CmaCh04G019770 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCma_Chr04 : 11511144 .. 11515830 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGCAGATTTGAGATTCAAAATCAAGCTCGACAGAGGATTCCACTACCTACGCCCTCAACCGATACATATGAGGGCGACAATTCTGATCACCACGATGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAACCGATCTAGAGGAGTACCTTCAATGGTAGAAAATGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTATTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTAGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGCAAATCTGTGGAGAATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTGATTTACAGCCTTATTCTAATATTAAGGAGTTGTTGCACATTGCAATTAAGATTGAGAGGCAAATCCAACGAAGGTCTCAATGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAGGGATAGTAAGAACATTGATTATAAGCATAAAAATCAAGAGATTAATGAGAAGCCTCAAGCTAAATTTGAGAAAGGGGAGAGTTCTAAAACAAGGAAAGAAAAAGTAGAAAAGTCTAATGTTCGAAATAGAGATTTAAAGTGTTTGAGATGTCAAGGGGTAGGACACTATTAGTAGAGATTGCTCAAATGCAAGAATTATGACCATCAAGGAGGGAGAAATTGTTACGGATGACGAGGCACATGGCGACATAAATGAGGAAACTGATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTACACATATATCTTTGGTTACTCGACAAGCTCTAAACACCCACATTAAGGAGGACGGCCTAGACCAAAGGGAGAACTTGTTTCAAACTCGGTGTCTTGTTCAATCTGTACCTTGTAGTGTTGTAATTGATAACGGTAGTTGCACCAATGTTATGAGTTTCATTCTGGTCAAAAGACTTAATTTAAAGACACAACCACATCCAAGACCCTACAAGCTTCAATGGTTGAATGATTGTGGGGAAGTACGGGTAACTCAACAAACTCTTGTTTCTTTTACTATTGAAAAATATGTTGATGATGTTTTATGTGATGTTGTATCCATGCATGTTGGAGATTTACTACTAGGGAGGCCTTGGCAATTTGATCGTCGGGTAATGTATGATGGGTATGCAAATCGATACTCTTTTACTCACAACGGTAGAAAAACTACTCTTATTCCATTGTCTCCAAAAGATGTATTTATTGATCATTGCAAACTTGAAAAGAAAAGGCAAGAGGCTGATACAAAAGCAAAGATTGAAAAAGAATCAAGTGAAAAAAAGAACTTGAGGGAAAAGCAAGAGAGTAACACTCAGCCTAGAGAAAAAAAAAAAGAGAGAAAAGCCAAATCAGTAAGCTTGTATGTTAGATCAAGTGAGGCTAGGAATGTTTTGCTCTCTAATCAGACTATTCTTGTACTTATGTGCAAGGGATCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTTGTGCTTTTGAAAGAGTTTGAAGATTTATTTTTCGAGGAGACACATAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGTGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGGTATGTACGTGAAAGTTTGAGTCCTTGTTCTGTTCCAGATATTCTTGTACCTAAGAAAGATGGTTCTTGGCGTATGTGTGTTGATTGTAGGGCTATAAACAAGATAACTATAATGTATAGGCATCCAATTCCCAGATTAGATGATAAGCTTGAAGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAGTTCGCATGCATACTGGGGATGAGTAGAAAACAGCTTTTAAAACCAAGCATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAATTAATGCACCTAGTACATTCATGAGACTAATGAACCATGTCTTACGAGAATACTTAGGTAAGTTTGTGGTTATTTATTTTGATGACATCATTGTTTACTCTAAATCTTTAGATGATCATATTACCCATGTACGCAATGTTTTGACTACTTTAAGAAACGAATGTTTGTACGTAAATCTAAAGAAATGTAGCTTTTGCATGGAAAAAGTTAACTTTCTTGGGTTTGTAGTTTCATCTAATGGTGTTGAGGTTGACGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACACCTAAAAATGTAAGTGAGGTAAGAAGTTTTCATGGTCTTGCAAGTTTCTACCGTAGGTTCATTAAGAATTTTAGTACAATTGCTTCACCCTTGAATGAACTTGTTAAGAAAAATGTATCCTTTATATGGGAAAAAGATCAAGAAGTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTTTGCTCCCTTGCTTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTAATGCAAAATCAAAGATCTTTAATGTTTTTTAGTGAGAAGTTGACTGGTGCATCTTTGAGGTATCCAACTTATGACAAAGCGCTTTATGCTTTGGTTCGTGCATTGCAACCCTGACAACATTATCTTGGGCCTAAGAAGTTCATTATTCATACGGATCATGAAAGTTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACGACATGCTAAGTGGTTAGAATTTATTGAAACATTCCCTTATGTCATAAAATATAAACAAGGTAAGGAGAACATGGTTGCAGATGCATTATCACGAAGGTATGTCCTCCTCAATACTTTGAATGCTAGGTTGTTGGGTTATGAACACATAAAGGATTTGTATCAACATGACATGTTCTTTGCTCCTTTTGTTGAATCTTGTGAAAAAGGACTCATTGTGGATAATTACTTGTTGTTAGATGGATTTTTGTTCCGAAAAGGCAAACTTTGCATACCATCTTATTCCATCCGTGAGCTACTTGTGAGGGAAGCTCATGGAGGTGGTTTAATGGCACACCGTGGAGTTTCTAAAACTTATGATATGCTCTCTGAACATTTTTTTTTGGCCTAAAATGAGACATGATGTTCATAAAGTTTGTGCTCGTTGCATAGCATGTAAACAAGCTAAGTTTAGGCTTCAACCACATGGTTTATACTCCCCATTACCGGTTTCTAATGGTCCTTGGATTGATATATCAATGGATTTTGTTTTAGGTTTACCTAGGACTAGGAAAGGTTATGATAGCATCTTTGTTGTGGTTGATCGATTTAGTAAAATGGCTCATTTTATTCCTTGTTACAAAACTGATGATGCAAAAAATATTGCAGACTTGTTATTTAGGGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATCGTGATGTAAAATTTTTAAGCCACTTTTGGTGTGTTTTATGGGGTAAGTTAGGAACTAAGCTAGTATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGCTGTTAACAGAACCATGACTGCTATGCTTAGGACTATTATTGATAAGAATCTTAAGACTTGGGAGGATTGTTTGCCCTTTATATTATTTGCATATAATAGGGTTGTTCATAGCACTACAAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCCATTGACTTGTTACCCATACCGTCAAAAGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAACTGCACAAGCAAGTGAAAGAACAAATTGAGAAATAAAATTCCAAGGTTGCCACCCGAATTAATAAAGGACGTAAAATTGTCATCTTCAAGCCCGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTCAAAGAAAATCTAAGCTTTTACCACGAGGAGATGGACCTTTTCAAGTTCTTGAGCGTATCAACGATAATGCTTATAAAATTGATTTACCAGGTAAGTACGGTGTTAGTACAACTTTTAATGTTGTTGATTTGAGTCCTTTTGATGTAGGTGATGGCTTTGATTCGAGGACGAATCTTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAGGAATTTCCATACCTCAAGGTCTAATTACAAGAACGAGAGCTAAGAAGTTACAACAAACCTTATACAGTTCTATTCAAGCTATGGTGAGCTCATCAAAGGAAATTCTAGAAGACGCTGGAGACCTTCCTTATATGTTGTGCAAAGTTGAGCCTCAAGAAAGAGATGAATTTAATGCATTTTAA

mRNA sequence

ATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGCAGATTTGAGATTCAAAATCAAGCTCGACAGAGGATTCCACTACCTACGCCCTCAACCGATACATATGAGGGCGACAATTCTGATCACCACGATGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTAGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGCAAATCTGTGGAGAATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTGATTTACAGCCTTATTCTAATATTAAGGAGTTGTTGCACATTGCAATTAAGATTGAGAGGCAAATCCAACGAAGGTCTCAATGACTATTCTTGTACTTATGTGCAAGGGATCTTGTTACTTTACTAACATGCTTAACCCTTCTTTGCCTAGTGATTTTTGTGCTTTTGAAAGAGTTTGAAGATTTATTTTTCGAGGAGACACATAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGTGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGATACAAAGGCAAGTGATGGCTTTGATTCGAGGACGAATCTTTCTCAAGAGGGGGAGAATGATATGAACCACGACCAAGGAATTTCCATACCTCAAGGTCTAATTACAAGAACGAGAGCTAAGAAGTTACAACAAACCTTATACAGTTCTATTCAAGCTATGGTGAGCTCATCAAAGGAAATTCTAGAAGACGCTGGAGACCTTCCTTATATGTTGTGCAAAGTTGAGCCTCAAGAAAGAGATGAATTTAATGCATTTTAA

Coding sequence (CDS)

ATGGAAAGACTAATTCGAGGAATAGAAGAGTTGACTGATCGAATAGGCAGATTTGAGATTCAAAATCAAGCTCGACAGAGGATTCCACTACCTACGCCCTCAACCGATACATATGAGGGCGACAATTCTGATCACCACGATGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTAGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGCAAATCTGTGGAGAATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTGATTTACAGCCTTATTCTAATATTAAGGAGTTGTTGCACATTGCAATTAAGATTGAGAGGCAAATCCAACGAAGGTCTCAATGA

Protein sequence

MERLIRGIEELTDRIGRFEIQNQARQRIPLPTPSTDTYEGDNSDHHDDNPHVVGHGLMRGRDHGRRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ
Homology
[Close]
BLAST of CmaCh04G019770 vs. TrEMBL
Match: E7BQD6_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.1e-26
Identity = 62/112 (55.36%), Postives = 82/112 (73.21%), Query Frame = 1 

Query: 66  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRL 125
           RRR  E PID+W E K  MR+RFVP Y+HR++  KLQ L QG KSVE Y+KEM+ L  R 
Sbjct: 132 RRRYAERPIDTWEEMKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVLKIRA 191

Query: 126 ELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ 178
            ++ED EA MARFL+GLN +I+D  +L  Y  + EL+H AIK+E+Q++R+SQ
Sbjct: 192 NVEEDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQ 243

[Close]
BLAST of CmaCh04G019770 vs. TrEMBL
Match: A5AMK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.1e-26
Identity = 57/110 (51.82%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 66  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRL 125
           +RRN E PI++W E K +MR+RFVP +++RD+ QKLQ+L QG +SV++Y+KEM+  M R 
Sbjct: 253 KRRNYERPIETWEEMKATMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRA 312

Query: 126 ELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRR 176
            ++E+ EA MARFLNGLN +IA+  +LQ Y  +++++H+AIK+ERQ++R+
Sbjct: 313 NVEENREATMARFLNGLNRDIANVVELQHYVELEDMVHMAIKVERQLKRK 362

[Close]
BLAST of CmaCh04G019770 vs. TrEMBL
Match: E7BQD7_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-25
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 1 

Query: 66  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRL 125
           RRR  E PID+W E K  MR+RFVP Y+HR++  KL+ L QG KSVE Y+KEM+ L  R 
Sbjct: 132 RRRYAERPIDTWEEMKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVLKIRA 191

Query: 126 ELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRRSQ 178
            ++ED EA MARFL+GLN +I+D  +L  Y  + EL+H AIK+E+Q++R+SQ
Sbjct: 192 NVEEDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQ 243

[Close]
BLAST of CmaCh04G019770 vs. TrEMBL
Match: A5BZH4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036847 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-25
Identity = 57/110 (51.82%), Postives = 86/110 (78.18%), Query Frame = 1 

Query: 66  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRL 125
           RRRN E PI++W E K +MR+RFVP +++ D+ QKLQ+L QG +SV++Y+KEM+  M   
Sbjct: 194 RRRNYERPIETWEEMKATMRRRFVPSHYYSDLYQKLQSLTQGYRSVDDYHKEMEIAMIPT 253

Query: 126 ELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRR 176
            ++ED EA MARFLNGLN +IA+  +LQ Y  +++++H+AIK+ERQ++R+
Sbjct: 254 NVEEDREATMARFLNGLNRDIANVVELQHYVELEDMVHMAIKVERQLKRK 303

[Close]
BLAST of CmaCh04G019770 vs. TrEMBL
Match: A5AZG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.8e-25
Identity = 56/110 (50.91%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 66  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRL 125
           RRRN E PI++W E K +MR+ FVP +++RD+ QKLQ+L QG +SV++Y+KEM+  M R 
Sbjct: 124 RRRNYERPIETWEEMKATMRRWFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRA 183

Query: 126 ELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRR 176
            ++ED EA MARFLNGLN +IA+  +LQ Y ++++++H+AIK+E++++R+
Sbjct: 184 NVEEDREATMARFLNGLNWDIANVVELQHYVDLEDMVHMAIKVEQRLKRK 233

[Close]
BLAST of CmaCh04G019770 vs. NCBI nr
Match: gi|823251220|ref|XP_012458219.1| (PREDICTED: uncharacterized protein LOC105779014 [Gossypium raimondii])

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 1 

Query: 66  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRL 125
           RRRN E PI +W E K  MR+RF+P Y+HR++ QKLQ L QG KSVE+YYKEM+  M R 
Sbjct: 143 RRRNGERPITTWTEMKAVMRRRFIPSYYHRELYQKLQNLTQGTKSVEDYYKEMEIAMIRA 202

Query: 126 ELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRR 176
           ++ ED EA MARFL GLN EIA+  +LQ Y  I +++HIAIK+E+QI+++
Sbjct: 203 DVQEDREATMARFLAGLNREIANIVELQHYVEIVDMVHIAIKVEKQIKKK 252

[Close]
BLAST of CmaCh04G019770 vs. NCBI nr
Match: gi|823166069|ref|XP_012482973.1| (PREDICTED: uncharacterized protein LOC105797563 [Gossypium raimondii])

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-26
Identity = 59/110 (53.64%), Postives = 86/110 (78.18%), Query Frame = 1 

Query: 66  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRL 125
           RRRN E P+ +WVE K  MRKRF+P Y+HR++ QKLQ+L QG++SVE+YYKEM+  M R 
Sbjct: 191 RRRNGERPVSTWVEMKAIMRKRFIPAYYHRELYQKLQSLTQGQRSVEDYYKEMEVAMIRA 250

Query: 126 ELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRR 176
           +++ED EA MARFL GLN +IA+  +L  Y  + +++H+AIK+E+Q++R+
Sbjct: 251 DVEEDREATMARFLAGLNRDIANIVELHHYVEVIDMVHMAIKVEKQLKRK 300

[Close]
BLAST of CmaCh04G019770 vs. NCBI nr
Match: gi|823138056|ref|XP_012468865.1| (PREDICTED: uncharacterized protein LOC105786943 [Gossypium raimondii])

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-26
Identity = 59/110 (53.64%), Postives = 85/110 (77.27%), Query Frame = 1 

Query: 66  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRL 125
           RRRN E P+ +W E K  MRKRF+P Y+HR++ QKLQ+L QG++SVE+YYKEM+  M R 
Sbjct: 59  RRRNGERPVSTWAEMKAIMRKRFIPAYYHRELYQKLQSLTQGQRSVEDYYKEMEVAMIRA 118

Query: 126 ELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRR 176
           +++ED EA MARFL GLN EIA+  +L  Y  + +++H+AIK+E+Q++R+
Sbjct: 119 DMEEDREATMARFLAGLNREIANIVELHHYVEVIDMVHMAIKVEKQLKRK 168

[Close]
BLAST of CmaCh04G019770 vs. NCBI nr
Match: gi|823166071|ref|XP_012482974.1| (PREDICTED: uncharacterized protein LOC105797566 [Gossypium raimondii])

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-26
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 1 

Query: 66  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRL 125
           RRRN E  I+SW E K  MR+RFVP ++HRD+ QKLQ+L QG KSVE+YYKEM+ +M R 
Sbjct: 161 RRRNGERAINSWAEMKAVMRRRFVPAHYHRDLFQKLQSLTQGSKSVEDYYKEMEIVMIRA 220

Query: 126 ELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRR 176
            ++ED EA MARFL GLN EIA+  +LQ Y  + +++H+AIKIERQ++++
Sbjct: 221 NIEEDREATMARFLAGLNREIANIVELQHYVELVDMVHMAIKIERQLKKK 270

[Close]
BLAST of CmaCh04G019770 vs. NCBI nr
Match: gi|823232051|ref|XP_012448731.1| (PREDICTED: uncharacterized protein LOC105771899 [Gossypium raimondii])

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-26
Identity = 59/110 (53.64%), Postives = 85/110 (77.27%), Query Frame = 1 

Query: 66  RRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVENYYKEMDTLMDRL 125
           RRRN E P+ +W E K  MRKRF+P Y+HR++ QKLQ+L QG++SVE+YYKEM+  M R 
Sbjct: 59  RRRNGERPVSTWAEIKVIMRKRFIPAYYHRELYQKLQSLTQGQRSVEDYYKEMEVAMIRA 118

Query: 126 ELDEDMEALMARFLNGLNTEIADKTDLQPYSNIKELLHIAIKIERQIQRR 176
           +++ED EA MARFL GLN EIA+  +L  Y  + +++H+AIK+E+Q++R+
Sbjct: 119 DMEEDREATMARFLAGLNREIANIVELHHYVEVIDMVHMAIKVEKQLKRK 168

The following BLAST results are available for this feature:
BLAST of CmaCh04G019770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G019770 vs. TrEMBL
Match NameE-valueIdentityDescription
E7BQD6_PEA8.1e-2655.36Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
A5AMK2_VITVI8.1e-2651.82Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1[more]
E7BQD7_PEA2.4e-2554.46Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
A5BZH4_VITVI3.1e-2551.82Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036847 PE=4 SV=1[more]
A5AZG1_VITVI6.8e-2550.91Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1[more]
BLAST of CmaCh04G019770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G019770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|823251220|ref|XP_012458219.1|1.4e-2657.27PREDICTED: uncharacterized protein LOC105779014 [Gossypium raimondii][more]
gi|823166069|ref|XP_012482973.1|1.8e-2653.64PREDICTED: uncharacterized protein LOC105797563 [Gossypium raimondii][more]
gi|823138056|ref|XP_012468865.1|1.8e-2653.64PREDICTED: uncharacterized protein LOC105786943 [Gossypium raimondii][more]
gi|823166071|ref|XP_012482974.1|1.8e-2657.27PREDICTED: uncharacterized protein LOC105797566 [Gossypium raimondii][more]
gi|823232051|ref|XP_012448731.1|2.3e-2653.64PREDICTED: uncharacterized protein LOC105771899 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019770.1CmaCh04G019770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 68..144
score: 6.4
NoneNo IPR availableunknownCoilCoilcoord: 1..21
scor
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 74..173
score: 9.6
NoneNo IPR availablePANTHERPTHR22847:SF490SUBFAMILY NOT NAMEDcoord: 74..173
score: 9.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019770Cucurbita pepo (Zucchini)cmacpeB721
CmaCh04G019770Cucurbita maxima (Rimu)cmacmaB018
CmaCh04G019770Cucurbita moschata (Rifu)cmacmoB679
CmaCh04G019770Watermelon (Charleston Gray)cmawcgB622