CmaCh04G019790 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019790
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH-ubiquinone oxidoreductase chain 1
LocationCma_Chr04 : 11545494 .. 11547870 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAACTCGTTGATGGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCTCCTTGTGAGCGCGTTTGGATCCGCGAAGGCAATCGCTCGGATGTTCTCCTAACCCAACCTGGGAACGGACTGGAGGGAATCGCAGCATGGGGAATGTCCGCATCTCGTCGCAAGGCTCATTTTAAATTATTGGTCGGGGGTTTATCTGATCAAGGGTCGGGGCACAAGGGTCCTGGTACTATCCAGGTGCAAAGAACCATGGGGGTGACTGCAATGAGCAGAAATCTCACTTACCGGCCTAAACGACGAGCAAACACTCGAACGTGAGAGCAAGGGATCACCCAAGGAATGGACGAGCTGCAAGGAGGGAGGCAAGAACCATGCTTTCAAAGACCTAACCCAACCCAACGGTCCCGAATCTTATCTGAATTGCTAGAATAACTAACTAAGCCATGCCTACATATAGGCTCATTCTCCAAACGGCGCGGAGCCAAGCCTTTAGGTTGTTTAAGTAGATTGGGTGACAAATCGGCCATAGCAGTACTCCGGGATATAAATCAGGGCAACAAATGTCGAGCATACAACGATGCCGCCCATTTTCATTTCGTGTAAGTGCCCGCCAGAGGAAAGAAAGGGCTGTGTAGGTGATGGTGCGTTCCGCTTCTTATCTAGAGAGGGAGTAAGGAGTAAGTAGCTCAACTAATAGGGAGAGAGAGGGGCGAAGCTGTGAGACGAGAAGAGGAGCGCTGAAATCGTTCCTATTGGATTGGGTCGTGCGTGGCAGCTGGTAGAGATGAATGATGAATAAAGGCGGGCTGCTTCAACGGGACCTATTCTCTTAATAGGCGGCAAAGTAGAATAGGAAAGGGGCCGAGTGATGAGTGCCTTTTTAGCCTTTTTTTCTAAAGACTTTCATGTGAAGCTAACATGGCTCGCTACATAAAAGTATAGCCAAAGAAAGATGAGATGGGACAGACGGTCAGAGGCCGCAGCGGGACTACCATAGGAAAGCCCGCCCCCTCCCGCTAACATAGAAAGTGATTCCCATAACTAGTCTCTATGTGAATCTCTTCCCAACCAGCCGAATCGGGCCACCACTTAGGGTGGGAATGGCTCAGCCCACATGCATCATTTGATGAAAGCACTCCAGTCCAGCCGCCTCCTCGAAGTGGCTTGTCAACCACGCTTTCCCTCCCTCAAAATAATACTCCTCACCAAAAGCCCTTGGGGCAACACAGCAATGAGTAGTTCGCTCCAGGACTCCACCCCCTCGAGAGCAAGATGCCGGCCGAGATGGAGCTGGAAGCCAACCTAGACTTTCTGGGGGCTTGTCCCAACATCTAAATCAAATTGTTGGCAGGCTAGAAAAGGAACCAGCCCAGCCTCGGAAATCAAGCTTTGCGTGGTATGCCCTGCCTATTCACTCGGACAATGCTATGAACACGAAAGTGTGCAGTTCCGCCCCCTTCTCCCATGCTGAGTCACAGGCAGCGCCTCGAAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGACGGGGACCCCAGTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCACAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCTGTTTGATCTCTCAGAAGCGAAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGAATTCATTCTAACTGAAACAAGGGGTGGGTCTTTACCAACTTTCAAATATTCGCAATTTGAGGGAAGCCAAAAAAACCTCTCGAACCAAGGGATTGAGCAGCGCGAAAGCCACGATCAAACTCTATCTAATAAGGGCGTATTAGAGTGGCGTTAGCGCCCCCTTCCCCTTACCCCTAAACAAAAAGGTTTTTCAGAAAGTTGTCTACGCCTTTTGAAAACCTGACTATTAATAATAATAAAGGGCAAAATGCGCTCAAACAACCAACCTATCTGACTAATAAGAAGAAAGAAAGGGCCCTATCTAAGCTCTCTCGTTGTAAAGCTACAGCTCAAAAGTCGGCCTTACCTTTTATGTTTGTTATTAGTAAAGCCTAAAGCCCTTGACTAATAGAAAGGGATTTTCTTGCTTGTTTAGTAAAATCACGCTTTTCATTTTGATAGGAGTAGATGCTTGCAGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTAA

mRNA sequence

ATGATCAACTCGTTGATGGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCTCCTTTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCACAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCTGTTTGATCTCTCAGAAGCGAAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGAATTCATTCTAACTGAAACAAGGGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTAA

Coding sequence (CDS)

ATGATCAACTCGTTGATGGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCTCCTTTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCACAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCTGTTTGATCTCTCAGAAGCGAAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGAATTCATTCTAACTGAAACAAGGGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTAA

Protein sequence

MINSLMVGNFHSSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREFILTETRGAGHSSFFIRN
Homology
[Close]
BLAST of CmaCh04G019790 vs. Swiss-Prot
Match: NU1M_CITLA (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-46
Identity = 102/122 (83.61%), Postives = 106/122 (86.89%), Query Frame = 1 

Query: 6   MVGNFHSSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQ 65
           ++G F     +  FLGALRSAAQMVPYEVSIGLILIV L    ICVGPRNSSEIVMAQKQ
Sbjct: 97  LLGTFTPLYSKYAFLGALRSAAQMVPYEVSIGLILIVRL----ICVGPRNSSEIVMAQKQ 156

Query: 66  IWSGIPLFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANV 125
           IWSGIPLFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYA DAILNSPLLAEANV
Sbjct: 157 IWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYAWDAILNSPLLAEANV 214

Query: 126 PG 128
           PG
Sbjct: 217 PG 214

[Close]
BLAST of CmaCh04G019790 vs. Swiss-Prot
Match: NU1M_PETHY (NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.3e-37
Identity = 85/99 (85.86%), Postives = 88/99 (88.89%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMVPYEVSIGLILI    TVLICVG RNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVPYEVSIGLILI----TVLICVGSRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEY+
Sbjct: 187 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

[Close]
BLAST of CmaCh04G019790 vs. Swiss-Prot
Match: NU1M_OENBE (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana GN=ND1 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.9e-32
Identity = 79/99 (79.80%), Postives = 82/99 (82.83%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVG  N SEIVMAQKQIW GIP
Sbjct: 133 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGSCNLSEIVMAQKQIWFGIP 192

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMFFIS LAETNRA FDL EA+AE VAGYNVEY+
Sbjct: 193 LFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 227

[Close]
BLAST of CmaCh04G019790 vs. Swiss-Prot
Match: NU1M_ARATH (NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana GN=ND1 PE=2 SV=4)

HSP 1 Score: 138.3 bits (347), Expect = 6.9e-32
Identity = 79/99 (79.80%), Postives = 82/99 (82.83%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVG  N SEIVMAQKQIW GIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGSCNLSEIVMAQKQIWFGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMFFIS LAETNRA FDL EA+AE VAGYNVEY+
Sbjct: 187 LFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221

[Close]
BLAST of CmaCh04G019790 vs. Swiss-Prot
Match: NU1M_WHEAT (NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum GN=ND1 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.9e-32
Identity = 79/99 (79.80%), Postives = 82/99 (82.83%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVG  N SEIVMAQKQIW GIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGSCNLSEIVMAQKQIWFGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMFFIS LAETNRA FDL EA+AE VAGYNVEY+
Sbjct: 187 LFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221

[Close]
BLAST of CmaCh04G019790 vs. TrEMBL
Match: V9PBJ9_VACMA (NADH-ubiquinone oxidoreductase chain 1 OS=Vaccinium macrocarpon GN=nad1 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 108/127 (85.04%), Postives = 110/127 (86.61%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILIV L TVLICVG  N SEIVMAQKQIW GIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILIVRLVTVLICVGSCNLSEIVMAQKQIWFGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFIS LAETNRA FDL EA+AESVAGYNVEYARDAILNS LLAEANVPGSR  
Sbjct: 187 LFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLLAEANVPGSRGL 246

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 247 ILTETRG 253

[Close]
BLAST of CmaCh04G019790 vs. TrEMBL
Match: V9P5P4_SALMI (NADH-ubiquinone oxidoreductase chain 1 OS=Salvia miltiorrhiza GN=nad1 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.7e-43
Identity = 101/116 (87.07%), Postives = 103/116 (88.79%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +   LGALRSAAQMVPYEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYASLGALRSAAQMVPYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPG 128
           LFPVLVMFFIS LAETNRA FDL EA+AESVAGYNVEYARDAILNS LLAEANVPG
Sbjct: 187 LFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLLAEANVPG 238

[Close]
BLAST of CmaCh04G019790 vs. TrEMBL
Match: G9FCL4_9LAMI (NADH-ubiquinone oxidoreductase chain 1 OS=Dorcoceras hygrometricum GN=nad1 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.9e-43
Identity = 101/116 (87.07%), Postives = 103/116 (88.79%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPG 128
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAILNS LLAEANV G
Sbjct: 187 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLLAEANVLG 238

[Close]
BLAST of CmaCh04G019790 vs. TrEMBL
Match: R4ITZ7_VICFA (NADH-ubiquinone oxidoreductase chain 1 OS=Vicia faba PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.7e-41
Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 1 

Query: 45  YTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRALFDLSEAKAESVAG 104
           YTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRA FDL EA+AESVAG
Sbjct: 30  YTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAG 89

Query: 105 YNVEYARDAILNSPLLAEANVPGSREFILTETRG 139
           YNVEYARDAILNSPLLAEANVPGSR  ILTETRG
Sbjct: 90  YNVEYARDAILNSPLLAEANVPGSRGLILTETRG 123

[Close]
BLAST of CmaCh04G019790 vs. TrEMBL
Match: A0A072THI4_MEDTR (NADH-quinone oxidoreductase protein OS=Medicago truncatula GN=MTR_0082s0280 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.7e-41
Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 1 

Query: 45  YTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRALFDLSEAKAESVAG 104
           YTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRA FDL EA+AESVAG
Sbjct: 30  YTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAG 89

Query: 105 YNVEYARDAILNSPLLAEANVPGSREFILTETRG 139
           YNVEYARDAILNSPLLAEANVPGSR  ILTETRG
Sbjct: 90  YNVEYARDAILNSPLLAEANVPGSRGLILTETRG 123

[Close]
BLAST of CmaCh04G019790 vs. TAIR10
Match: ATMG01120.1 (ATMG01120.1 NADH dehydrogenase 1B)

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-37
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMF ISRLAETNRA FDL EA+AESVAGYNVEY+
Sbjct: 187 LFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

[Close]
BLAST of CmaCh04G019790 vs. TAIR10
Match: ATMG00516.1 (ATMG00516.1 NADH dehydrogenase 1C)

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-37
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMF ISRLAETNRA FDL EA+AESVAGYNVEY+
Sbjct: 187 LFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

[Close]
BLAST of CmaCh04G019790 vs. TAIR10
Match: ATMG01275.1 (ATMG01275.1 NADH dehydrogenase 1A)

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-37
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMF ISRLAETNRA FDL EA+AESVAGYNVEY+
Sbjct: 187 LFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

[Close]
BLAST of CmaCh04G019790 vs. TAIR10
Match: ATCG01100.1 (ATCG01100.1 NADH dehydrogenase family protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 1 

Query: 2   INSLMVGNFHSSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVM 61
           I  LM G  + S  +  FLG LR+AAQ + YE+ + L ++    ++ +     ++ +IV 
Sbjct: 143 IGLLMSG--YGSNNKYSFLGGLRAAAQSISYEIPLTLCVL----SISLLSNSLSTVDIVE 202

Query: 62  AQKQ--IWS-GIPLFPV-LVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           AQ +   W   +   P+  ++F IS LAE  R  FDL EA+ E +AGY  EY+
Sbjct: 203 AQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQTEYS 249

[Close]
BLAST of CmaCh04G019790 vs. NCBI nr
Match: gi|576303586|ref|YP_008999604.1| (NADH dehydrogenase subunit 1 (mitochondrion) [Vaccinium macrocarpon])

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-46
Identity = 108/127 (85.04%), Postives = 110/127 (86.61%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILIV L TVLICVG  N SEIVMAQKQIW GIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILIVRLVTVLICVGSCNLSEIVMAQKQIWFGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFIS LAETNRA FDL EA+AESVAGYNVEYARDAILNS LLAEANVPGSR  
Sbjct: 187 LFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLLAEANVPGSRGL 246

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 247 ILTETRG 253

[Close]
BLAST of CmaCh04G019790 vs. NCBI nr
Match: gi|12875|emb|CAA27743.1| (URF-1 [Citrullus lanatus])

HSP 1 Score: 189.9 bits (481), Expect = 3.2e-45
Identity = 103/122 (84.43%), Postives = 107/122 (87.70%), Query Frame = 1 

Query: 6   MVGNFHSSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQ 65
           ++G F     +  FLGALRSAAQMVPYEVSIGLILIV L    ICVGPRNSSEIVMAQKQ
Sbjct: 97  LLGTFTPLYSKYAFLGALRSAAQMVPYEVSIGLILIVRL----ICVGPRNSSEIVMAQKQ 156

Query: 66  IWSGIPLFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANV 125
           IWSGIPLFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAILNSPLLAEANV
Sbjct: 157 IWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANV 214

Query: 126 PG 128
           PG
Sbjct: 217 PG 214

[Close]
BLAST of CmaCh04G019790 vs. NCBI nr
Match: gi|128636|sp|P08834.1|NU1M_CITLA (RecName: Full=NADH-ubiquinone oxidoreductase chain 1; AltName: Full=NADH dehydrogenase subunit 1)

HSP 1 Score: 186.8 bits (473), Expect = 2.7e-44
Identity = 102/122 (83.61%), Postives = 106/122 (86.89%), Query Frame = 1 

Query: 6   MVGNFHSSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQ 65
           ++G F     +  FLGALRSAAQMVPYEVSIGLILIV L    ICVGPRNSSEIVMAQKQ
Sbjct: 97  LLGTFTPLYSKYAFLGALRSAAQMVPYEVSIGLILIVRL----ICVGPRNSSEIVMAQKQ 156

Query: 66  IWSGIPLFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANV 125
           IWSGIPLFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYA DAILNSPLLAEANV
Sbjct: 157 IWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYAWDAILNSPLLAEANV 214

Query: 126 PG 128
           PG
Sbjct: 217 PG 214

[Close]
BLAST of CmaCh04G019790 vs. NCBI nr
Match: gi|570700005|ref|YP_008992266.1| (NADH dehydrogenase subunit 1 (mitochondrion) [Salvia miltiorrhiza])

HSP 1 Score: 182.2 bits (461), Expect = 6.7e-43
Identity = 101/116 (87.07%), Postives = 103/116 (88.79%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +   LGALRSAAQMVPYEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYASLGALRSAAQMVPYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPG 128
           LFPVLVMFFIS LAETNRA FDL EA+AESVAGYNVEYARDAILNS LLAEANVPG
Sbjct: 187 LFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLLAEANVPG 238

[Close]
BLAST of CmaCh04G019790 vs. NCBI nr
Match: gi|377806970|ref|YP_005090403.1| (nad1 gene product (mitochondrion) [Dorcoceras hygrometricum])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 101/116 (87.07%), Postives = 103/116 (88.79%), Query Frame = 1 

Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPG 128
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAILNS LLAEANV G
Sbjct: 187 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLLAEANVLG 238

The following BLAST results are available for this feature:
BLAST of CmaCh04G019790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NU1M_CITLA1.7e-4683.61NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1[more]
NU1M_PETHY9.3e-3785.86NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1[more]
NU1M_OENBE6.9e-3279.80NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana GN=ND1 PE=2 SV=1[more]
NU1M_ARATH6.9e-3279.80NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana GN=ND1 PE=2 SV=4[more]
NU1M_WHEAT6.9e-3279.80NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum GN=ND1 PE=2 SV=1[more]
BLAST of CmaCh04G019790 vs. TrEMBL
Match NameE-valueIdentityDescription
V9PBJ9_VACMA1.2e-4685.04NADH-ubiquinone oxidoreductase chain 1 OS=Vaccinium macrocarpon GN=nad1 PE=3 SV=... [more]
V9P5P4_SALMI4.7e-4387.07NADH-ubiquinone oxidoreductase chain 1 OS=Salvia miltiorrhiza GN=nad1 PE=3 SV=1[more]
G9FCL4_9LAMI7.9e-4387.07NADH-ubiquinone oxidoreductase chain 1 OS=Dorcoceras hygrometricum GN=nad1 PE=3 ... [more]
R4ITZ7_VICFA9.7e-4194.68NADH-ubiquinone oxidoreductase chain 1 OS=Vicia faba PE=3 SV=1[more]
A0A072THI4_MEDTR9.7e-4194.68NADH-quinone oxidoreductase protein OS=Medicago truncatula GN=MTR_0082s0280 PE=3... [more]
BLAST of CmaCh04G019790 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG01120.12.6e-3784.85ATMG01120.1 NADH dehydrogenase 1B[more]
ATMG00516.12.6e-3784.85ATMG00516.1 NADH dehydrogenase 1C[more]
ATMG01275.12.6e-3784.85ATMG01275.1 NADH dehydrogenase 1A[more]
ATCG01100.12.8e-0735.40ATCG01100.1 NADH dehydrogenase family protein[more]
BLAST of CmaCh04G019790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|576303586|ref|YP_008999604.1|1.7e-4685.04NADH dehydrogenase subunit 1 (mitochondrion) [Vaccinium macrocarpon][more]
gi|12875|emb|CAA27743.1|3.2e-4584.43URF-1 [Citrullus lanatus][more]
gi|128636|sp|P08834.1|NU1M_CITLA2.7e-4483.61RecName: Full=NADH-ubiquinone oxidoreductase chain 1; AltName: Full=NADH dehydro... [more]
gi|570700005|ref|YP_008992266.1|6.7e-4387.07NADH dehydrogenase subunit 1 (mitochondrion) [Salvia miltiorrhiza][more]
gi|377806970|ref|YP_005090403.1|1.1e-4287.07nad1 gene product (mitochondrion) [Dorcoceras hygrometricum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001694NADH_UbQ_OxRdtase_su1/FPO
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0070469 respiratory chain
cellular_component GO:0016020 membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019790.1CmaCh04G019790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPANTHERPTHR11432NADH DEHYDROGENASE SUBUNIT 1coord: 19..110
score: 2.0
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPFAMPF00146NADHdhcoord: 19..110
score: 6.4
NoneNo IPR availablePANTHERPTHR11432:SF3NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1coord: 19..110
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019790Cucurbita maxima (Rimu)cmacmaB018
CmaCh04G019790Cucurbita moschata (Rifu)cmacmoB679
CmaCh04G019790Watermelon (Charleston Gray)cmawcgB622
CmaCh04G019790Cucurbita pepo (Zucchini)cmacpeB721