CmaCh04G019800 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019800
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem II CP43 reaction center protein
LocationCma_Chr04 : 11593417 .. 11594947 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTCGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGTTGCCGTATGAGGTTGGTTTACAGCAGGTACACCCTTTGTAACTTAATGGTATACCTAACCATATGGATTGACAAGTTTCTATTTGTTTGGAAGGATGCAACTTCTTAACCGCCGCTGTTTCAACTCCTGCTAATAGTTTAGCACACTCTTTCTTTGTTGTTACTATGGGGCCTGAAGCACAAGGAGATAGATTTGACTCCTTGGTGTCCATTACCATTAGGTGGTCTGTGGACTTTTGTTTCTCTCCACGGTTCGGACTAATAAGTTTCATGGTACGTTTGAACTTGCTTGATCTGTTCAATTGCTTTGTTTGTTTCCGTATTCCTAATGATTGATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCCTAGGAATGAAATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGGTTGCGGGTGTATTGGGCGCTGCTTGGCTATGCGCTATTCATGGTGCTACCGTAGAAAATCCCTTATTTGAAGGAAGATGGTGATGATGCTTCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATTTTTAGGGTTGCTTTTTCCACTAAAGGTTGGTTACATTTCTTTCTGTTATTTGTACCAGTAGCTGCTTTATGGCCGAGTGCTCTTGGAGTAGTTGGTCTTGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGCAATCCGTGCAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACCTTCTATTCCCCGAGGAGGTTCTATACCCCGGGGAAAGGCTCTTTCTTTATTTAATGGAACTTTCTAGCTGGTGTCATGACCAAGAACTGGTTTGTTTCGCTTGGTGTGCCGGGAATGCCCGACTTATCCATTTATCCGATAAACTACTGGGGGCTCATCTAGCCCATGCCTGATTAATCGTATTCTAGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTGAGAAAGAAGCCCATGCATGAACAAGGATGAATTTGACTTCACTTCCCCACCTAGCTACTCTAACTCTACTCTAGGTTGGGGCGTAGGTCCTGGTGGAGAAGTTATAGACACCTTTTCGTACTTTGTGTCCGTCTGGAGTACTTCACTGAATTTCCTCCGTCTGCAGTATTGGGTTTTGGCGCTATGTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCCTTCTTCGGTTATGTGTGGAAAGATAGATAG

mRNA sequence

ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTCGTAGCTGCTTTATGGCCGAGTGCTCTTGGAGTAGTTGGTCTTGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGCAATCCGTGCAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTCCTGGTGGAGAAGTTATAGACACCTTTTCGTACTTTGTGTCCGTCTGGAGTACTTCACTGAATTTCCTCCGTCTGCAGTATTGGGTTTTGGCGCTATGTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCCTTCTTCGGTTATGTGTGGAAAGATAGATAG

Coding sequence (CDS)

ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTCGTAGCTGCTTTATGGCCGAGTGCTCTTGGAGTAGTTGGTCTTGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGCAATCCGTGCAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTCCTGGTGGAGAAGTTATAGACACCTTTTCGTACTTTGTGTCCGTCTGGAGTACTTCACTGAATTTCCTCCGTCTGCAGTATTGGGTTTTGGCGCTATGTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCCTTCTTCGGTTATGTGTGGAAAGATAGATAG

Protein sequence

MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVVAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYTLLYPESSLNRRSWWRSYRHLFVLCVRLEYFTEFPPSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR
Homology
[Close]
BLAST of CmaCh04G019800 vs. Swiss-Prot
Match: PSBC_BRADI (Photosystem II CP43 reaction center protein OS=Brachypodium distachyon GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. Swiss-Prot
Match: PSBC_AETCO (Photosystem II CP43 reaction center protein OS=Aethionema cordifolium GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. Swiss-Prot
Match: PSBC_AETGR (Photosystem II CP43 reaction center protein OS=Aethionema grandiflorum GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. Swiss-Prot
Match: PSBC_AGRST (Photosystem II CP43 reaction center protein OS=Agrostis stolonifera GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. Swiss-Prot
Match: PSBC_AMBTC (Photosystem II CP43 reaction center protein OS=Amborella trichopoda GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. TrEMBL
Match: I1H3A2_BRADI (Photosystem II D2 protein OS=Brachypodium distachyon PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.7e-23
Identity = 75/139 (53.96%), Postives = 83/139 (59.71%), Query Frame = 1 

Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRRSWW-- 92
           V  LW SA+GVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E     R+W   
Sbjct: 277 VTGLWMSAIGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEGI---RAWMAA 336

Query: 93  -----------RSYRHL-------FVLCVRLEYFTEFPPSA-------VLGFGAMYHALL 143
                      R + H+       FVL  R +  T F   A       + GFG +YHALL
Sbjct: 337 QISLMKILYSLRRFYHVETLFNGTFVLAGRDQETTGFAWWAGNARLINLSGFGGIYHALL 396

[Close]
BLAST of CmaCh04G019800 vs. TrEMBL
Match: K3Z2T5_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_020853mg PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.4e-14
Identity = 62/129 (48.06%), Postives = 71/129 (55.04%), Query Frame = 1 

Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRRSWW-- 92
           V  LW SA+GVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E     R+W   
Sbjct: 244 VTGLWMSAIGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEGI---RAWMAA 303

Query: 93  -----------RSYRHL-------FVLCVRLEYFTEFPPSA-------VLGFGAMYHALL 133
                      R + H+       FVL  R +  T F   A       + GFG +YHALL
Sbjct: 304 QISLMKILYSLRRFYHVETLFNGTFVLAGRDQETTGFAWWAGNARLINLSGFGGIYHALL 363

[Close]
BLAST of CmaCh04G019800 vs. TrEMBL
Match: G9IIW6_MILPI (Photosystem II CP43 reaction center protein OS=Millettia pinnata GN=psbC PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGLYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. TrEMBL
Match: H2BM40_SILVU (Photosystem II CP43 reaction center protein OS=Silene vulgaris GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. TrEMBL
Match: A9QBJ5_MUSAC (Photosystem II CP43 reaction center protein (Fragment) OS=Musa acuminata GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. TAIR10
Match: ATCG00280.1 (ATCG00280.1 photosystem II reaction center protein C)

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-13
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. TAIR10
Match: ATCG00270.1 (ATCG00270.1 photosystem II reaction center protein D)

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-12
Identity = 36/42 (85.71%), Postives = 36/42 (85.71%), Query Frame = 1 

Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT 75
           V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYT 317

[Close]
BLAST of CmaCh04G019800 vs. NCBI nr
Match: gi|944221278|gb|KQK85731.1| (hypothetical protein SETIT_020853mg [Setaria italica])

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 62/129 (48.06%), Postives = 71/129 (55.04%), Query Frame = 1 

Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRRSWW-- 92
           V  LW SA+GVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E     R+W   
Sbjct: 244 VTGLWMSAIGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEGI---RAWMAA 303

Query: 93  -----------RSYRHL-------FVLCVRLEYFTEFPPSA-------VLGFGAMYHALL 133
                      R + H+       FVL  R +  T F   A       + GFG +YHALL
Sbjct: 304 QISLMKILYSLRRFYHVETLFNGTFVLAGRDQETTGFAWWAGNARLINLSGFGGIYHALL 363

[Close]
BLAST of CmaCh04G019800 vs. NCBI nr
Match: gi|374249531|ref|YP_005088801.1| (photosystem II 44 kDa protein (chloroplast) [Millettia pinnata])

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGLYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. NCBI nr
Match: gi|984912405|gb|AMC31639.1| (photosystem II 44 kDa protein (chloroplast) [Vicia americana var. minor])

HSP 1 Score: 72.0 bits (175), Expect = 9.4e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. NCBI nr
Match: gi|408899827|gb|AFU94717.1| (PsbC, partial (chloroplast) [Passiflora ciliata])

HSP 1 Score: 72.0 bits (175), Expect = 9.4e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]
BLAST of CmaCh04G019800 vs. NCBI nr
Match: gi|255640779|gb|ACU20673.1| (unknown [Glycine max])

HSP 1 Score: 72.0 bits (175), Expect = 9.4e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 42  SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 74

The following BLAST results are available for this feature:
BLAST of CmaCh04G019800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBC_BRADI5.9e-1293.94Photosystem II CP43 reaction center protein OS=Brachypodium distachyon GN=psbC P... [more]
PSBC_AETCO5.9e-1293.94Photosystem II CP43 reaction center protein OS=Aethionema cordifolium GN=psbC PE... [more]
PSBC_AETGR5.9e-1293.94Photosystem II CP43 reaction center protein OS=Aethionema grandiflorum GN=psbC P... [more]
PSBC_AGRST5.9e-1293.94Photosystem II CP43 reaction center protein OS=Agrostis stolonifera GN=psbC PE=3... [more]
PSBC_AMBTC5.9e-1293.94Photosystem II CP43 reaction center protein OS=Amborella trichopoda GN=psbC PE=3... [more]
BLAST of CmaCh04G019800 vs. TrEMBL
Match NameE-valueIdentityDescription
I1H3A2_BRADI6.7e-2353.96Photosystem II D2 protein OS=Brachypodium distachyon PE=3 SV=1[more]
K3Z2T5_SETIT7.4e-1448.06Uncharacterized protein OS=Setaria italica GN=SETIT_020853mg PE=3 SV=1[more]
G9IIW6_MILPI5.0e-1093.94Photosystem II CP43 reaction center protein OS=Millettia pinnata GN=psbC PE=3 SV... [more]
H2BM40_SILVU6.5e-1093.94Photosystem II CP43 reaction center protein OS=Silene vulgaris GN=psbC PE=3 SV=1[more]
A9QBJ5_MUSAC6.5e-1093.94Photosystem II CP43 reaction center protein (Fragment) OS=Musa acuminata GN=psbC... [more]
BLAST of CmaCh04G019800 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00280.13.3e-1393.94ATCG00280.1 photosystem II reaction center protein C[more]
ATCG00270.12.8e-1285.71ATCG00270.1 photosystem II reaction center protein D[more]
BLAST of CmaCh04G019800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|944221278|gb|KQK85731.1|1.1e-1348.06hypothetical protein SETIT_020853mg [Setaria italica][more]
gi|374249531|ref|YP_005088801.1|7.2e-1093.94photosystem II 44 kDa protein (chloroplast) [Millettia pinnata][more]
gi|984912405|gb|AMC31639.1|9.4e-1093.94photosystem II 44 kDa protein (chloroplast) [Vicia americana var. minor][more]
gi|408899827|gb|AFU94717.1|9.4e-1093.94PsbC, partial (chloroplast) [Passiflora ciliata][more]
gi|255640779|gb|ACU20673.1|9.4e-1093.94unknown [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000484Photo_RC_L/M
IPR000932PS_antenna-like
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009772photosynthetic electron transport in photosystem II
GO:0009767photosynthetic electron transport chain
Vocabulary: Molecular Function
TermDefinition
GO:0045156electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0016168chlorophyll binding
Vocabulary: Cellular Component
TermDefinition
GO:0009521photosystem
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009507 chloroplast
cellular_component GO:0009521 photosystem
cellular_component GO:0016020 membrane
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019800.1CmaCh04G019800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MGENE3DG3DSA:1.20.85.10coord: 15..63
score: 4.
IPR000484Photosynthetic reaction centre, L/MunknownSSF81483Bacterial photosystem II reaction centre, L and M subunitscoord: 15..89
score: 1.6
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 110..142
score: 1.3
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 110..142
score: 1.1
NoneNo IPR availablePANTHERPTHR33180:SF4PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEINcoord: 110..142
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G019800CmoCh11G012230Cucurbita moschata (Rifu)cmacmoB679
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019800Cucurbita maxima (Rimu)cmacmaB018
CmaCh04G019800Watermelon (Charleston Gray)cmawcgB622
CmaCh04G019800Cucurbita pepo (Zucchini)cmacpeB721