CmaCh04G027470 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G027470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Defensin-like protein
Location	Cma_Chr04 : 18465257 .. 18465893 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATAAATATACTCATTTCAATCACAATCAACAAACTATCTTTGAATCAAACAAATAAATTTTGTAAAGCGTTGATTTTCCAGAAGATGGCGAAGTTCTGTTGCCCTCTCCTTTTCCTTCTCCTTGTTCTGTCAGGTTTGTTTAGTAGCATTGTTTTTGTTTGGTTTAGGATAATATTTAGTTGGAATGATGAAATGGTACTACTTTTGGCAGCTGCATTGATGATGCCTGAAGCAGCGCAGGCAAGTCCTTGCCATGAGAGGCTATATGAAACTGGATGCGAAGCTTCTGCATGTCGCAAACAGTGTGAAGAGAAGTACTCCACTTCAACATTTGAATGCGTTCCAAATCCTCTGCATCCCCCTCACATTGCTTGCTTGTGCTTCTTCGATTGCCCTAAAAATTGACCAAACTTTTTGTCTAATCAATGTCTCCAAATAAATATTGGGAGGAACTAATCAAGTTTTTGCCGAATCAAATTATGCATTTTAAATTATTATTATTATATGTTATTTTGTAGACTTATGAGACCAATTTATTCTTAAATTTGAAATATATATATACTTTTTTTCTGTAGTAGTCAAGAGTTGTTCCTATTTGTAAATTTCTTGGGGATTTCAACGCTCACAACGTGGA

mRNA sequence

CATATAAATATACTCATTTCAATCACAATCAACAAACTATCTTTGAATCAAACAAATAAATTTTGTAAAGCGTTGATTTTCCAGAAGATGGCGAAGTTCTGTTGCCCTCTCCTTTTCCTTCTCCTTGTTCTGTCAGCTGCATTGATGATGCCTGAAGCAGCGCAGGCAAGTCCTTGCCATGAGAGGCTATATGAAACTGGATGCGAAGCTTCTGCATGTCGCAAACAGTGTGAAGAGAAGTACTCCACTTCAACATTTGAATGCGTTCCAAATCCTCTGCATCCCCCTCACATTGCTTGCTTGTGCTTCTTCGATTGCCCTAAAAATTGACCAAACTTTTTGTCTAATCAATGTCTCCAAATAAATATTGGGAGGAACTAATCAAGTTTTTGCCGAATCAAATTATGCATTTTAAATTATTATTATTATATGTTATTTTGTAGACTTATGAGACCAATTTATTCTTAAATTTGAAATATATATATACTTTTTTTCTGTAGTAGTCAAGAGTTGTTCCTATTTGTAAATTTCTTGGGGATTTCAACGCTCACAACGTGGA

Coding sequence (CDS)

ATGGCGAAGTTCTGTTGCCCTCTCCTTTTCCTTCTCCTTGTTCTGTCAGCTGCATTGATGATGCCTGAAGCAGCGCAGGCAAGTCCTTGCCATGAGAGGCTATATGAAACTGGATGCGAAGCTTCTGCATGTCGCAAACAGTGTGAAGAGAAGTACTCCACTTCAACATTTGAATGCGTTCCAAATCCTCTGCATCCCCCTCACATTGCTTGCTTGTGCTTCTTCGATTGCCCTAAAAATTGA

Protein sequence

MAKFCCPLLFLLLVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFECVPNPLHPPHIACLCFFDCPKN

Homology

[Close]

BLAST of CmaCh04G027470 vs. TrEMBL
Match: A0A0A0KU45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634350 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-09
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1


Query: 1  MAKFCCPLLFL-LLVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60
          MAKF C L F+   +LSAA +MP    A+ C  +LY+ GC    C ++C +KY  S+ EC
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYD-GCLPKDCTQKCSDKYPNSSSEC 60

Query: 61 VPNPLHPPHIACLCFFDC 78
          V  P  P H +C CF+DC
Sbjct: 61 VAVPPIPFHYSCYCFYDC 77

[Close]

BLAST of CmaCh04G027470 vs. TrEMBL
Match: A0A0A0KS76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634340 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1


Query: 11 LLLVLSAALM-MPEAAQASPCHERLYETGCEASACRKQCEEKY-STSTFECVPNPLHPPH 70
          + L+LS A M MP+ A A  C ++LY+ GC A  C+++C  KY + S+ +C+  P  P H
Sbjct: 12 VFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSSQCLSLPPIPFH 71

Query: 71 IACLCFFDC 78
           ACLCF++C
Sbjct: 72 NACLCFYNC 80

[Close]

BLAST of CmaCh04G027470 vs. NCBI nr
Match: gi|700197262|gb|KGN52439.1| (hypothetical protein Csa_5G634350 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 7.6e-09
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1


Query: 1  MAKFCCPLLFL-LLVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60
          MAKF C L F+   +LSAA +MP    A+ C  +LY+ GC    C ++C +KY  S+ EC
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYD-GCLPKDCTQKCSDKYPNSSSEC 60

Query: 61 VPNPLHPPHIACLCFFDC 78
          V  P  P H +C CF+DC
Sbjct: 61 VAVPPIPFHYSCYCFYDC 77

[Close]

BLAST of CmaCh04G027470 vs. NCBI nr
Match: gi|700197261|gb|KGN52438.1| (hypothetical protein Csa_5G634340 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-06
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1


Query: 11 LLLVLSAALM-MPEAAQASPCHERLYETGCEASACRKQCEEKY-STSTFECVPNPLHPPH 70
          + L+LS A M MP+ A A  C ++LY+ GC A  C+++C  KY + S+ +C+  P  P H
Sbjct: 12 VFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSSQCLSLPPIPFH 71

Query: 71 IACLCFFDC 78
           ACLCF++C
Sbjct: 72 NACLCFYNC 80

The following BLAST results are available for this feature:

BLAST of CmaCh04G027470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G027470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU45_CUCSA	5.3e-09	44.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634350 PE=4 SV=1	[more]
A0A0A0KS76_CUCSA	1.4e-06	43.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634340 PE=4 SV=1	[more]

BLAST of CmaCh04G027470 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G027470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197262\|gb\|KGN52439.1\|	7.6e-09	44.87	hypothetical protein Csa_5G634350 [Cucumis sativus]	[more]
gi\|700197261\|gb\|KGN52438.1\|	2.1e-06	43.48	hypothetical protein Csa_5G634340 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010851	SLR1_pollen-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G027470.1	CmaCh04G027470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	S locus-related glycoprotein 1 binding pollen coat protein	PFAM	PF07333	SLR1-BP	coord: 25..77 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G027470	Csa5G634340	Cucumber (Chinese Long) v2	cmacuB723
CmaCh04G027470	CsaV3_5G037810	Cucumber (Chinese Long) v3	cmacucB0860

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G027470	Watermelon (97103) v2	cmawmbB714
CmaCh04G027470	Watermelon (97103) v2	cmawmbB797
CmaCh04G027470	Wax gourd	cmawgoB0839
CmaCh04G027470	Cucurbita maxima (Rimu)	cmacmaB324
CmaCh04G027470	Cucumber (Gy14) v1	cgycmaB0441
CmaCh04G027470	Cucumber (Gy14) v1	cgycmaB0939
CmaCh04G027470	Cucurbita moschata (Rifu)	cmacmoB692
CmaCh04G027470	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G027470	Wild cucumber (PI 183967)	cmacpiB711
CmaCh04G027470	Wild cucumber (PI 183967)	cmacpiB730
CmaCh04G027470	Cucumber (Chinese Long) v2	cmacuB704
CmaCh04G027470	Melon (DHL92) v3.5.1	cmameB634
CmaCh04G027470	Melon (DHL92) v3.5.1	cmameB685
CmaCh04G027470	Watermelon (Charleston Gray)	cmawcgB608
CmaCh04G027470	Watermelon (97103) v1	cmawmB652
CmaCh04G027470	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G027470	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G027470	Bottle gourd (USVL1VR-Ls)	cmalsiB651
CmaCh04G027470	Bottle gourd (USVL1VR-Ls)	cmalsiB655
CmaCh04G027470	Bottle gourd (USVL1VR-Ls)	cmalsiB658
CmaCh04G027470	Cucumber (Gy14) v2	cgybcmaB132
CmaCh04G027470	Cucumber (Gy14) v2	cgybcmaB647
CmaCh04G027470	Melon (DHL92) v3.6.1	cmamedB720
CmaCh04G027470	Melon (DHL92) v3.6.1	cmamedB750
CmaCh04G027470	Melon (DHL92) v3.6.1	cmamedB769
CmaCh04G027470	Silver-seed gourd	carcmaB0374
CmaCh04G027470	Silver-seed gourd	carcmaB0967
CmaCh04G027470	Cucumber (Chinese Long) v3	cmacucB0818