CmaCh04G020320 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G020320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein L2
Location	Cma_Chr04 : 13062519 .. 13063165 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGCAAAACGATAGAGGAGTTTGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCTGCGGCCTATTTTCATTCTCTTCCCCGCCTGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCAGGACGGATGGCAGCTTAGTGGTCGGACTTCCTACCAGGATGCCTCCTTGCTCGAAAAGCCCCTTTACTATTACTAGTAAAGGCACAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCATTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGTGGTAGATGGGACAAAGCCCGCTTTCTTCGCTCTGCGAATAAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCAAAAGTGGAGAACACATAGCATTCTCTTGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGAAAAAGACTAACGGGCTTGTTGGAGGTGCTGAGCATAAGGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCAATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATTGTGCACCTGTCGTGTGA

mRNA sequence

ATGAAATGCAAAACGATAGAGGAGTTTGCTCCGCCGCATCCTCGAACCTACCACGACCACCATCTGCGGCCTATTTTCATTCTCTTCCCCGCCTGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCAGGACGGATGGCAGCTTAGTGGTCGGACTTCCTACCAGGATGCCTCCTTGCTCGAAAAGCCCCTTTACTATTACTAGTAAAGGCACAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCATTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGTGGTAGATGGGACAAAGCCCGCTTTCTTCGCTCTGCGAATAAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCAAAAGTGGAGAACACATAGCATTCTCTTGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGAAAAAGACTAACGGGCTTGTTGGAGGTGCTGAGCATAAGGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCAATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATTGTGCACCTGTCGTGTGA

Coding sequence (CDS)

ATGAAATGCAAAACGATAGAGGAGTTTGCTCCGCCGCATCCTCGAACCTACCACGACCACCATCTGCGGCCTATTTTCATTCTCTTCCCCGCCTGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCAGGACGGATGGCAGCTTAGTGGTCGGACTTCCTACCAGGATGCCTCCTTGCTCGAAAAGCCCCTTTACTATTACTAGTAAAGGCACAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCATTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGTGGTAGATGGGACAAAGCCCGCTTTCTTCGCTCTGCGAATAAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCAAAAGTGGAGAACACATAGCATTCTCTTGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGAAAAAGACTAACGGGCTTGTTGGAGGTGCTGAGCATAAGGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCAATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATTGTGCACCTGTCGTGTGA

Protein sequence

MKCKTIEEFAPPHPRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTRMPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTKPAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGAEHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPVV

Homology

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BLAST of CmaCh04G020320 vs. Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.4e-56
Identity = 131/226 (57.96%), Postives = 144/226 (63.72%), Query Frame = 1


Query: 2   KCKTIEEFAPPH----PRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           K  TIE+FAPP     P T     L   F   P      K            +VVGLPT 
Sbjct: 82  KMNTIEKFAPPRKILEPTTNTISGLFS-FSFLPGKVDKRKVACFSPGLMAAYVVVGLPTG 141

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP S S     SKG GS KT  KDVFFSAFSS K K ETAS +F SS GFPRI V G K
Sbjct: 142 MPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAVAGAK 201

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+R+KVRGK+TFSLCEVQK RTHSIL AHR+K KA L W+SFRR+ T GLVG A
Sbjct: 202 PAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAA 261

Query: 182 EHKESKPETDQGSLPAKPIGE-----------GPKDGACKVNCAPV 213
            HK+SKP+TDQG+LPAKPIGE             KDGACKV+ APV
Sbjct: 262 GHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

[Close]

BLAST of CmaCh04G020320 vs. Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.0e-37
Identity = 92/168 (54.76%), Postives = 104/168 (61.90%), Query Frame = 1


Query: 85  FSAFSSQKTKGETASHSFGSSLGFPRIVVDGTKPAFFALRIREKVRGKNTFSLCEVQKWR 144
           FS+ SS   +GETAS SFGSSLGFPRI V G KPAFFA R+REK  GK TFSLCE++KWR
Sbjct: 113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWR 172

Query: 145 THSILLAHRMKRKAALDWRSFRRKKTNGLVGGAEHKESKPETDQ---------------- 204
           TH +L AHR+KRKAAL W+S R++KT  LVG AEH ESK + DQ                
Sbjct: 173 THCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSG 232

Query: 205 -----------------------GSLPAK-PIGEGPKDGACKVNCAPV 213
                                  GSLPAK PIGEGPKDGA KV+ APV
Sbjct: 233 RPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPV 280

[Close]

BLAST of CmaCh04G020320 vs. Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=3 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 6.0e-37
Identity = 92/168 (54.76%), Postives = 104/168 (61.90%), Query Frame = 1


Query: 85  FSAFSSQKTKGETASHSFGSSLGFPRIVVDGTKPAFFALRIREKVRGKNTFSLCEVQKWR 144
           FS+ SS   +GETAS SFGSSLGFPRI V G KPAFFA R+REK  GK TFSLCE++KWR
Sbjct: 113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWR 172

Query: 145 THSILLAHRMKRKAALDWRSFRRKKTNGLVGGAEHKESKPETDQ---------------- 204
           TH +L AHR+KRKAAL W+S R++KT  LVG AEH ESK + DQ                
Sbjct: 173 THCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSG 232

Query: 205 -----------------------GSLPAK-PIGEGPKDGACKVNCAPV 213
                                  GSLPAK PIGEGPKDGA KV+ APV
Sbjct: 233 RPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPV 280

[Close]

BLAST of CmaCh04G020320 vs. Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 6.0e-37
Identity = 92/168 (54.76%), Postives = 104/168 (61.90%), Query Frame = 1


Query: 85  FSAFSSQKTKGETASHSFGSSLGFPRIVVDGTKPAFFALRIREKVRGKNTFSLCEVQKWR 144
           FS+ SS   +GETAS SFGSSLGFPRI V G KPAFFA R+REK  GK TFSLCE++KWR
Sbjct: 113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWR 172

Query: 145 THSILLAHRMKRKAALDWRSFRRKKTNGLVGGAEHKESKPETDQ---------------- 204
           TH +L AHR+KRKAAL W+S R++KT  LVG AEH ESK + DQ                
Sbjct: 173 THCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSG 232

Query: 205 -----------------------GSLPAK-PIGEGPKDGACKVNCAPV 213
                                  GSLPAK PIGEGPKDGA KV+ APV
Sbjct: 233 RPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPV 280

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BLAST of CmaCh04G020320 vs. TrEMBL
Match: D5I3E9_CUCPE (Ribosomal protein L2 OS=Cucurbita pepo GN=rpl2 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.7e-76
Identity = 159/215 (73.95%), Postives = 168/215 (78.14%), Query Frame = 1


Query: 2   KCKTIEEFAPPH----PRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           KCKTIEEFAPP     P T     L   F   P      K       +    +VVGLPTR
Sbjct: 83  KCKTIEEFAPPRKILEPTTTTIRGLFS-FSSTPGKVDQRKVACFSPGQMAAYVVVGLPTR 142

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           +PPCSKSPF  TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGSSLGFPRI V G K
Sbjct: 143 IPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSLGFPRIAVAGAK 202

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGKNTFSLCEV+KWRTHSIL AHRMKRKAALDW+SFRR++T+GLVGGA
Sbjct: 203 PAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRRQETDGLVGGA 262

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           EH ESKPETD  SLPAKPIGEGPKDGACKVN APV
Sbjct: 263 EHNESKPETDPASLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh04G020320 vs. TrEMBL
Match: D5I399_CITLA (Ribosomal protein L2 OS=Citrullus lanatus GN=rpl2 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 8.7e-75
Identity = 157/217 (72.35%), Postives = 168/217 (77.42%), Query Frame = 1


Query: 2   KCKTIEEFAPPH----PRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLP 61
           KCKTIEEFAPP     P T     +R +F     P      K       R    +VVGLP
Sbjct: 83  KCKTIEEFAPPRKILEPTTTT---IRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVGLP 142

Query: 62  TRMPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDG 121
           TRMPP SKSPF  TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGSS GFPR+ V G
Sbjct: 143 TRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRVAVAG 202

Query: 122 TKPAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVG 181
            KPAFFA R+R+K+RGKNTFSLCEV+KWRTHSIL AHR+KRKAAL WRSFRR++T GLVG
Sbjct: 203 AKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVG 262

Query: 182 GAEHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           GAEH ESKPETDQGSLPAKPIGEGPKDGACKVN APV
Sbjct: 263 GAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh04G020320 vs. TrEMBL
Match: G3EU27_CUCME (Ribosomal protein L2 OS=Cucumis melo subsp. melo GN=rpl2 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.4e-70
Identity = 151/215 (70.23%), Postives = 160/215 (74.42%), Query Frame = 1


Query: 2   KCKTIEEFAP-PHPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLPT-R 61
           KCKT EEFAP P         +R +F     P      K  S    R    +VVGLPT R
Sbjct: 89  KCKTQEEFAPQPQILEPTTTTIRGLFSFSSPPGKVDQRKVASFSPGRMAAYVVVGLPTTR 148

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP SKSP T T KG GSKKTCAKD+FFSAFSSQKTKGETAS SFGSS  FPR+ V G K
Sbjct: 149 MPPWSKSPDTSTRKGAGSKKTCAKDLFFSAFSSQKTKGETASLSFGSSFAFPRVAVAGAK 208

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGK TFSLCEV+KWRTHSIL AHRMK KAAL WRSFRR++T GLVGGA
Sbjct: 209 PAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAHRMKGKAALSWRSFRRQETLGLVGGA 268

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           EHKESK E DQGSLPAKPIGEGPKDGACKVN  PV
Sbjct: 269 EHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh04G020320 vs. TrEMBL
Match: G3EIZ1_CUCSA (Ribosomal protein L2 OS=Cucumis sativus GN=rpl2 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.9e-69
Identity = 150/215 (69.77%), Postives = 160/215 (74.42%), Query Frame = 1


Query: 2   KCKTIEEFAP-PHPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLPT-R 61
           KCKT EEFAP P         +R +F     P      K  S    R    +VVGLPT R
Sbjct: 89  KCKTQEEFAPKPQILEPTTTTIRGLFSFSSPPGKVDQRKVASFSPGRMAAYVVVGLPTTR 148

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP S+SP T T KG GSKKTCAKD+FFSAFSSQKTKGETAS SFGSS  FPR+ V G K
Sbjct: 149 MPPWSRSPDTSTRKGAGSKKTCAKDLFFSAFSSQKTKGETASLSFGSSFAFPRVAVAGAK 208

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGK TFSLCEV+KWRTHSIL AHRMK KAAL WRSFRR++T GLVGGA
Sbjct: 209 PAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAHRMKGKAALSWRSFRRQETLGLVGGA 268

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           EHKESK E DQGSLPAKPIGEGPKDGACKVN  PV
Sbjct: 269 EHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh04G020320 vs. TrEMBL
Match: A5BK62_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029794 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 5.1e-67
Identity = 147/216 (68.06%), Postives = 159/216 (73.61%), Query Frame = 1


Query: 2   KCKTIEEFAPPH----PRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           KC TIEEFAPP     P T     L   F   P      K            +VVGLPTR
Sbjct: 86  KCNTIEEFAPPRKILEPTTTTIRGLFS-FSSLPGKVDQRKVACFSPGPMAAYVVVGLPTR 145

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP SKSPF  TSKG GSKKTCAKDVFFSAFSS K KGET+S SFGSS GFPRI V G K
Sbjct: 146 MPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSPKAKGETSSLSFGSSFGFPRIAVAGAK 205

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REK+RGKNTFSLCEV+KWRTHSIL AHR+KRKAAL W+SFRR++T GLVG A
Sbjct: 206 PAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQETLGLVGAA 265

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPVV 214
           EH ESKP+TDQG   +KPIGEGPKDGACKV+ APVV
Sbjct: 266 EHNESKPKTDQG-FYSKPIGEGPKDGACKVDRAPVV 297

[Close]

BLAST of CmaCh04G020320 vs. TAIR10
Match: ATMG00560.1 (ATMG00560.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-57
Identity = 131/226 (57.96%), Postives = 144/226 (63.72%), Query Frame = 1


Query: 2   KCKTIEEFAPPH----PRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           K  TIE+FAPP     P T     L   F   P      K            +VVGLPT 
Sbjct: 82  KMNTIEKFAPPRKILEPTTNTISGLFS-FSFLPGKVDKRKVACFSPGLMAAYVVVGLPTG 141

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP S S     SKG GS KT  KDVFFSAFSS K K ETAS +F SS GFPRI V G K
Sbjct: 142 MPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAVAGAK 201

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+R+KVRGK+TFSLCEVQK RTHSIL AHR+K KA L W+SFRR+ T GLVG A
Sbjct: 202 PAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAA 261

Query: 182 EHKESKPETDQGSLPAKPIGE-----------GPKDGACKVNCAPV 213
            HK+SKP+TDQG+LPAKPIGE             KDGACKV+ APV
Sbjct: 262 GHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

[Close]

BLAST of CmaCh04G020320 vs. TAIR10
Match: AT2G07715.1 (AT2G07715.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 214.5 bits (545), Expect = 6.2e-56
Identity = 128/222 (57.66%), Postives = 141/222 (63.51%), Query Frame = 1


Query: 2   KCKTIEEFAPPH----PRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           K  TIE+FAPP     P T     L   F   P      K            +VVGLPT 
Sbjct: 82  KMNTIEKFAPPRKILEPTTNTISGLFS-FSFLPGKVDKRKVACFSPGLMAAYVVVGLPTG 141

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP S S     SKG GS KT  KDVFFSAFSS K K ETAS +F SS GFPRI V G K
Sbjct: 142 MPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSLKAKRETASLAFASSFGFPRIAVAGAK 201

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+R+KVRGK+TFSLCEVQK RTHSIL AHR+K KA L W+SFRR+ T GLVG A
Sbjct: 202 PAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAA 261

Query: 182 EHKESKPETDQGSLPAKPIGE-----------GPKDGACKVN 209
            HK+SKP+TDQG+LPAKPIGE             KDGACKV+
Sbjct: 262 GHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVD 302

[Close]

BLAST of CmaCh04G020320 vs. NCBI nr
Match: gi|295311698|ref|YP_003587363.1| (ribosomal protein L2 [Cucurbita pepo])

HSP 1 Score: 293.1 bits (749), Expect = 3.9e-76
Identity = 159/215 (73.95%), Postives = 168/215 (78.14%), Query Frame = 1


Query: 2   KCKTIEEFAPPH----PRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           KCKTIEEFAPP     P T     L   F   P      K       +    +VVGLPTR
Sbjct: 83  KCKTIEEFAPPRKILEPTTTTIRGLFS-FSSTPGKVDQRKVACFSPGQMAAYVVVGLPTR 142

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           +PPCSKSPF  TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGSSLGFPRI V G K
Sbjct: 143 IPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSLGFPRIAVAGAK 202

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGKNTFSLCEV+KWRTHSIL AHRMKRKAALDW+SFRR++T+GLVGGA
Sbjct: 203 PAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRRQETDGLVGGA 262

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           EH ESKPETD  SLPAKPIGEGPKDGACKVN APV
Sbjct: 263 EHNESKPETDPASLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh04G020320 vs. NCBI nr
Match: gi|295311655|ref|YP_003587229.1| (ribosomal protein L2 [Citrullus lanatus])

HSP 1 Score: 288.1 bits (736), Expect = 1.2e-74
Identity = 157/217 (72.35%), Postives = 168/217 (77.42%), Query Frame = 1


Query: 2   KCKTIEEFAPPH----PRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLP 61
           KCKTIEEFAPP     P T     +R +F     P      K       R    +VVGLP
Sbjct: 83  KCKTIEEFAPPRKILEPTTTT---IRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVGLP 142

Query: 62  TRMPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDG 121
           TRMPP SKSPF  TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGSS GFPR+ V G
Sbjct: 143 TRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRVAVAG 202

Query: 122 TKPAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVG 181
            KPAFFA R+R+K+RGKNTFSLCEV+KWRTHSIL AHR+KRKAAL WRSFRR++T GLVG
Sbjct: 203 AKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVG 262

Query: 182 GAEHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           GAEH ESKPETDQGSLPAKPIGEGPKDGACKVN APV
Sbjct: 263 GAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh04G020320 vs. NCBI nr
Match: gi|345034425|gb|AEN56111.1| (ribosomal protein L2 [Cucumis melo subsp. melo])

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 151/215 (70.23%), Postives = 160/215 (74.42%), Query Frame = 1


Query: 2   KCKTIEEFAP-PHPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLPT-R 61
           KCKT EEFAP P         +R +F     P      K  S    R    +VVGLPT R
Sbjct: 89  KCKTQEEFAPQPQILEPTTTTIRGLFSFSSPPGKVDQRKVASFSPGRMAAYVVVGLPTTR 148

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP SKSP T T KG GSKKTCAKD+FFSAFSSQKTKGETAS SFGSS  FPR+ V G K
Sbjct: 149 MPPWSKSPDTSTRKGAGSKKTCAKDLFFSAFSSQKTKGETASLSFGSSFAFPRVAVAGAK 208

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGK TFSLCEV+KWRTHSIL AHRMK KAAL WRSFRR++T GLVGGA
Sbjct: 209 PAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAHRMKGKAALSWRSFRRQETLGLVGGA 268

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           EHKESK E DQGSLPAKPIGEGPKDGACKVN  PV
Sbjct: 269 EHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh04G020320 vs. NCBI nr
Match: gi|346683377|ref|YP_004849339.1| (ribosomal protein L2 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 2.7e-69
Identity = 150/215 (69.77%), Postives = 160/215 (74.42%), Query Frame = 1


Query: 2   KCKTIEEFAP-PHPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLPT-R 61
           KCKT EEFAP P         +R +F     P      K  S    R    +VVGLPT R
Sbjct: 89  KCKTQEEFAPKPQILEPTTTTIRGLFSFSSPPGKVDQRKVASFSPGRMAAYVVVGLPTTR 148

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP S+SP T T KG GSKKTCAKD+FFSAFSSQKTKGETAS SFGSS  FPR+ V G K
Sbjct: 149 MPPWSRSPDTSTRKGAGSKKTCAKDLFFSAFSSQKTKGETASLSFGSSFAFPRVAVAGAK 208

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGK TFSLCEV+KWRTHSIL AHRMK KAAL WRSFRR++T GLVGGA
Sbjct: 209 PAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAHRMKGKAALSWRSFRRQETLGLVGGA 268

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           EHKESK E DQGSLPAKPIGEGPKDGACKVN  PV
Sbjct: 269 EHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh04G020320 vs. NCBI nr
Match: gi|147791171|emb|CAN61455.1| (hypothetical protein VITISV_029794 [Vitis vinifera])

HSP 1 Score: 262.3 bits (669), Expect = 7.3e-67
Identity = 147/216 (68.06%), Postives = 159/216 (73.61%), Query Frame = 1


Query: 2   KCKTIEEFAPPH----PRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           KC TIEEFAPP     P T     L   F   P      K            +VVGLPTR
Sbjct: 86  KCNTIEEFAPPRKILEPTTTTIRGLFS-FSSLPGKVDQRKVACFSPGPMAAYVVVGLPTR 145

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP SKSPF  TSKG GSKKTCAKDVFFSAFSS K KGET+S SFGSS GFPRI V G K
Sbjct: 146 MPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSPKAKGETSSLSFGSSFGFPRIAVAGAK 205

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REK+RGKNTFSLCEV+KWRTHSIL AHR+KRKAAL W+SFRR++T GLVG A
Sbjct: 206 PAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQETLGLVGAA 265

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPVV 214
           EH ESKP+TDQG   +KPIGEGPKDGACKV+ APVV
Sbjct: 266 EHNESKPKTDQG-FYSKPIGEGPKDGACKVDRAPVV 297

The following BLAST results are available for this feature:

BLAST of CmaCh04G020320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM02_ARATH	4.4e-56	57.96	60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=...	[more]
RM02_ORYSA	6.0e-37	54.76	60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1	[more]
RM02_ORYSI	6.0e-37	54.76	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE...	[more]
RM02_ORYSJ	6.0e-37	54.76	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 ...	[more]

BLAST of CmaCh04G020320 vs. TrEMBL


Match Name	E-value	Identity	Description
D5I3E9_CUCPE	2.7e-76	73.95	Ribosomal protein L2 OS=Cucurbita pepo GN=rpl2 PE=4 SV=1	[more]
D5I399_CITLA	8.7e-75	72.35	Ribosomal protein L2 OS=Citrullus lanatus GN=rpl2 PE=4 SV=1	[more]
G3EU27_CUCME	8.4e-70	70.23	Ribosomal protein L2 OS=Cucumis melo subsp. melo GN=rpl2 PE=4 SV=1	[more]
G3EIZ1_CUCSA	1.9e-69	69.77	Ribosomal protein L2 OS=Cucumis sativus GN=rpl2 PE=4 SV=1	[more]
A5BK62_VITVI	5.1e-67	68.06	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029794 PE=4 SV=1	[more]

BLAST of CmaCh04G020320 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00560.1	2.5e-57	57.96	ATMG00560.1 Nucleic acid-binding, OB-fold-like protein	[more]
AT2G07715.1	6.2e-56	57.66	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CmaCh04G020320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|295311698\|ref\|YP_003587363.1\|	3.9e-76	73.95	ribosomal protein L2 [Cucurbita pepo]	[more]
gi\|295311655\|ref\|YP_003587229.1\|	1.2e-74	72.35	ribosomal protein L2 [Citrullus lanatus]	[more]
gi\|345034425\|gb\|AEN56111.1\|	1.2e-69	70.23	ribosomal protein L2 [Cucumis melo subsp. melo]	[more]
gi\|346683377\|ref\|YP_004849339.1\|	2.7e-69	69.77	ribosomal protein L2 [Cucumis sativus]	[more]
gi\|147791171\|emb\|CAN61455.1\|	7.3e-67	68.06	hypothetical protein VITISV_029794 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020320.1	CmaCh04G020320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G020320	Cucurbita moschata (Rifu)	cmacmoB698
CmaCh04G020320	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G020320	Cucurbita moschata (Rifu)	cmacmoB741
CmaCh04G020320	Wild cucumber (PI 183967)	cmacpiB753
CmaCh04G020320	Cucumber (Chinese Long) v2	cmacuB744
CmaCh04G020320	Melon (DHL92) v3.5.1	cmameB632
CmaCh04G020320	Watermelon (Charleston Gray)	cmawcgB648
CmaCh04G020320	Watermelon (97103) v1	cmawmB674
CmaCh04G020320	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G020320	Bottle gourd (USVL1VR-Ls)	cmalsiB623
CmaCh04G020320	Bottle gourd (USVL1VR-Ls)	cmalsiB683
CmaCh04G020320	Cucumber (Gy14) v2	cgybcmaB657
CmaCh04G020320	Cucumber (Gy14) v2	cgybcmaB663
CmaCh04G020320	Melon (DHL92) v3.6.1	cmamedB717
CmaCh04G020320	Melon (DHL92) v3.6.1	cmamedB747
CmaCh04G020320	Cucumber (Chinese Long) v3	cmacucB0877
CmaCh04G020320	Watermelon (97103) v2	cmawmbB750
CmaCh04G020320	Watermelon (97103) v2	cmawmbB768
CmaCh04G020320	Wax gourd	cmawgoB0908