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G027700Cucurbita moschata (Rifu)cmacmoB692
CmaCh04G027700Cucurbita moschata (Rifu)cmacmoB716
CmaCh04G027700Cucurbita moschata (Rifu)cmacmoB729
CmaCh04G027700Wild cucumber (PI 183967)cmacpiB694
CmaCh04G027700Wild cucumber (PI 183967)cmacpiB711
CmaCh04G027700Wild cucumber (PI 183967)cmacpiB730
CmaCh04G027700Cucumber (Chinese Long) v2cmacuB704
CmaCh04G027700Cucumber (Chinese Long) v2cmacuB723
CmaCh04G027700Melon (DHL92) v3.5.1cmameB634
CmaCh04G027700Melon (DHL92) v3.5.1cmameB671
CmaCh04G027700Melon (DHL92) v3.5.1cmameB685
CmaCh04G027700Watermelon (Charleston Gray)cmawcgB608
CmaCh04G027700Watermelon (Charleston Gray)cmawcgB613
CmaCh04G027700Watermelon (Charleston Gray)cmawcgB654
CmaCh04G027700Watermelon (97103) v1cmawmB652
CmaCh04G027700Watermelon (97103) v1cmawmB658
CmaCh04G027700Watermelon (97103) v1cmawmB722
CmaCh04G027700Cucurbita pepo (Zucchini)cmacpeB705
CmaCh04G027700Cucurbita pepo (Zucchini)cmacpeB721
CmaCh04G027700Bottle gourd (USVL1VR-Ls)cmalsiB648
CmaCh04G027700Bottle gourd (USVL1VR-Ls)cmalsiB651
CmaCh04G027700Bottle gourd (USVL1VR-Ls)cmalsiB658
CmaCh04G027700Cucumber (Gy14) v2cgybcmaB647
CmaCh04G027700Melon (DHL92) v3.6.1cmamedB720
CmaCh04G027700Melon (DHL92) v3.6.1cmamedB753
CmaCh04G027700Melon (DHL92) v3.6.1cmamedB769
CmaCh04G027700Silver-seed gourdcarcmaB0374
CmaCh04G027700Silver-seed gourdcarcmaB0967
CmaCh04G027700Cucumber (Chinese Long) v3cmacucB0816
CmaCh04G027700Cucumber (Chinese Long) v3cmacucB0860
CmaCh04G027700Watermelon (97103) v2cmawmbB714
CmaCh04G027700Watermelon (97103) v2cmawmbB757
CmaCh04G027700Watermelon (97103) v2cmawmbB797
CmaCh04G027700Wax gourdcmawgoB0839
CmaCh04G027700Cucurbita maxima (Rimu)cmacmaB276
CmaCh04G027700Cucurbita maxima (Rimu)cmacmaB324
CmaCh04G027700Cucurbita maxima (Rimu)cmacmaB424
CmaCh04G027700Cucumber (Gy14) v1cgycmaB0275
CmaCh04G027700Cucumber (Gy14) v1cgycmaB0441
CmaCh04G027700Cucumber (Gy14) v1cgycmaB0939