CmaCh04G019820 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G019820
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH-ubiquinone oxidoreductase chain 1
LocationCma_Chr04 : 11599823 .. 11601636 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAACTCGTTGATTGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCTTTCTAGGAGCATTACAATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCACCTTGTGAGCGCGTTTGGATCTGCGAAGGCAATCACTCGGATGTTCTCCTAACCCAACTCGGGGACGGACTGGAGGGAATCGCAGCATGGGGAATGTCCGCGTCTCGTCGCAAGGCTCATTTTGAGTTGTGGGTCGGGGGTTTATCTGATCAAGGGCCGGGGCACAAGGGTCCTGATACTATCCAGGTGCGAAGAACCACGGGGGTGACTGCAATGAGCAGAAATCTCACTTACCGGCCTAAACGACGAGCAAACACTCGAACGTGAGAGCAAGGGATCACCCAAGAAATGGACGAGCTCCAAGGAGGGAGGCAAGAACCATGCTTTCAGAGACCTAACCCAACCCAACGGTCCCGAATCTTATCTGAATTGCTAGAATAACTGACTAAGCCATGCCTATATATAGGCTCATTCTTCAAACGGCGCGGTGCCAAGCCTTTAGGTTGTTTAAGTAGATTAGGTGACAGATCGGCCATAGCAGTACTCCGGGATATAAACCAGGGAAACAAATGTCGAGCATACGACGATGCCGCCCATTTTCATTTCGTGGAAGTCCCCGCAAGAGAAAAGAAAGGGCTGTAGGTGATGGTGCGTTCTGCTTCTTATCTAGAGAGGGAGTAAGGAGTAAGTAGCTCGACCGATAGGGAGAGAGAGGGGCGAAGCTGTGAGACGAGAAGAGGGGCGCTGAAATCGTTCCTATTGGATTGGATCGTGCGCATCAGCTGGTAGAGATGAATGATGAATAAAGGCGGGCCGCTTCAACGGGACCTATTCTCTTAATAGGCGGCAAAGTAGAATAGGAAAGGGGCCGAGTGATGAGTGCCTTTTTAGCCTTTTTCTAAAGACTCTCATGTGAAGCTAACATGGCTCGCTACATACAAGTATAGCCAAAGAAAGATGAGACGGGACAGACGGTCAGAGGCCGCAGCGGGACTACCATAGGAAAGCCCGCCCCCTCCGGCTAACATAGAAAGTGATTCCCATAACTAGTCTCTATGTGAATCTCTTCCCAACCAGCCGAATCGGGCCACCATTTGGGGTGGGAATGGCTCAGCCCACATGCATCATTTGATGAAAGCACTCCAGTTCAGTCGCCTCCTCGAAGTGTCTTGTCTACCACGCTTTCCCTCCCTCAAAACAATGCTCCTCACCAAAAGCCCTTGGGGCAACACAGCAATGAGTAGTTCGCTCCAGGACTCAACCCCCTCGAGAGCCGGATGTCGGCCGAGATGGAGCTAGAAGCCAACCTAGACTTTCCTGGGGCTTGTCCCAACATCTAAATCAAATTTTTGGCAGGCTAGAAAAGGAACCAGCCCAGCCTCGAAAATCAAGCTTTGCGTGGTATGCCCTGCCTATTCACTCGGACAATGCTATGAACACGAAAGTGTGCAGTTCCGCCCCCTTCTCCCATGCTGAGTCACAGGCAGCGCCTCAGAAAGCACGGACGAGCCACATGTAGGAAAACTTGCACGTGTGGTTCTGGCCGGGGACCCCGGTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTACCAGAAACTAATCGAGCTTTGTTTGATCTCCCAGAAGCAGAAGCTGAATCAGTTGCAGGCTATAATGTAG

mRNA sequence

ATGATCAACTCGTTGATTGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCTTTCTAGGAGCATTACAATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCACCTTGTCCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTACCAGAAACTAATCGAGCTTTGTTTGATCTCCCAGAAGCAGAAGCTGAATCAGTTGCAGGCTATAATGTAG

Coding sequence (CDS)

ATGATCAACTCGTTGATTGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCTTTCTAGGAGCATTACAATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCACCTTGTCCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTACCAGAAACTAATCGAGCTTTGTTTGATCTCCCAGAAGCAGAAGCTGAATCAGTTGCAGGCTATAATGTAG

Protein sequence

MINSLIVGNFHSSIFEICFLGALQSAAQMVPYEVSIGLILIVHLVPVIRVRLSWRKSRYGLVFPCSLYWLCSLFLVYQKLIELCLISQKQKLNQLQAIM
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0044464 cell part
cellular_component GO:0016020 membrane
molecular_function GO:0016491 oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019820.1CmaCh04G019820.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 85..99
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019820Cucurbita maxima (Rimu)cmacmaB018
CmaCh04G019820Cucurbita moschata (Rifu)cmacmoB679
CmaCh04G019820Watermelon (Charleston Gray)cmawcgB622
CmaCh04G019820Cucurbita pepo (Zucchini)cmacpeB721