CmaCh04G020260 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G020260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCma_Chr04 : 12854914 .. 12856412 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTAGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAAACCATTAAAGCTCGTCTTGTAGAAAAGGGTTATACCCAAAGAGAGGGGGTGGACTATGAAGAAACCTTCTCTTCTGTTGCTATGCTTAAATTGATTAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGATAAGACAGTCTTTCTAAACGGAAATCTTGAAGAGAGTATATATATGGCTCTACCAAATGGGTTCATTGAACAGGATCACAAACATAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACCGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATTGTCAACTAGCTTTCCTAGTGTTGTACGTTGACGATATTCTACTCATTGGGAATGATGTGGGACTTCTAACTGACATTAAGCATTGGCTAGCAACATAATTCCAAATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCCAAATTGTTCGGAATCGTAAGAACAAAACACTAGCATTGTCTCAGGCATCGTATATCGACAAAATGTTGATTCGATATAAGATGTAGAACTCCAAGAAAAGATTATTATCTTTCAGGCATGGAGTTCATTTGTTGAAGGAACAAAGTCCTAAGACACCTTAAGAAATTGAGAATATGAGACACATTCCCTATGCATCAGCAGTCGGTAGTTTGATGTATGCCATGCTATGTACCCAACCTGGCATATGCTATGCTGTGGGAATTGTCAGCAGATATCAGTCCAATCCATGACGTGCTCATTGGACTGCCGTTAAGAATATAATCAAGTATCTTAGGACACCGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACACGGTACACTAACTCAGATTTTTAGACTGATGTAGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTTTGAACGAAGGAGCAATAATATGGCGAAGCATAAAGCAAGGTTGCATTTCTGATTCCACCATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGAAAGTTCTTAACTGATTTGGAAGTCATTCCAAATATGCATCTTCTCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTACAAATTCGAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAGCGAAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCACACAGATAGTTTTGGAGCACAACATTGCTGATCCATTTACAAAGCCTCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA

mRNA sequence

ATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTAGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTTTGAACGAAGGAGCAATAATATGGCGAAGCATAAAGCAAGGTTGCATTTCTGATTCCACCATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGAAAGTTCTTAACTGATTTGGAAGTCATTCCAAATATGCATCTTCTCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTACAAATTCGAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAGCGAAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCACACAGATAGTTTTGGAGCACAACATTGCTGATCCATTTACAAAGCCTCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA

Coding sequence (CDS)

ATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTAGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTTTGAACGAAGGAGCAATAATATGGCGAAGCATAAAGCAAGGTTGCATTTCTGATTCCACCATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGAAAGTTCTTAACTGATTTGGAAGTCATTCCAAATATGCATCTTCTCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTACAAATTCGAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAGCGAAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCACACAGATAGTTTTGGAGCACAACATTGCTGATCCATTTACAAAGCCTCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA

Protein sequence

MNLEMESMYFNSVWELVDQPDGVKPISCKWIYKRKRDQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRVM
Homology
[Close]
BLAST of CmaCh04G020260 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.6e-22
Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = 1 

Query: 40   DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
            D+RKS++G +FT + GAI W+S  Q C++ ST EAEY+AA E  KE +WL++FL +L + 
Sbjct: 1188 DNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLH 1247

Query: 100  PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
               ++   +YCD+  A+  SK    H R KHI+ +YH IRE+V    + V +I    N A
Sbjct: 1248 QKEYV---VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPA 1307

Query: 160  DPFTKPLTAKVFE 173
            D  TK +    FE
Sbjct: 1308 DMLTKVVPRNKFE 1317

[Close]
BLAST of CmaCh04G020260 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 98.6 bits (244), Expect = 7.5e-20
Identity = 54/140 (38.57%), Postives = 81/140 (57.86%), Query Frame = 1 

Query: 42   RKSTSGSVFTLNE-GAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVIP 101
            RKST+G +F + +   I W + +Q  ++ S+ EAEY+A  EA +E++WL+  LT + +  
Sbjct: 1263 RKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI-- 1322

Query: 102  NMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIAD 161
             +   + +Y DN G ++ +  P  HKR KHI+ KYH  RE VQ   + +  I  E+ +AD
Sbjct: 1323 KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLAD 1382

Query: 162  PFTKPLTAKVFEGHLVSLGL 181
             FTKPL A  F      LGL
Sbjct: 1383 IFTKPLPAARFVELRDKLGL 1400

[Close]
BLAST of CmaCh04G020260 vs. TrEMBL
Match: A5AUE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021035 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-53
Identity = 103/144 (71.53%), Postives = 122/144 (84.72%), Query Frame = 1 

Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           DSRKSTS +VFTL  GAIIWRS+KQ C++DSTMEAEYVAACEAAKE+VWLR+FL +LEV+
Sbjct: 521 DSRKSTSEAVFTLGGGAIIWRSVKQTCVADSTMEAEYVAACEAAKEAVWLREFLKELEVV 580

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
           PNMH  + LYCDNSGAV N+KEPR+H++GKHIERK+HL+REIV RGDV V +I   +NIA
Sbjct: 581 PNMHEPIRLYCDNSGAVANAKEPRNHRKGKHIERKFHLVREIVSRGDVSVEKIASANNIA 640

Query: 160 DPFTKPLTAKVFEGHLVSLGLRVM 184
           DPFTK L A+ FE HL  +GLR M
Sbjct: 641 DPFTKTLPARSFEQHLEGMGLREM 664

[Close]
BLAST of CmaCh04G020260 vs. TrEMBL
Match: W9S7U3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027980 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.1e-53
Identity = 103/149 (69.13%), Postives = 123/149 (82.55%), Query Frame = 1 

Query: 35  KRDQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLT 94
           +R   DSRKSTSG+VFTL  GAIIWRSIKQ CI+DST+EAEYVAACEAAKE+VWLR+FL 
Sbjct: 73  RRSDRDSRKSTSGAVFTLGNGAIIWRSIKQSCIADSTVEAEYVAACEAAKEAVWLREFLK 132

Query: 95  DLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVL 154
           +LEV+PNMH  + LYCDNSGAV N+KEPR+H++GKHIERK+HL+REIV RGDV V ++  
Sbjct: 133 ELEVVPNMHEPIILYCDNSGAVANAKEPRNHRKGKHIERKFHLVREIVSRGDVSVEKVAS 192

Query: 155 EHNIADPFTKPLTAKVFEGHLVSLGLRVM 184
            +NIADPF K L A  FE HL ++ LR M
Sbjct: 193 ANNIADPFIKTLPAGSFERHLENMRLRDM 221

[Close]
BLAST of CmaCh04G020260 vs. TrEMBL
Match: A5BYL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000740 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-51
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 1 

Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           DSRKSTS +VFTL  GAIIWRS+KQ C+ DSTMEAEYVAACEAAKE+VWLR+FL +LEV+
Sbjct: 83  DSRKSTSRAVFTLGGGAIIWRSVKQTCVVDSTMEAEYVAACEAAKEAVWLREFLKELEVV 142

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
           PNMH  + LYCDNSGAV N+KEPR+H++GKHIERK+HL+R++V RGDV V  I   +NIA
Sbjct: 143 PNMHEPIRLYCDNSGAVANAKEPRNHRKGKHIERKFHLVRKVVSRGDVSVENITYANNIA 202

Query: 160 DPFTKPLTAKVFEGHLVSLGLRVM 184
           DPFTK L A+  E HL  +GLR M
Sbjct: 203 DPFTKTLPARSLEQHLEGMGLRDM 226

[Close]
BLAST of CmaCh04G020260 vs. TrEMBL
Match: W9S4N9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008147 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1 

Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           DSRKSTSGSV+ L+ G+++WRSIKQ CI+DSTMEAEYVAACE AKE+VWL+KFL  LEV+
Sbjct: 28  DSRKSTSGSVYILHGGSVVWRSIKQTCIADSTMEAEYVAACETAKEAVWLKKFLVSLEVV 87

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
           P+    + LYCDNSGAV NSKEPRSHKR KHIERKYHLIREIVQRGDV VT+I +  N+A
Sbjct: 88  PDADRPMVLYCDNSGAVANSKEPRSHKRSKHIERKYHLIREIVQRGDVEVTKISIHDNLA 147

Query: 160 DPFTKPLTAKVFEGHLVSLGLR 182
           DPFTK L+ KVF  HL    +R
Sbjct: 148 DPFTKALSGKVFVSHLEGFRMR 169

[Close]
BLAST of CmaCh04G020260 vs. TrEMBL
Match: A5BQ76_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019364 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51
Identity = 105/167 (62.87%), Postives = 128/167 (76.65%), Query Frame = 1 

Query: 16   LVDQPDGVKPISCKWIYKRKRDQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAE 75
            LV Q + + PI   +     +   DSRKSTSG+VF L  GAI WRSIKQ C++DSTMEA+
Sbjct: 1375 LVFQSENLVPIG--YTDSDFQSDQDSRKSTSGNVFVLGSGAISWRSIKQTCVADSTMEAK 1434

Query: 76   YVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKY 135
            YVAA EAAKE VWLR FL DL V+P++   +TLYCDNSGAV NSKEPRSHKR KHIERKY
Sbjct: 1435 YVAASEAAKEVVWLRNFLLDLGVVPSVQSPITLYCDNSGAVANSKEPRSHKRAKHIERKY 1494

Query: 136  HLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRV 183
            HLIR+IVQRGDV+V +I  E+N+ADPFTK L++  FE H+  +G++V
Sbjct: 1495 HLIRDIVQRGDVVVMKIASENNLADPFTKSLSSTTFERHVEGMGVKV 1539

[Close]
BLAST of CmaCh04G020260 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-12
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 1 

Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           D+R+ST+G    L    I W+S KQ  +S S+ EAEY A   A  E +WL +F  +L++ 
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIRE 141
            +   L  L+CDN+ A+  +     H+R KHIE   H +RE
Sbjct: 515 LSKPTL--LFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]
BLAST of CmaCh04G020260 vs. NCBI nr
Match: gi|147768021|emb|CAN69397.1| (hypothetical protein VITISV_021035 [Vitis vinifera])

HSP 1 Score: 216.9 bits (551), Expect = 3.0e-53
Identity = 103/144 (71.53%), Postives = 122/144 (84.72%), Query Frame = 1 

Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           DSRKSTS +VFTL  GAIIWRS+KQ C++DSTMEAEYVAACEAAKE+VWLR+FL +LEV+
Sbjct: 521 DSRKSTSEAVFTLGGGAIIWRSVKQTCVADSTMEAEYVAACEAAKEAVWLREFLKELEVV 580

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
           PNMH  + LYCDNSGAV N+KEPR+H++GKHIERK+HL+REIV RGDV V +I   +NIA
Sbjct: 581 PNMHEPIRLYCDNSGAVANAKEPRNHRKGKHIERKFHLVREIVSRGDVSVEKIASANNIA 640

Query: 160 DPFTKPLTAKVFEGHLVSLGLRVM 184
           DPFTK L A+ FE HL  +GLR M
Sbjct: 641 DPFTKTLPARSFEQHLEGMGLREM 664

[Close]
BLAST of CmaCh04G020260 vs. NCBI nr
Match: gi|703155895|ref|XP_010111323.1| (hypothetical protein L484_027980 [Morus notabilis])

HSP 1 Score: 215.3 bits (547), Expect = 8.8e-53
Identity = 103/149 (69.13%), Postives = 123/149 (82.55%), Query Frame = 1 

Query: 35  KRDQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLT 94
           +R   DSRKSTSG+VFTL  GAIIWRSIKQ CI+DST+EAEYVAACEAAKE+VWLR+FL 
Sbjct: 73  RRSDRDSRKSTSGAVFTLGNGAIIWRSIKQSCIADSTVEAEYVAACEAAKEAVWLREFLK 132

Query: 95  DLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVL 154
           +LEV+PNMH  + LYCDNSGAV N+KEPR+H++GKHIERK+HL+REIV RGDV V ++  
Sbjct: 133 ELEVVPNMHEPIILYCDNSGAVANAKEPRNHRKGKHIERKFHLVREIVSRGDVSVEKVAS 192

Query: 155 EHNIADPFTKPLTAKVFEGHLVSLGLRVM 184
            +NIADPF K L A  FE HL ++ LR M
Sbjct: 193 ANNIADPFIKTLPAGSFERHLENMRLRDM 221

[Close]
BLAST of CmaCh04G020260 vs. NCBI nr
Match: gi|147843740|emb|CAN83735.1| (hypothetical protein VITISV_000740 [Vitis vinifera])

HSP 1 Score: 211.1 bits (536), Expect = 1.7e-51
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 1 

Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           DSRKSTS +VFTL  GAIIWRS+KQ C+ DSTMEAEYVAACEAAKE+VWLR+FL +LEV+
Sbjct: 83  DSRKSTSRAVFTLGGGAIIWRSVKQTCVVDSTMEAEYVAACEAAKEAVWLREFLKELEVV 142

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
           PNMH  + LYCDNSGAV N+KEPR+H++GKHIERK+HL+R++V RGDV V  I   +NIA
Sbjct: 143 PNMHEPIRLYCDNSGAVANAKEPRNHRKGKHIERKFHLVRKVVSRGDVSVENITYANNIA 202

Query: 160 DPFTKPLTAKVFEGHLVSLGLRVM 184
           DPFTK L A+  E HL  +GLR M
Sbjct: 203 DPFTKTLPARSLEQHLEGMGLRDM 226

[Close]
BLAST of CmaCh04G020260 vs. NCBI nr
Match: gi|703140865|ref|XP_010107341.1| (hypothetical protein L484_008147 [Morus notabilis])

HSP 1 Score: 210.7 bits (535), Expect = 2.2e-51
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1 

Query: 40  DSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAEYVAACEAAKESVWLRKFLTDLEVI 99
           DSRKSTSGSV+ L+ G+++WRSIKQ CI+DSTMEAEYVAACE AKE+VWL+KFL  LEV+
Sbjct: 28  DSRKSTSGSVYILHGGSVVWRSIKQTCIADSTMEAEYVAACETAKEAVWLKKFLVSLEVV 87

Query: 100 PNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIVLEHNIA 159
           P+    + LYCDNSGAV NSKEPRSHKR KHIERKYHLIREIVQRGDV VT+I +  N+A
Sbjct: 88  PDADRPMVLYCDNSGAVANSKEPRSHKRSKHIERKYHLIREIVQRGDVEVTKISIHDNLA 147

Query: 160 DPFTKPLTAKVFEGHLVSLGLR 182
           DPFTK L+ KVF  HL    +R
Sbjct: 148 DPFTKALSGKVFVSHLEGFRMR 169

[Close]
BLAST of CmaCh04G020260 vs. NCBI nr
Match: gi|147815925|emb|CAN77149.1| (hypothetical protein VITISV_019364 [Vitis vinifera])

HSP 1 Score: 210.7 bits (535), Expect = 2.2e-51
Identity = 105/167 (62.87%), Postives = 128/167 (76.65%), Query Frame = 1 

Query: 16   LVDQPDGVKPISCKWIYKRKRDQTDSRKSTSGSVFTLNEGAIIWRSIKQGCISDSTMEAE 75
            LV Q + + PI   +     +   DSRKSTSG+VF L  GAI WRSIKQ C++DSTMEA+
Sbjct: 1375 LVFQSENLVPIG--YTDSDFQSDQDSRKSTSGNVFVLGSGAISWRSIKQTCVADSTMEAK 1434

Query: 76   YVAACEAAKESVWLRKFLTDLEVIPNMHLLVTLYCDNSGAVTNSKEPRSHKRGKHIERKY 135
            YVAA EAAKE VWLR FL DL V+P++   +TLYCDNSGAV NSKEPRSHKR KHIERKY
Sbjct: 1435 YVAASEAAKEVVWLRNFLLDLGVVPSVQSPITLYCDNSGAVANSKEPRSHKRAKHIERKY 1494

Query: 136  HLIREIVQRGDVIVTQIVLEHNIADPFTKPLTAKVFEGHLVSLGLRV 183
            HLIR+IVQRGDV+V +I  E+N+ADPFTK L++  FE H+  +G++V
Sbjct: 1495 HLIRDIVQRGDVVVMKIASENNLADPFTKSLSSTTFERHVEGMGVKV 1539

The following BLAST results are available for this feature:
BLAST of CmaCh04G020260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC3.6e-2242.11Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME7.5e-2038.57Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
BLAST of CmaCh04G020260 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AUE7_VITVI2.1e-5371.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021035 PE=4 SV=1[more]
W9S7U3_9ROSA6.1e-5369.13Uncharacterized protein OS=Morus notabilis GN=L484_027980 PE=4 SV=1[more]
A5BYL9_VITVI1.2e-5169.44Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000740 PE=4 SV=1[more]
W9S4N9_9ROSA1.5e-5171.13Uncharacterized protein OS=Morus notabilis GN=L484_008147 PE=4 SV=1[more]
A5BQ76_VITVI1.5e-5162.87Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019364 PE=4 SV=1[more]
BLAST of CmaCh04G020260 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.11.6e-1238.61 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
BLAST of CmaCh04G020260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147768021|emb|CAN69397.1|3.0e-5371.53hypothetical protein VITISV_021035 [Vitis vinifera][more]
gi|703155895|ref|XP_010111323.1|8.8e-5369.13hypothetical protein L484_027980 [Morus notabilis][more]
gi|147843740|emb|CAN83735.1|1.7e-5169.44hypothetical protein VITISV_000740 [Vitis vinifera][more]
gi|703140865|ref|XP_010107341.1|2.2e-5171.13hypothetical protein L484_008147 [Morus notabilis][more]
gi|147815925|emb|CAN77149.1|2.2e-5162.87hypothetical protein VITISV_019364 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G020260.1CmaCh04G020260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 11..41
score: 1.
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..103
score: 5.2
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 1..103
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G020260Cucurbita pepo (Zucchini)cmacpeB721
CmaCh04G020260Bottle gourd (USVL1VR-Ls)cmalsiB623
CmaCh04G020260Bottle gourd (USVL1VR-Ls)cmalsiB683
CmaCh04G020260Cucumber (Gy14) v2cgybcmaB657
CmaCh04G020260Cucumber (Gy14) v2cgybcmaB663
CmaCh04G020260Melon (DHL92) v3.6.1cmamedB717
CmaCh04G020260Melon (DHL92) v3.6.1cmamedB747
CmaCh04G020260Cucumber (Chinese Long) v3cmacucB0877
CmaCh04G020260Watermelon (97103) v2cmawmbB750
CmaCh04G020260Watermelon (97103) v2cmawmbB768
CmaCh04G020260Wax gourdcmawgoB0908
CmaCh04G020260Cucurbita moschata (Rifu)cmacmoB698
CmaCh04G020260Cucurbita moschata (Rifu)cmacmoB729
CmaCh04G020260Cucurbita moschata (Rifu)cmacmoB741
CmaCh04G020260Wild cucumber (PI 183967)cmacpiB753
CmaCh04G020260Cucumber (Chinese Long) v2cmacuB744
CmaCh04G020260Melon (DHL92) v3.5.1cmameB632
CmaCh04G020260Watermelon (Charleston Gray)cmawcgB648
CmaCh04G020260Watermelon (97103) v1cmawmB674