CmaCh04G020160 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G020160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	NADH-ubiquinone oxidoreductase chain
Location	Cma_Chr04 : 12782223 .. 12782905 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTAAGGATCAAGTCTTTGCAACCGAAGTTTTCCGAGGAGCCGAGTGACGTGCCAGCGCAACTAATTGAGTGCCAGCACGTAACAGTGCTGTCAGTAATCTTGGAGCCTGATCCTTTCAAACGAAGAACTTTCGAGTGTGTGCTTTTGATTGCTACTAGCGCGCTTTACTAAAAAGACTCGGCATTCAGGCGAGCCACCCGGTGGTGTGGTACGAAGTGAGTTTAGTACGCCCGGCCAAAACAGCTCTGAAACAAACAAAAAAAAGGTGTGTGCCGCACTCACGAGGGACTGCTAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCAGAGCGAATCCGGAAAGATTGTCTCAGTTCAGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATTGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATGGGTTTCACCCGAAGCATCGGACCAATTCTCACCCATGACTTCCGTGTCACACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGCCGCATACCACGGTGGGGTCTTCGACTGGGATGAAGTTGTAA

mRNA sequence

ATGCGCCTAAGGATCAAGTCTTTGCAACCGAAGTTTTCCGAGGAGCCGAGTGACGTGCCAGCGCAACTAATTGAGTGCCAGCACCGCGCTTTACTAAAAAGACTCGGCATTCAGGCGAGCCACCCGGTGGTGTGGTACGAAGTGAGTTTAGTACGCCCGGCCAAAACAGCTCTGAAACAAACAAAAAAAAGGTGTGTGCCGCACTCACGAGGGACTGCTAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCAGAGCGAATCCGGAAAGATTGTCTCAGTTCAGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATTGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATGGGTTTCACCCGAAGCATCGGACCAATTCTCACCCATGACTTCCGTGTCACACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGCCGCATACCACGGTGGGGTCTTCGACTGGGATGAAGTTGTAA

Coding sequence (CDS)

ATGCGCCTAAGGATCAAGTCTTTGCAACCGAAGTTTTCCGAGGAGCCGAGTGACGTGCCAGCGCAACTAATTGAGTGCCAGCACCGCGCTTTACTAAAAAGACTCGGCATTCAGGCGAGCCACCCGGTGGTGTGGTACGAAGTGAGTTTAGTACGCCCGGCCAAAACAGCTCTGAAACAAACAAAAAAAAGGTGTGTGCCGCACTCACGAGGGACTGCTAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCAGAGCGAATCCGGAAAGATTGTCTCAGTTCAGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATTGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATGGGTTTCACCCGAAGCATCGGACCAATTCTCACCCATGACTTCCGTGTCACACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGCCGCATACCACGGTGGGGTCTTCGACTGGGATGAAGTTGTAA

Protein sequence

MRLRIKSLQPKFSEEPSDVPAQLIECQHRALLKRLGIQASHPVVWYEVSLVRPAKTALKQTKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVVLLPHTTVGSSTGMKL

Homology

[Close]

BLAST of CmaCh04G020160 vs. TrEMBL
Match: S8D505_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_00256 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 4.3e-76
Identity = 148/199 (74.37%), Postives = 158/199 (79.40%), Query Frame = 1


Query: 1   MRLRIKSLQPKFSEEPSDVPAQLIECQHRALLKRLGIQASHPVVWYEVSLVRPAKTALKQ 60
           MRLR KS QPK +EEPSDVPA LIECQH A+  +                  P K    +
Sbjct: 1   MRLRRKSFQPKRAEEPSDVPALLIECQHYAVSNKYA----------------PPKLRAPE 60

Query: 61  TKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSS 120
            +KR VPHSR TASDILEEGGD+VKSAWPLWAGPHTCYNGN NGKQGCKAERIRKDCLSS
Sbjct: 61  ERKRRVPHSRRTASDILEEGGDNVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSS 120

Query: 121 DCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQ 180
           DCSLQLGNMKL+SLVIA QHAAVNMYPGPVHTARHTLG+GF RSIGP + HDF  TLVPQ
Sbjct: 121 DCSLQLGNMKLKSLVIAHQHAAVNMYPGPVHTARHTLGIGFARSIGPTIAHDFCGTLVPQ 180

Query: 181 RLLVVLLPHTTVGSSTGMK 200
           RLLVVLL HTTVGSSTG+K
Sbjct: 181 RLLVVLLAHTTVGSSTGVK 183

[Close]

BLAST of CmaCh04G020160 vs. TrEMBL
Match: R4IV41_VICFA (Uncharacterized protein OS=Vicia faba GN=rrn18 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-66
Identity = 123/134 (91.79%), Postives = 129/134 (96.27%), Query Frame = 1


Query: 66  VPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQ 125
           +PHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGN NGKQGCKAERIRKDCLSSDCSLQ
Sbjct: 1   MPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ 60

Query: 126 LGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVV 185
           LGNMKLESLVIADQHAAVNMYPGPVHTARHTLG+GF RSIGP++THDF V LVPQRLLVV
Sbjct: 61  LGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITHDFCVPLVPQRLLVV 120

Query: 186 LLPHTTVGSSTGMK 200
           LL HTTVGSSTG+K
Sbjct: 121 LLAHTTVGSSTGVK 134

[Close]

BLAST of CmaCh04G020160 vs. TrEMBL
Match: K4BH93_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-58
Identity = 118/149 (79.19%), Postives = 125/149 (83.89%), Query Frame = 1


Query: 52  RPAKTALKQTKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAE 111
           R  K    Q +   +  S  TASDILEEGGDDVKSA PLWAG HTCYNGN NGKQGCKAE
Sbjct: 53  RGKKRNQNQNRNLVLRKSMLTASDILEEGGDDVKSALPLWAGTHTCYNGNYNGKQGCKAE 112

Query: 112 RIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTH 171
           RI KDCLSSDCSLQLGNMK+ES+VIADQHAAVNMYPGPVHTA HTLG+GF RSIGP++TH
Sbjct: 113 RIWKDCLSSDCSLQLGNMKVESIVIADQHAAVNMYPGPVHTACHTLGIGFARSIGPMITH 172

Query: 172 DFRVTLVPQRLLVVLLPHTTVGSSTGMKL 201
           DF  TLVPQR LVVLL HTTVGSSTGMKL
Sbjct: 173 DFCDTLVPQRPLVVLLVHTTVGSSTGMKL 201

[Close]

BLAST of CmaCh04G020160 vs. TrEMBL
Match: A0A0C4B3M7_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 109/123 (88.62%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 77  LEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVI 136
           +EEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAE+IRKDCLSSDCSLQLGNM L+SLVI
Sbjct: 1   MEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAEQIRKDCLSSDCSLQLGNMNLKSLVI 60

Query: 137 ADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVVLLPHTTVGSST 196
           ADQHAAVNMYPGPVHT RHTLG+GF RSIGP++THDF V LVPQR LVVLL HTTVGSST
Sbjct: 61  ADQHAAVNMYPGPVHTVRHTLGIGFARSIGPMITHDFCVPLVPQRPLVVLLAHTTVGSST 120

Query: 197 GMK 200
           G K
Sbjct: 121 GAK 123

[Close]

BLAST of CmaCh04G020160 vs. TrEMBL
Match: K4D964_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.5e-47
Identity = 96/111 (86.49%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 89  PLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPG 148
           P  AGPHTCYNGN N KQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPG
Sbjct: 8   PYGAGPHTCYNGNYNRKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPG 67

Query: 149 PVHTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVVLLPHTTVGSSTGMK 200
            VHTA HTLG+GF RSIGP++THDF  TLVPQR LVVLL HTTVGSSTG+K
Sbjct: 68  SVHTACHTLGIGFARSIGPMITHDFCGTLVPQRPLVVLLAHTTVGSSTGVK 118

[Close]

BLAST of CmaCh04G020160 vs. NCBI nr
Match: gi|527209880|gb|EPS74490.1| (hypothetical protein M569_00256 [Genlisea aurea])

HSP 1 Score: 292.4 bits (747), Expect = 6.2e-76
Identity = 148/199 (74.37%), Postives = 158/199 (79.40%), Query Frame = 1


Query: 1   MRLRIKSLQPKFSEEPSDVPAQLIECQHRALLKRLGIQASHPVVWYEVSLVRPAKTALKQ 60
           MRLR KS QPK +EEPSDVPA LIECQH A+  +                  P K    +
Sbjct: 1   MRLRRKSFQPKRAEEPSDVPALLIECQHYAVSNKYA----------------PPKLRAPE 60

Query: 61  TKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSS 120
            +KR VPHSR TASDILEEGGD+VKSAWPLWAGPHTCYNGN NGKQGCKAERIRKDCLSS
Sbjct: 61  ERKRRVPHSRRTASDILEEGGDNVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSS 120

Query: 121 DCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQ 180
           DCSLQLGNMKL+SLVIA QHAAVNMYPGPVHTARHTLG+GF RSIGP + HDF  TLVPQ
Sbjct: 121 DCSLQLGNMKLKSLVIAHQHAAVNMYPGPVHTARHTLGIGFARSIGPTIAHDFCGTLVPQ 180

Query: 181 RLLVVLLPHTTVGSSTGMK 200
           RLLVVLL HTTVGSSTG+K
Sbjct: 181 RLLVVLLAHTTVGSSTGVK 183

[Close]

BLAST of CmaCh04G020160 vs. NCBI nr
Match: gi|442803208|gb|AGC78943.1| (hypothetical protein (mitochondrion) [Vicia faba])

HSP 1 Score: 260.8 bits (665), Expect = 2.0e-66
Identity = 123/134 (91.79%), Postives = 129/134 (96.27%), Query Frame = 1


Query: 66  VPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQ 125
           +PHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGN NGKQGCKAERIRKDCLSSDCSLQ
Sbjct: 1   MPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQ 60

Query: 126 LGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVV 185
           LGNMKLESLVIADQHAAVNMYPGPVHTARHTLG+GF RSIGP++THDF V LVPQRLLVV
Sbjct: 61  LGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITHDFCVPLVPQRLLVV 120

Query: 186 LLPHTTVGSSTGMK 200
           LL HTTVGSSTG+K
Sbjct: 121 LLAHTTVGSSTGVK 134

[Close]

BLAST of CmaCh04G020160 vs. NCBI nr
Match: gi|94502665|ref|YP_588403.1| (hypothetical protein ZeamMp158 (mitochondrion) [Zea mays subsp. mays])

HSP 1 Score: 152.5 bits (384), Expect = 7.7e-34
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 62  KKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSD 121
           +KRCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSD
Sbjct: 43  RKRCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSD 102

Query: 122 CSLQLGNMK 131
           CSLQLGNMK
Sbjct: 103 CSLQLGNMK 111

[Close]

BLAST of CmaCh04G020160 vs. NCBI nr
Match: gi|775286450|dbj|GAN86215.1| (hypothetical protein Gain_0022_002 [Komagataeibacter intermedius TF2])

HSP 1 Score: 140.2 bits (352), Expect = 3.9e-30
Identity = 68/97 (70.10%), Postives = 76/97 (78.35%), Query Frame = 1


Query: 68  HSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLG 127
           HS+GTA D  EEGGDDVKS+WPL  G HTCYNG D+GK G   E I K  LSSDC+LQL 
Sbjct: 4   HSKGTAGDKPEEGGDDVKSSWPLCPGLHTCYNGGDSGKPGGDTEPISKSRLSSDCTLQLE 63

Query: 128 NMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRS 165
            MK+ESLVIADQHAAVN +PG VHTARHT+G+G T S
Sbjct: 64  CMKVESLVIADQHAAVNTFPGLVHTARHTMGVGLTLS 100

[Close]

BLAST of CmaCh04G020160 vs. NCBI nr
Match: gi|775290090|dbj|GAN74957.1| (hypothetical protein Apmu_0247_01 [Acidiphilium multivorum AIU301])

HSP 1 Score: 139.4 bits (350), Expect = 6.7e-30
Identity = 78/132 (59.09%), Postives = 85/132 (64.39%), Query Frame = 1


Query: 68  HSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLG 127
           HS GTA D  EEGGDDVKS+WPL  G HTCYNG D+GK G   E I K  LSSDC+LQL 
Sbjct: 51  HSEGTAGDKPEEGGDDVKSSWPLCPGLHTCYNGGDSGKPGGDTELISKSRLSSDCTLQLE 110

Query: 128 NMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVVLL 187
            MK+ESLVIADQHAAVN +PG VHTARHT+G G T S              PQ       
Sbjct: 111 CMKVESLVIADQHAAVNTFPGLVHTARHTMGFGLTLS----------WCANPQG-----R 167

Query: 188 PHTTVGSSTGMK 200
             TTVGS TG+K
Sbjct: 171 QPTTVGSETGVK 167

The following BLAST results are available for this feature:

BLAST of CmaCh04G020160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G020160 vs. TrEMBL


Match Name	E-value	Identity	Description
S8D505_9LAMI	4.3e-76	74.37	Uncharacterized protein OS=Genlisea aurea GN=M569_00256 PE=4 SV=1	[more]
R4IV41_VICFA	1.4e-66	91.79	Uncharacterized protein OS=Vicia faba GN=rrn18 PE=4 SV=1	[more]
K4BH93_SOLLC	1.1e-58	79.19	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0C4B3M7_WHEAT	1.4e-58	88.62	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
K4D964_SOLLC	2.5e-47	86.49	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CmaCh04G020160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G020160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|527209880\|gb\|EPS74490.1\|	6.2e-76	74.37	hypothetical protein M569_00256 [Genlisea aurea]	[more]
gi\|442803208\|gb\|AGC78943.1\|	2.0e-66	91.79	hypothetical protein (mitochondrion) [Vicia faba]	[more]
gi\|94502665\|ref\|YP_588403.1\|	7.7e-34	97.10	hypothetical protein ZeamMp158 (mitochondrion) [Zea mays subsp. mays]	[more]
gi\|775286450\|dbj\|GAN86215.1\|	3.9e-30	70.10	hypothetical protein Gain_0022_002 [Komagataeibacter intermedius TF2]	[more]
gi\|775290090\|dbj\|GAN74957.1\|	6.7e-30	59.09	hypothetical protein Apmu_0247_01 [Acidiphilium multivorum AIU301]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020160.1	CmaCh04G020160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 1..200 score: 3.7
None	No IPR available	PANTHER	PTHR34890:SF1	SUBFAMILY NOT NAMED	coord: 1..200 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G020160	Watermelon (97103) v1	cmawmB674
CmaCh04G020160	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G020160	Bottle gourd (USVL1VR-Ls)	cmalsiB623
CmaCh04G020160	Bottle gourd (USVL1VR-Ls)	cmalsiB683
CmaCh04G020160	Cucumber (Gy14) v2	cgybcmaB657
CmaCh04G020160	Cucumber (Gy14) v2	cgybcmaB663
CmaCh04G020160	Melon (DHL92) v3.6.1	cmamedB717
CmaCh04G020160	Melon (DHL92) v3.6.1	cmamedB747
CmaCh04G020160	Cucumber (Chinese Long) v3	cmacucB0877
CmaCh04G020160	Watermelon (97103) v2	cmawmbB750
CmaCh04G020160	Watermelon (97103) v2	cmawmbB768
CmaCh04G020160	Wax gourd	cmawgoB0908
CmaCh04G020160	Cucurbita moschata (Rifu)	cmacmoB698
CmaCh04G020160	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G020160	Cucurbita moschata (Rifu)	cmacmoB741
CmaCh04G020160	Wild cucumber (PI 183967)	cmacpiB753
CmaCh04G020160	Cucumber (Chinese Long) v2	cmacuB744
CmaCh04G020160	Melon (DHL92) v3.5.1	cmameB632
CmaCh04G020160	Watermelon (Charleston Gray)	cmawcgB648