CmaCh04G019620 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019620
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProtein Ycf2
LocationCma_Chr04 : 10984187 .. 10985409 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCGATCCTCTTCCTCTTTTCTTTCTCGAACCGAGATATCCATGAATCGGGATTCTAATGCAGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGTAGAGCCATTTTCAAGTAGTGTTCGATCGATTACGTATTAATCTATATTCGATGGATTGGTCTGAGGTTATCGAGAAAAAAGATTTGTCTAAGTCACTTCCTTTCTTTTTTTCCAAGTTTCTTCTACTTCTGACTCACTTCCTTTTTTCTTTGTGAGTTTCGGGATTATCCCCATTAATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGGAATCAGTTGTTAGAATCAAGAGGTCTGAAAAGAGTTTGAATTTGACAAAATGGAAACCCTGATTATTGGATGATCATGAGACTTCCCAAAAAGAGAAATTCTTGATCAAGAACAATATAACGATTTTTCTTCAATAAGATACCAAAGTGGATGATTTACTCATTCCATACTAGAAAGAATCGCAGGAAATCCTTTGATAACACTCTCCTATTTCTCAATGATATCCCACGATCAAGACAATTGGCTAAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGAAACTCTACTTCGATTATGGAATAATCCACATCACTTCTGTCTGCTTCTATTGTAACAAAAGATTCCCTTTCTTTTGATGTATGTTGATTATGTGGAAAAGGCTCGTATCAATAATTCTGATTTGTGACGCATGGACAATTCCTCAGTATCTTGTTCATTCGCAACAAAATCTTTTCTTTCCGCGGCGGTAAAAAAAACATGCTGGGAGAGAGATACTATTTCACCAATAGAGTCACAGGTATCTAACATATTCATACCTAACGATTTTACACAAAGTGGAAAGGTATAACTTGTACAAATCTTTCCATTTTCCAATTCGATCCGATCCATTCGTTCGTCGAGCTATTTACTCGATCGCAGACATTTCTGGAACACCTCTAACTTAACAGAGGGACAAATAGTCAATTTTGAAAGAACTTATTGTCAACCTCTTTCAGATATGAATCTATCTTATTCAGAGGGGAAGAACTTGCATCAATATCTCAATTTCAATTCAAAGATGGGGCTTTGATTCACACTCCATGTTATGAGAAAGATTTACCATCCGAAAAGAGGAAAAAATGA

mRNA sequence

ATGGTTCGATCCTCTTCCTCTTTTCTTTCTCGAACCGAGATATCCATGAATCGGGATTCTAATGCAGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCATTTCGGGATTATCCCCATTAATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGGAATCAGTTGTTAGAATCAAGAGGTCTGAAAAGATATCTTGTTCATTCGCAACAAAATCTTTTCTTTCCGCGGCGATATGAATCTATCTTATTCAGAGGGGAAGAACTTGCATCAATATCTCAATTTCAATTCAAAGATGGGGCTTTGATTCACACTCCATGTTATGAGAAAGATTTACCATCCGAAAAGAGGAAAAAATGA

Coding sequence (CDS)

ATGGTTCGATCCTCTTCCTCTTTTCTTTCTCGAACCGAGATATCCATGAATCGGGATTCTAATGCAGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCATTTCGGGATTATCCCCATTAATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGGAATCAGTTGTTAGAATCAAGAGGTCTGAAAAGATATCTTGTTCATTCGCAACAAAATCTTTTCTTTCCGCGGCGATATGAATCTATCTTATTCAGAGGGGAAGAACTTGCATCAATATCTCAATTTCAATTCAAAGATGGGGCTTTGATTCACACTCCATGTTATGAGAAAGATTTACCATCCGAAAAGAGGAAAAAATGA

Protein sequence

MVRSSSSFLSRTEISMNRDSNAAYRYKWSNGSKNFQEHFISEHFGIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRYLVHSQQNLFFPRRYESILFRGEELASISQFQFKDGALIHTPCYEKDLPSEKRKK
Homology
[Close]
BLAST of CmaCh04G019620 vs. Swiss-Prot
Match: YCF2_NYMAL (Protein Ycf2 OS=Nymphaea alba GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 52/133 (39.10%), Postives = 59/133 (44.36%), Query Frame = 1 

Query: 9   LSRTEISMNRDSNAAYRYKWSNG------------------------------------- 68
           +SRTE SMNRD NA YRYKWSNG                                     
Sbjct: 797 ISRTERSMNRDPNA-YRYKWSNGSKNFQEHLEHFVSEQKNRFQVVFDRLRINQHSIDWSK 856

Query: 69  ----------------------SKNFQEHFISEHFGIIPINRSEIHIYELKGPNDQLWNQ 83
                                 SK+    F+S   G IPI+RSEIHIYELKGPNDQL NQ
Sbjct: 857 VIDKQDLSKSLHFFLSKSLLFLSKSLTFFFVS--IGNIPIHRSEIHIYELKGPNDQLCNQ 916

[Close]
BLAST of CmaCh04G019620 vs. Swiss-Prot
Match: YCF2_NUPAD (Protein Ycf2 OS=Nuphar advena GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 52/133 (39.10%), Postives = 59/133 (44.36%), Query Frame = 1 

Query: 9   LSRTEISMNRDSNAAYRYKWSNG------------------------------------- 68
           +SRTE SMNRD NA YRYKWSNG                                     
Sbjct: 797 ISRTERSMNRDPNA-YRYKWSNGSKNFQEHLEHFVSEQKNRFQVVFDRLRINQHSIDWSK 856

Query: 69  ----------------------SKNFQEHFISEHFGIIPINRSEIHIYELKGPNDQLWNQ 83
                                 SK+    F+S   G IPI+RSEIHIYELKGPNDQL NQ
Sbjct: 857 VIDKQDLSKSLHFFLSKSLLFLSKSLTFFFVS--IGNIPIHRSEIHIYELKGPNDQLCNQ 916

[Close]
BLAST of CmaCh04G019620 vs. Swiss-Prot
Match: YCF2_AMBTC (Protein Ycf2 OS=Amborella trichopoda GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 52/133 (39.10%), Postives = 59/133 (44.36%), Query Frame = 1 

Query: 9   LSRTEISMNRDSNAAYRYKWSNG------------------------------------- 68
           +SRTE SMNRD NA YRYKWSNG                                     
Sbjct: 798 ISRTERSMNRDPNA-YRYKWSNGSKNFQEHLEHFVSEQKNRFQVVFDRLRINQHSIDWSE 857

Query: 69  ----------------------SKNFQEHFISEHFGIIPINRSEIHIYELKGPNDQLWNQ 83
                                 SK+    F+S   G IPI+RSEIHIYELKGPNDQL NQ
Sbjct: 858 VIDKQDLSKSLRFFLSKSLLFLSKSLPFFFVS--IGNIPIHRSEIHIYELKGPNDQLCNQ 917

[Close]
BLAST of CmaCh04G019620 vs. Swiss-Prot
Match: YCF2_CITSI (Protein Ycf2 OS=Citrus sinensis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-10
Identity = 52/133 (39.10%), Postives = 58/133 (43.61%), Query Frame = 1 

Query: 9   LSRTEISMNRDSNAAYRYKWSNG------------------------------------- 68
           +SRTE  MNRD NA YRYKWSNG                                     
Sbjct: 798 ISRTERFMNRDPNA-YRYKWSNGSKNFQEHLKHFVSEQKSRFQVVFDRLRINQYSIDWSE 857

Query: 69  ----------------------SKNFQEHFISEHFGIIPINRSEIHIYELKGPNDQLWNQ 83
                                 S +    F+S  FG IPI+RSEIHIYELKGPNDQL NQ
Sbjct: 858 VIDKKDLSKPLPFFLSKFLFFLSNSLPFFFVS--FGNIPIHRSEIHIYELKGPNDQLCNQ 917

[Close]
BLAST of CmaCh04G019620 vs. Swiss-Prot
Match: YCF2_BUXMI (Protein Ycf2 OS=Buxus microphylla GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.1e-10
Identity = 52/137 (37.96%), Postives = 60/137 (43.80%), Query Frame = 1 

Query: 9   LSRTEISMNRDSNAAYRYKWSNG------------------------------------- 68
           +SRTE SMNRD +A YRYKWSNG                                     
Sbjct: 799 ISRTERSMNRDPDA-YRYKWSNGSKNFQEHFVSEQKSRFQVVFDRLRINQYSIDWSEVID 858

Query: 69  --------------------------SKNFQEHFISEHFGIIPINRSEIHIYELKGPNDQ 83
                                     SK+    F+S  FG IPI+RSEIHIYELKGPNDQ
Sbjct: 859 KKDLSKSLRFFLSKSLLFLSKSLLFLSKSLPFFFVS--FGNIPIHRSEIHIYELKGPNDQ 918

[Close]
BLAST of CmaCh04G019620 vs. TrEMBL
Match: A6YA73_9MAGN (Protein Ycf2 OS=Saxifraga stolonifera GN=ycf2 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.4e-11
Identity = 58/167 (34.73%), Postives = 72/167 (43.11%), Query Frame = 1 

Query: 8   FLSRTEISMNRDSNAAYRYKWSNG------------------------------------ 67
           F+SRTE S NRD NA YRYKWSNG                                    
Sbjct: 799 FISRTERSTNRDPNA-YRYKWSNGSNNFQEHLEHFVSEQKSRFQVVFDQLRINQYSIDWS 858

Query: 68  ----------------------SKNFQEHFISEHFGIIPINRSEIHIYELKGPNDQLWNQ 117
                                 S +    F+S  FG IPI+RSEIHIYELKGPNDQLWNQ
Sbjct: 859 EVIDKKDLSKSLLFLSKLLLFLSNSLPFFFVS--FGNIPIHRSEIHIYELKGPNDQLWNQ 918

[Close]
BLAST of CmaCh04G019620 vs. TrEMBL
Match: A0A0X9R632_9ASPA (Protein Ycf2 OS=Goodyera schlechtendaliana GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 54/123 (43.90%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 7   SFLSRTEISMNRDSNAAYRYKWSNGSKNF----------------------------QEH 66
           S +SRTE SMN D +A YRYKWSNGSKNF                             E 
Sbjct: 790 SLISRTERSMNWDPDA-YRYKWSNGSKNFQEHFVSEQKNPFQVVFDRLRINQYLIDWSEA 849

Query: 67  FISEHF-------------------GIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRY 83
              E+F                   G IPI+RSEIHIYELKGPNDQL NQLLES G++  
Sbjct: 850 IDKEYFSKSLRFFLSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQ-- 909

[Close]
BLAST of CmaCh04G019620 vs. TrEMBL
Match: A0A0U2DUS0_9ASPA (Protein Ycf2 OS=Anoectochilus roxburghii GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 54/123 (43.90%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 7   SFLSRTEISMNRDSNAAYRYKWSNGSKNF----------------------------QEH 66
           S +SRTE SMN D +A YRYKWSNGSKNF                             E 
Sbjct: 790 SLISRTERSMNWDPDA-YRYKWSNGSKNFQEHFVSEQKNPFQVVFDRLRINQYLIDWSEA 849

Query: 67  FISEHF-------------------GIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRY 83
              E+F                   G IPI+RSEIHIYELKGPNDQL NQLLES G++  
Sbjct: 850 IDKEYFSKSLRFFLSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQ-- 909

[Close]
BLAST of CmaCh04G019620 vs. TrEMBL
Match: A0A0X9RB61_9ASPA (Protein Ycf2 OS=Goodyera schlechtendaliana GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 54/123 (43.90%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 7   SFLSRTEISMNRDSNAAYRYKWSNGSKNF----------------------------QEH 66
           S +SRTE SMN D +A YRYKWSNGSKNF                             E 
Sbjct: 790 SLISRTERSMNWDPDA-YRYKWSNGSKNFQEHFVSEQKNPFQVVFDRLRINQYLIDWSEA 849

Query: 67  FISEHF-------------------GIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRY 83
              E+F                   G IPI+RSEIHIYELKGPNDQL NQLLES G++  
Sbjct: 850 IDKEYFSKSLRFFLSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQ-- 909

[Close]
BLAST of CmaCh04G019620 vs. TrEMBL
Match: A0A0X9TL62_9ASPA (Protein Ycf2 OS=Goodyera schlechtendaliana GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 54/123 (43.90%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 7   SFLSRTEISMNRDSNAAYRYKWSNGSKNF----------------------------QEH 66
           S +SRTE SMN D +A YRYKWSNGSKNF                             E 
Sbjct: 790 SLISRTERSMNWDPDA-YRYKWSNGSKNFQEHFVSEQKNPFQVVFDRLRINQYLIDWSEA 849

Query: 67  FISEHF-------------------GIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRY 83
              E+F                   G IPI+RSEIHIYELKGPNDQL NQLLES G++  
Sbjct: 850 IDKEYFSKSLRFFLSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQ-- 909

[Close]
BLAST of CmaCh04G019620 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-09
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 1 

Query: 39  FISEHFGIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRYLVH 83
           F    F  IPI+RSEIHIYELKGPNDQL NQLLES GL+  +VH
Sbjct: 899 FFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQ--IVH 940

[Close]
BLAST of CmaCh04G019620 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-09
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 1 

Query: 39  FISEHFGIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRYLVH 83
           F    F  IPI+RSEIHIYELKGPNDQL NQLLES GL+  +VH
Sbjct: 899 FFFVSFENIPIHRSEIHIYELKGPNDQLCNQLLESIGLQ--IVH 940

[Close]
BLAST of CmaCh04G019620 vs. NCBI nr
Match: gi|146261322|gb|ABQ14933.1| (Ycf2 [Saxifraga stolonifera])

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 58/167 (34.73%), Postives = 72/167 (43.11%), Query Frame = 1 

Query: 8   FLSRTEISMNRDSNAAYRYKWSNG------------------------------------ 67
           F+SRTE S NRD NA YRYKWSNG                                    
Sbjct: 799 FISRTERSTNRDPNA-YRYKWSNGSNNFQEHLEHFVSEQKSRFQVVFDQLRINQYSIDWS 858

Query: 68  ----------------------SKNFQEHFISEHFGIIPINRSEIHIYELKGPNDQLWNQ 117
                                 S +    F+S  FG IPI+RSEIHIYELKGPNDQLWNQ
Sbjct: 859 EVIDKKDLSKSLLFLSKLLLFLSNSLPFFFVS--FGNIPIHRSEIHIYELKGPNDQLWNQ 918

[Close]
BLAST of CmaCh04G019620 vs. NCBI nr
Match: gi|874508931|gb|AKP95073.1| (hypothetical chloroplast RF2 (chloroplast) [Anoectochilus roxburghii])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 54/123 (43.90%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 7   SFLSRTEISMNRDSNAAYRYKWSNGSKNF----------------------------QEH 66
           S +SRTE SMN D +A YRYKWSNGSKNF                             E 
Sbjct: 790 SLISRTERSMNWDPDA-YRYKWSNGSKNFQEHFVSEQKNPFQVVFDRLRINQYLIDWSEA 849

Query: 67  FISEHF-------------------GIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRY 83
              E+F                   G IPI+RSEIHIYELKGPNDQL NQLLES G++  
Sbjct: 850 IDKEYFSKSLRFFLSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQ-- 909

[Close]
BLAST of CmaCh04G019620 vs. NCBI nr
Match: gi|975854062|gb|AMA07154.1| (conserved hypothetical protein Ycf2 (chloroplast) [Goodyera schlechtendaliana])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 54/123 (43.90%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 7   SFLSRTEISMNRDSNAAYRYKWSNGSKNF----------------------------QEH 66
           S +SRTE SMN D +A YRYKWSNGSKNF                             E 
Sbjct: 790 SLISRTERSMNWDPDA-YRYKWSNGSKNFQEHFVSEQKNPFQVVFDRLRINQYLIDWSEA 849

Query: 67  FISEHF-------------------GIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRY 83
              E+F                   G IPI+RSEIHIYELKGPNDQL NQLLES G++  
Sbjct: 850 IDKEYFSKSLRFFLSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQ-- 909

[Close]
BLAST of CmaCh04G019620 vs. NCBI nr
Match: gi|1002161767|ref|YP_009231869.1| (hypothetical chloroplast RF2 (chloroplast) [Goodyera schlechtendaliana])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 54/123 (43.90%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 7   SFLSRTEISMNRDSNAAYRYKWSNGSKNF----------------------------QEH 66
           S +SRTE SMN D +A YRYKWSNGSKNF                             E 
Sbjct: 790 SLISRTERSMNWDPDA-YRYKWSNGSKNFQEHFVSEQKNPFQVVFDRLRINQYLIDWSEA 849

Query: 67  FISEHF-------------------GIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRY 83
              E+F                   G IPI+RSEIHIYELKGPNDQL NQLLES G++  
Sbjct: 850 IDKEYFSKSLRFFLSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQ-- 909

[Close]
BLAST of CmaCh04G019620 vs. NCBI nr
Match: gi|975854061|gb|AMA07153.1| (conserved hypothetical protein Ycf2 (chloroplast) [Goodyera schlechtendaliana])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 54/123 (43.90%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 7   SFLSRTEISMNRDSNAAYRYKWSNGSKNF----------------------------QEH 66
           S +SRTE SMN D +A YRYKWSNGSKNF                             E 
Sbjct: 790 SLISRTERSMNWDPDA-YRYKWSNGSKNFQEHFVSEQKNPFQVVFDRLRINQYLIDWSEA 849

Query: 67  FISEHF-------------------GIIPINRSEIHIYELKGPNDQLWNQLLESRGLKRY 83
              E+F                   G IPI+RSEIHIYELKGPNDQL NQLLES G++  
Sbjct: 850 IDKEYFSKSLRFFLSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQ-- 909

The following BLAST results are available for this feature:
BLAST of CmaCh04G019620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YCF2_NYMAL2.3e-1039.10Protein Ycf2 OS=Nymphaea alba GN=ycf2-A PE=3 SV=1[more]
YCF2_NUPAD2.3e-1039.10Protein Ycf2 OS=Nuphar advena GN=ycf2-A PE=3 SV=1[more]
YCF2_AMBTC2.3e-1039.10Protein Ycf2 OS=Amborella trichopoda GN=ycf2-A PE=3 SV=1[more]
YCF2_CITSI3.9e-1039.10Protein Ycf2 OS=Citrus sinensis GN=ycf2-A PE=3 SV=1[more]
YCF2_BUXMI5.1e-1037.96Protein Ycf2 OS=Buxus microphylla GN=ycf2-A PE=3 SV=1[more]
BLAST of CmaCh04G019620 vs. TrEMBL
Match NameE-valueIdentityDescription
A6YA73_9MAGN9.4e-1134.73Protein Ycf2 OS=Saxifraga stolonifera GN=ycf2 PE=3 SV=1[more]
A0A0X9R632_9ASPA1.6e-1043.90Protein Ycf2 OS=Goodyera schlechtendaliana GN=ycf2 PE=3 SV=1[more]
A0A0U2DUS0_9ASPA1.6e-1043.90Protein Ycf2 OS=Anoectochilus roxburghii GN=ycf2 PE=3 SV=1[more]
A0A0X9RB61_9ASPA1.6e-1043.90Protein Ycf2 OS=Goodyera schlechtendaliana GN=ycf2 PE=3 SV=1[more]
A0A0X9TL62_9ASPA1.6e-1043.90Protein Ycf2 OS=Goodyera schlechtendaliana GN=ycf2 PE=3 SV=1[more]
BLAST of CmaCh04G019620 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00860.13.5e-0970.45ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core[more]
ATCG01280.13.5e-0970.45ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core[more]
BLAST of CmaCh04G019620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|146261322|gb|ABQ14933.1|1.4e-1034.73Ycf2 [Saxifraga stolonifera][more]
gi|874508931|gb|AKP95073.1|2.3e-1043.90hypothetical chloroplast RF2 (chloroplast) [Anoectochilus roxburghii][more]
gi|975854062|gb|AMA07154.1|2.3e-1043.90conserved hypothetical protein Ycf2 (chloroplast) [Goodyera schlechtendaliana][more]
gi|1002161767|ref|YP_009231869.1|2.3e-1043.90hypothetical chloroplast RF2 (chloroplast) [Goodyera schlechtendaliana][more]
gi|975854061|gb|AMA07153.1|2.3e-1043.90conserved hypothetical protein Ycf2 (chloroplast) [Goodyera schlechtendaliana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008543Uncharacterised_Ycf2
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019620.1CmaCh04G019620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008543Uncharacterised protein family Ycf2PFAMPF05695DUF825coord: 43..80
score: 3.3E-12coord: 8..41
score: 1.2
NoneNo IPR availablePANTHERPTHR33078FAMILY NOT NAMEDcoord: 8..76
score: 1.2
NoneNo IPR availablePANTHERPTHR33078:SF4SUBFAMILY NOT NAMEDcoord: 8..76
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G019620CmaCh08G006460Cucurbita maxima (Rimu)cmacmaB550
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019620Watermelon (97103) v2cmawmbB726
CmaCh04G019620Cucurbita moschata (Rifu)cmacmoB679
CmaCh04G019620Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G019620Watermelon (Charleston Gray)cmawcgB622
CmaCh04G019620Watermelon (97103) v1cmawmB739
CmaCh04G019620Bottle gourd (USVL1VR-Ls)cmalsiB635
CmaCh04G019620Cucumber (Gy14) v2cgybcmaB670
CmaCh04G019620Melon (DHL92) v3.6.1cmamedB737