CmaCh04G019750 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019750
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCma_Chr04 : 11442054 .. 11442983 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATCCAGACAACAATACTGACATTACTGATGCACGATTGAGAGAAGCCCAACAACGAACAATGGAAAGACTAATTCGAGGAAGAGAAGAGTTGACTGATCGAATAGGTAGATTGGAGATTCAAAATCAAGCTCGACAGAGGATTCCATTACCTACGCCCTCAACCGATACATATGAGGGCGACAATTCTGATCACCACGAGGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTAAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACACAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATTCAACGAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAGGGATAGTAAGAAAGTTGATTATAAGCATAGAAATCAAGATTAA

mRNA sequence

ATGGAAAATCCAGACAACAATACTGACATTACTGATGCACGATTGAGAGAAGCCCAACAACGAACAATGGAAAGACTAATTCGAGGAAGAGAAGAGTTGACTGATCGAATAGGTAGATTGGAGATTCAAAATCAAGCTCGACAGAGGATTCCATTACCTACGCCCTCAACCGATACATATGAGGGCGACAATTCTGATCACCACGAGGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTAAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACACAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATTCAACGAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAGGGATAGTAAGAAAGTTGATTATAAGCATAGAAATCAAGATTAA

Coding sequence (CDS)

ATGGAAAATCCAGACAACAATACTGACATTACTGATGCACGATTGAGAGAAGCCCAACAACGAACAATGGAAAGACTAATTCGAGGAAGAGAAGAGTTGACTGATCGAATAGGTAGATTGGAGATTCAAAATCAAGCTCGACAGAGGATTCCATTACCTACGCCCTCAACCGATACATATGAGGGCGACAATTCTGATCACCACGAGGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTAAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACACAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATTCAACGAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAGGGATAGTAAGAAAGTTGATTATAAGCATAGAAATCAAGATTAA

Protein sequence

MENPDNNTDITDARLREAQQRTMERLIRGREELTDRIGRLEIQNQARQRIPLPTPSTDTYEGDNSDHHEDNPHVVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKTDPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKRDSKKVDYKHRNQD
Homology
[Close]
BLAST of CmaCh04G019750 vs. TrEMBL
Match: E7BQD6_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.7e-51
Identity = 101/196 (51.53%), Postives = 140/196 (71.43%), Query Frame = 1 

Query: 105 NVGSIKLKLPKFYGKTDPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDK 164
           N+  IK+K+P F GK+DPE YL+WE  +E + NCHN+S+ +KV +   +FK+YA +WWD+
Sbjct: 68  NLRGIKIKVPTFVGKSDPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQ 127

Query: 165 LMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTL 224
           L   RRR  E PID+W E K  MR+RFVP Y+HR++  KLQ L QG KSVE+Y+KEM+ L
Sbjct: 128 LTKDRRRYAERPIDTWEEMKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVL 187

Query: 225 MDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSS 284
             R  ++ED EA MARFL+GLN +I+D  +L  Y  ++EL+H AIK+E+Q++R+SQ   +
Sbjct: 188 KIRANVEEDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQARRN 247

Query: 285 KTFPNSTSTWKRDSKK 301
            T  NS S WK  +KK
Sbjct: 248 STTFNSQS-WKDKTKK 262

[Close]
BLAST of CmaCh04G019750 vs. TrEMBL
Match: E7BQD7_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 9.7e-51
Identity = 100/196 (51.02%), Postives = 141/196 (71.94%), Query Frame = 1 

Query: 105 NVGSIKLKLPKFYGKTDPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDK 164
           N+  IK+K+P F GK+DPE YL+WE  +E + NCHN+S+ +KV +   +FK+YA +WWD+
Sbjct: 68  NLRGIKIKVPTFVGKSDPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQ 127

Query: 165 LMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTL 224
           L+  RRR  E PID+W E K  MR+RFVP Y+HR++  KL+ L QG KSVE+Y+KEM+ L
Sbjct: 128 LIKDRRRYAERPIDTWEEMKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVL 187

Query: 225 MDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSS 284
             R  ++ED EA MARFL+GLN +I+D  +L  Y  ++EL+H AIK+E+Q++R+SQ   +
Sbjct: 188 KIRANVEEDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQARRN 247

Query: 285 KTFPNSTSTWKRDSKK 301
            T  NS S WK  +KK
Sbjct: 248 STTFNSQS-WKDKTKK 262

[Close]
BLAST of CmaCh04G019750 vs. TrEMBL
Match: A5AZG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.4e-49
Identity = 94/188 (50.00%), Postives = 142/188 (75.53%), Query Frame = 1 

Query: 113 LPKFYGKTDPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRN 172
           +P F GK +PE YL+WEK VE +  CHN+S+EKKV L + +F  YA IWWD+L+ +RRRN
Sbjct: 68  IPSFQGKNNPEVYLEWEKKVEFIFECHNYSEEKKVKLAVIEFTDYAIIWWDQLVMNRRRN 127

Query: 173 LEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDE 232
            E PI++W E K +MR+ FVP +++RD+ QKLQ+L QG++SV+DY+KEM+  M R  ++E
Sbjct: 128 YERPIETWEEMKATMRRWFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRANVEE 187

Query: 233 DMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTS 292
           D EA MARFLNGLN +IA+  +LQ Y ++E+++H+AIK+E++++R+  R  S   P+S +
Sbjct: 188 DREATMARFLNGLNWDIANVVELQHYVDLEDMVHMAIKVEQRLKRKETR--SFQNPDSFA 247

Query: 293 TWKRDSKK 301
           +W+ + +K
Sbjct: 248 SWRPNGRK 253

[Close]
BLAST of CmaCh04G019750 vs. TrEMBL
Match: A0A151U9W8_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.2e-48
Identity = 97/206 (47.09%), Postives = 141/206 (68.45%), Query Frame = 1 

Query: 94  QRVPYDDRIDRNVGSIKLKLPKFYGKTDPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQ 153
           +R  ++ R D ++G+IK+ +P F GK DPE YL+WE+ VE V +CHN+S+EKKV L + +
Sbjct: 16  ERRSFELRSDNHLGNIKMTIPTFQGKNDPELYLEWERKVEHVFDCHNYSEEKKVKLAVVE 75

Query: 154 FKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKS 213
           F  Y  IWWD+ + ++RRN E  I +W E K  +R+RFVP ++HRD+ +KLQ+L QG  S
Sbjct: 76  FTDYVSIWWDQFVINKRRNGERFICTWEEMKVVIRRRFVPSHYHRDLHRKLQSLTQGSMS 135

Query: 214 VEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIER 273
           VEDYYKEM+  M R+ ++ED E  MARF+ GL  E+ D  +LQ Y  +E+LLH AI++ER
Sbjct: 136 VEDYYKEMELAMIRVNVEEDYEVTMARFIGGLKKEMVDVVELQHYVEVEDLLHKAIQVER 195

Query: 274 QIQRRSQRYSSKTFPNSTSTWKRDSK 300
           Q++ +     SK   +S S W+ + K
Sbjct: 196 QMKSKG---PSKVNSSSNSLWRSNWK 218

[Close]
BLAST of CmaCh04G019750 vs. TrEMBL
Match: Q9LQH2_ARATH (F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.2e-48
Identity = 101/225 (44.89%), Postives = 153/225 (68.00%), Query Frame = 1 

Query: 81  RGRDHGRRYHNLQQRV-PYDDRIDRNVGSIKLKLPKFYGKTDPEEYLQWEKTVESVLNCH 140
           R  +H RR H+ ++RV P DD     +  +K+++P F G  DP+EYL+WEK +E V NC 
Sbjct: 413 RQTNHRRRRHDREERVLPRDD-----LAGLKIRIPSFKGTNDPDEYLEWEKKIELVFNCQ 472

Query: 141 NFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRD 200
            +++E KV +   +F+ YA  WWD+L+++RRR  + PI+SW + K  MRKRFVP +++R+
Sbjct: 473 QYTEESKVKVAPTEFQNYALSWWDQLVTTRRRAGDYPIESWTQMKTIMRKRFVPSHYYRE 532

Query: 201 MAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYS 260
           +  +L+ L QG+KSVE+YYKEM+TLM R ++ ED EA+M+RF+ GLN +I D+ ++Q Y 
Sbjct: 533 LHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLEVQHYV 592

Query: 261 NIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKRDSKKVDYK 305
            +EELLH AI  E+Q++RRS + S  +   S    +R   + DYK
Sbjct: 593 ELEELLHKAIMFEKQLKRRSSKPSFGSGKPSYHKDERSGFQKDYK 632

[Close]
BLAST of CmaCh04G019750 vs. TAIR10
Match: AT2G15180.1 (AT2G15180.1 Zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 6.5e-06
Identity = 23/70 (32.86%), Postives = 35/70 (50.00%), Query Frame = 1 

Query: 125 YLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFK 184
           YLQWE  +      H+ + E K+ + + Q K  A  WWD+   +R     API +W   K
Sbjct: 119 YLQWESNMNYYFEFHSTAQEDKLSIALGQLKGSALWWWDQDEYNRWYERRAPIRTWERLK 178

Query: 185 ESMRKRFVPQ 195
            +M  ++ PQ
Sbjct: 179 WNMCAKYSPQ 188

[Close]
BLAST of CmaCh04G019750 vs. NCBI nr
Match: gi|568833665|ref|XP_006470999.1| (PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis])

HSP 1 Score: 228.8 bits (582), Expect = 1.3e-56
Identity = 116/235 (49.36%), Postives = 166/235 (70.64%), Query Frame = 1 

Query: 61  EGDNSDHHEDNPHVVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120
           +GD+ D  +D   V     MRGRD+ R             R+DR++GSIKLK+P F GK 
Sbjct: 69  DGDDVDDFDDQATVD----MRGRDNRRA-----------SRMDRDLGSIKLKIPSFQGKN 128

Query: 121 DPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180
           DPE YL+WEK VE V +CHN+S+EKKV L   +F  YA IWWD+L+ SRRRN E PI++W
Sbjct: 129 DPEAYLEWEKKVELVFDCHNYSEEKKVKLAAVEFTDYAIIWWDQLVLSRRRNRERPINTW 188

Query: 181 VEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMAR 240
            E K  MR+RFVP +++R++ Q+LQ+L QG +SVEDY+KEM+ +M R  ++E+ EA MAR
Sbjct: 189 EEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIMIRANIEEEREATMAR 248

Query: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWK 296
           FL+GLN +IA+  DLQ Y  +E+++H+A+K+ERQ++++    S++T   S+S+WK
Sbjct: 249 FLHGLNQDIANVVDLQHYVELEDMVHMAMKVERQLKKKG---STRTNLGSSSSWK 285

[Close]
BLAST of CmaCh04G019750 vs. NCBI nr
Match: gi|823162032|ref|XP_012480916.1| (PREDICTED: uncharacterized protein LOC105795805 [Gossypium raimondii])

HSP 1 Score: 223.8 bits (569), Expect = 4.2e-55
Identity = 124/289 (42.91%), Postives = 183/289 (63.32%), Query Frame = 1 

Query: 16  REAQQRTMERLIRGR-EELTDRIGRLEIQNQARQRIPLPTPSTDTYEGDNSDHHEDNPHV 75
           ++A  R ++R+IRG  E + +R+ R+E+ NQ       P    D  E +  D ++ N   
Sbjct: 25  QQALLREIQRMIRGELESVNERLDRVELGNQRECTPQGPQRGRDQLEINQDDLYDPNEAE 84

Query: 76  VGHG--LMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKTDPEEYLQWEKTV 135
              G  +  GR   R   N  QR     R+D ++ +IKL +P F GK+DPE YL+WEK +
Sbjct: 85  SDQGSNISEGRRGQRNRGNRNQR-----RMDDDLRNIKLSIPSFQGKSDPEAYLEWEKKI 144

Query: 136 ESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFV 195
           E V +CHN+S+ KKV L   +F  YA IWWD+L +SRRRN E PI +W E K  MR+ F+
Sbjct: 145 ELVFDCHNYSEIKKVKLAAIEFSDYAMIWWDQLTTSRRRNGERPISTWAEMKAVMRRHFI 204

Query: 196 PQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADK 255
           P Y+HR++ QKLQ L QG +SVEDY+KEM+  M R ++ E+ EA MARFL GLN +IA+ 
Sbjct: 205 PSYYHRELYQKLQNLTQGSRSVEDYFKEMEIAMIRADIQENREATMARFLAGLNRDIANV 264

Query: 256 TDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFP-NSTSTWKRDSKK 301
            +LQ Y  I +++H+AIK+E+Q++R+S   +++++P  ST+ W +   K
Sbjct: 265 VELQHYVEIVDMVHMAIKVEKQLKRKS---TTRSYPTTSTTRWGQSMSK 305

[Close]
BLAST of CmaCh04G019750 vs. NCBI nr
Match: gi|985456365|ref|XP_015387373.1| (PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis])

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 116/235 (49.36%), Postives = 165/235 (70.21%), Query Frame = 1 

Query: 61  EGDNSDHHEDNPHVVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120
           +GD+ D  +D   V     MRGRD+ R             RIDR++GSIKLK+P F GK 
Sbjct: 69  DGDDVDDFDDQATVD----MRGRDNRRAR-----------RIDRDLGSIKLKIPSFQGKH 128

Query: 121 DPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180
           DPE YL+WEK VE V +CHN+S+EKKV L   +F  YA IWWD+L+ SRRRN E PI++W
Sbjct: 129 DPEAYLEWEKKVELVFDCHNYSEEKKVKLVAVEFTDYAIIWWDQLVLSRRRNRERPINTW 188

Query: 181 VEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMAR 240
            E K  MR+RFVP +++R++ Q+LQ+L QG +SVEDY+KEM+ +M R  ++E+ E  MAR
Sbjct: 189 EEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIMIRANIEEERET-MAR 248

Query: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWK 296
           FL+GLN +IA+  DLQ Y  +E+++H+A+K+ERQ++++    S++T   S+S+WK
Sbjct: 249 FLHGLNQDIANVVDLQHYVELEDMVHMAMKVERQLKKKG---STRTNLGSSSSWK 284

[Close]
BLAST of CmaCh04G019750 vs. NCBI nr
Match: gi|985466622|ref|XP_015389621.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102627722 [Citrus sinensis])

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 115/235 (48.94%), Postives = 163/235 (69.36%), Query Frame = 1 

Query: 61  EGDNSDHHEDNPHVVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120
           + D+ D  +D   V     MRGRD+ R             RIDR++GSIKLK+P F GK 
Sbjct: 69  DDDDIDDFDDQATVD----MRGRDNRRAR-----------RIDRDLGSIKLKIPSFQGKN 128

Query: 121 DPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180
           DPE YL+WEK VE V +CHN+  EKKV L   +F  YA IWWD+L+ SRRRN E PI++W
Sbjct: 129 DPEAYLEWEKKVELVFDCHNYFKEKKVKLAAVEFTDYAIIWWDQLVLSRRRNRERPINTW 188

Query: 181 VEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMAR 240
            E K  MR+RFVP +++R++ Q+LQ+L QG +SVEDY+KEM+ +M R  ++E+ EA MAR
Sbjct: 189 EEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIMIRANIEEEREATMAR 248

Query: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWK 296
           FL+GLN +IA+  DLQ Y  +E+++H+A+K+ERQ++++    S++T   S+S+WK
Sbjct: 249 FLHGLNQDIANVIDLQYYVELEDMVHMAMKVERQLKKKG---STRTNLGSSSSWK 285

[Close]
BLAST of CmaCh04G019750 vs. NCBI nr
Match: gi|823145103|ref|XP_012472415.1| (PREDICTED: uncharacterized protein LOC105789589 [Gossypium raimondii])

HSP 1 Score: 220.3 bits (560), Expect = 4.6e-54
Identity = 123/273 (45.05%), Postives = 173/273 (63.37%), Query Frame = 1 

Query: 41  EIQNQARQRIPL-PTPSTDTYEGDNSDHHEDNPHVVGHG--LMRGRDHGRRYHNLQQRVP 100
           EIQ   R+R P  P    D  E +  D ++ N      G  +  GR   R   N  QR  
Sbjct: 31  EIQRMIRERTPQGPQRRRDQLEINQDDLYDPNEAESDQGSNISEGRRGQRNRGNRNQR-- 90

Query: 101 YDDRIDRNVGSIKLKLPKFYGKTDPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQY 160
              R+D ++ +IKL +P F GK DPE YL+WEK +E V +CHN+S+ KKV L   +F  Y
Sbjct: 91  ---RMDDDLRNIKLSIPSFQGKFDPEAYLEWEKKIELVFDCHNYSEIKKVKLAAIEFSDY 150

Query: 161 AQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDY 220
           A IWWD+L +SRRRN E PI +W E K  MR+RF+P Y+HR++ QKLQ L QG KSVEDY
Sbjct: 151 AMIWWDQLTTSRRRNGERPISTWAEMKAVMRRRFIPSYYHRELYQKLQNLTQGSKSVEDY 210

Query: 221 YKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQR 280
           +KEM+  M R ++ ED EA MARFL GLN +IA+  +LQ Y  I +++H+AIK+E+Q+++
Sbjct: 211 FKEMEIAMIRADVQEDREATMARFLAGLNRDIANIVELQHYVEIVDMVHMAIKVEKQLKQ 270

Query: 281 RSQRYSSKTFPN-STSTWKRDSKKVDYKHRNQD 310
           +S   ++++FP  ST+ W + S K +   R ++
Sbjct: 271 KS---TTRSFPTPSTTRWGQSSSKTNPPSRAKE 295

The following BLAST results are available for this feature:
BLAST of CmaCh04G019750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G019750 vs. TrEMBL
Match NameE-valueIdentityDescription
E7BQD6_PEA5.7e-5151.53Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
E7BQD7_PEA9.7e-5151.02Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
A5AZG1_VITVI2.4e-4950.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1[more]
A0A151U9W8_CAJCA1.2e-4847.09Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1[more]
Q9LQH2_ARATH1.2e-4844.89F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1[more]
BLAST of CmaCh04G019750 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G15180.16.5e-0632.86 Zinc knuckle (CCHC-type) family protein[more]
BLAST of CmaCh04G019750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|568833665|ref|XP_006470999.1|1.3e-5649.36PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis][more]
gi|823162032|ref|XP_012480916.1|4.2e-5542.91PREDICTED: uncharacterized protein LOC105795805 [Gossypium raimondii][more]
gi|985456365|ref|XP_015387373.1|1.2e-5449.36PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis][more]
gi|985466622|ref|XP_015389621.1|1.2e-5448.94PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102627722 [Citrus sin... [more]
gi|823145103|ref|XP_012472415.1|4.6e-5445.05PREDICTED: uncharacterized protein LOC105789589 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019750.1CmaCh04G019750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 153..247
score: 3.2
NoneNo IPR availableunknownCoilCoilcoord: 16..43
scor
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 101..276
score: 5.7
NoneNo IPR availablePANTHERPTHR22847:SF490SUBFAMILY NOT NAMEDcoord: 101..276
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019750Cucurbita maxima (Rimu)cmacmaB018
CmaCh04G019750Cucurbita moschata (Rifu)cmacmoB679
CmaCh04G019750Watermelon (Charleston Gray)cmawcgB622