CmaCh04G019610 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019610
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProtein Ycf2
LocationCma_Chr04 : 10982879 .. 10983938 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCACCATCGATATCGACACATCTGCGATCGCCAAATGTTCGAGAGTTCCTTTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGCTACAGACAGAGTGAGAAAAGGTCAAATCTTTATTGAGTTGCGAAAAGGATAGGTATCCCCATCTTCACTTCATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGATTCTTTAGAAGAAATAGGGTAGGGGGAGGGGGAGGGAGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGAGGTCAAATCAATACGTTCGAAGAAGAAAGATTTGAATATCAATCTCACTCATAAGTATCATACCAAATCCCATCAATAGAATAGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGATATATTATTCATTGATAAGACAAAATGTGAACGGTTATTGGATTGATGAGAAAGAAAGAGAATTCTTGGTTCACCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGATTCTGACTCATAGTGAGAATTTCTCAAAGAATGATTCTGGCTGGTTATCAAATGATTGAACAACCGGGAGTAATTGACTTAGGAGACTTAGTGGACATTCATCTTTAGCAGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAGCCTTATCCTCGGGGGTATTTTAGTGATAGGTTCTATAGGAACTAGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGGTATTTCTGAACAAGTTCCTAGATAACAAGCCTAAGAGTTTGATTATTGATTGATGATAGTGGCGGATGATAGTGAAGATATCGACCGTGACCTTGAGGCTGGAGCTTTTAAGATGAATGCGCTATGGATATGA

mRNA sequence

ATGAGTCACCATCGATATCGACACATCTGCGATCGCCAAATGTTCGAGAGTTCCTTTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGCTACAGACAGATTGCTCTGGAACAATTAGGAGATTCTTTAGAAGAAATAGGGTAGGGGGAGGGGGAGGGAGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGAGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAGCCTTATCCTCGGGGGAACTAGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTGGCGGATGATAGTGAAGATATCGACCGTGACCTTGAGGCTGGAGCTTTTAAGATGAATGCGCTATGGATATGA

Coding sequence (CDS)

ATGAGTCACCATCGATATCGACACATCTGCGATCGCCAAATGTTCGAGAGTTCCTTTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGCTACAGACAGATTGCTCTGGAACAATTAGGAGATTCTTTAGAAGAAATAGGGTAGGGGGAGGGGGAGGGAGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGAGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAGCCTTATCCTCGGGGGAACTAGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTGGCGGATGATAGTGAAGATATCGACCGTGACCTTGAGGCTGGAGCTTTTAAGATGAATGCGCTATGGATATGA

Protein sequence

MSHHRYRHICDRQMFESSFIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLALSSGELDDPSYLVKYLATNSYLPFITVADDSEDIDRDLEAGAFKMNALWI
Homology
[Close]
BLAST of CmaCh04G019610 vs. Swiss-Prot
Match: YCF2_PHAVU (Protein Ycf2 OS=Phaseolus vulgaris GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-12
Identity = 47/109 (43.12%), Postives = 57/109 (52.29%), Query Frame = 1 

Query: 89   DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLAL---SSGEL------DDPSYLV 148
            +RH  L   Q++ +   +W     +FPSHGKPFSLRLAL   S G L         SYLV
Sbjct: 1580 ERHIFLANYQTITYSQTLWGANSFHFPSHGKPFSLRLALPPPSRGILVIGSIGTGRSYLV 1639

Query: 149  KYLATNSYLPFITV-----------------------ADDSEDIDRDLE 166
            KYLA NSY+PFITV                       +DDS+DIDRDL+
Sbjct: 1640 KYLAKNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDSDDSDDIDRDLD 1688

[Close]
BLAST of CmaCh04G019610 vs. Swiss-Prot
Match: YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-11
Identity = 47/111 (42.34%), Postives = 54/111 (48.65%), Query Frame = 1 

Query: 89   DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLALSSGEL------DDPSYLVKYL 148
            +R + L   Q++ H          +FPSHGK FSLRLALS G L         SYLVKYL
Sbjct: 1291 ERRTFLAHYQTITHSQTSCGANSFHFPSHGKLFSLRLALSPGILVIGSIGTGRSYLVKYL 1350

Query: 149  ATNSYLPFITV----------------------------ADDSEDIDRDLE 166
            ATNSYLPFITV                             DDS+DIDRDL+
Sbjct: 1351 ATNSYLPFITVFLNKFRDNKPKFIDDSDDDSDDIDDSGDIDDSDDIDRDLD 1401

[Close]
BLAST of CmaCh04G019610 vs. Swiss-Prot
Match: YCF2_MORIN (Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 42/81 (51.85%), Postives = 47/81 (58.02%), Query Frame = 1 

Query: 113  NFPSHGKPFSLRLALSS-------GELDDP-SYLVKYLATNSYLPFITV----------- 166
            +FPSHGKPFSLRLALS        G +    SYLVKYLATNSY+PFITV           
Sbjct: 1620 HFPSHGKPFSLRLALSLSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPK 1679

[Close]
BLAST of CmaCh04G019610 vs. Swiss-Prot
Match: YCF2_SPIOL (Protein Ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 41/75 (54.67%), Postives = 46/75 (61.33%), Query Frame = 1 

Query: 113  NFPSHGKPFSLRLALSS-------GELDDP-SYLVKYLATNSYLPFITV----------- 166
            +FPSHGKPFSLRLALS        G +    SYLVKYLATNSY+PFITV           
Sbjct: 1460 HFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPK 1519

[Close]
BLAST of CmaCh04G019610 vs. Swiss-Prot
Match: YCF2_PLAOC (Protein Ycf2 OS=Platanus occidentalis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-10
Identity = 45/95 (47.37%), Postives = 49/95 (51.58%), Query Frame = 1 

Query: 114  FPSHGKPFSLRLALSS-------GELDDP-SYLVKYLATNSYLPFITV------------ 173
            FPSHGKPFSLRLALS        G +    SYLVKYLATNSY+PFITV            
Sbjct: 1619 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFPNKFLDDKPKG 1678

Query: 174  -------------ADDSEDIDRDLEAGAF-KMNAL 175
                          DDS+DID DL+      MNAL
Sbjct: 1679 YLIDDIDIDDSDDIDDSDDIDDDLDTELLTMMNAL 1713

[Close]
BLAST of CmaCh04G019610 vs. TrEMBL
Match: B9SHW9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0568360 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.4e-15
Identity = 84/216 (38.89%), Postives = 103/216 (47.69%), Query Frame = 1 

Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRA----YSELQTDCS-------------------GT 78
           F++SILFLLL+A YLVRTHLLFVSRA     +E +   S                     
Sbjct: 23  FLYSILFLLLVAGYLVRTHLLFVSRAYSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSE 82

Query: 79  IRRFFRRN-------RVGG---GGGSSASGGNMLWGGGPAYE----KDRHSLLIIRQSLI 138
           +  F+ +N       ++G        SASGGN LWGGGPAY     +     L I    +
Sbjct: 83  LNSFWLKNLFLVSLEQLGDFLEEMRGSASGGNKLWGGGPAYGVKSIRSEKKFLNINLIDL 142

Query: 139 HKPRVWL--------------IVCLNFPSHGKPFSLRLALSS-------GELDDP-SYLV 162
            K R++L              +   +FPSHGKPFSL LALS        G +    SYLV
Sbjct: 143 IKIRIFLTYYQTTTYSQTSCGVNSFHFPSHGKPFSLCLALSPSRGILVIGSIGTGRSYLV 202

[Close]
BLAST of CmaCh04G019610 vs. TrEMBL
Match: A0A0D2Q7J9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G166000 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 58/135 (42.96%), Postives = 71/135 (52.59%), Query Frame = 1 

Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNM 78
           F++SILFLLL+A YLVRTHLLFVSRAYSELQ +                           
Sbjct: 602 FLYSILFLLLVAGYLVRTHLLFVSRAYSELQIEFEKVKSLMI------------------ 661

Query: 79  LWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLALSSGELDDPSYL 138
                P+Y  + H  L   Q++ +          +FPS GKPFSLRLALS      PS  
Sbjct: 662 -----PSYMIELHIFLAHYQTITYSQTSCGANSFHFPSRGKPFSLRLALS------PSRG 707

Query: 139 VKYLATNSYLPFITV 154
           +  +ATNSY+PFITV
Sbjct: 722 ILVIATNSYVPFITV 707

[Close]
BLAST of CmaCh04G019610 vs. TrEMBL
Match: V7AXL5_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_009G090300g PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 47/109 (43.12%), Postives = 57/109 (52.29%), Query Frame = 1 

Query: 89  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLAL---SSGEL------DDPSYLV 148
           +RH  L   Q++ +   +W     +FPSHGKPFSLRLAL   S G L         SYLV
Sbjct: 12  ERHIFLANYQTITYSQTLWGANSFHFPSHGKPFSLRLALPPPSRGILVIGSIGTGRSYLV 71

Query: 149 KYLATNSYLPFITV-----------------------ADDSEDIDRDLE 166
           KYLA NSY+PFITV                       +DDS+DIDRDL+
Sbjct: 72  KYLAKNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDSDDSDDIDRDLD 120

[Close]
BLAST of CmaCh04G019610 vs. TrEMBL
Match: V7CB97_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_003G094800g PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.2e-10
Identity = 47/108 (43.52%), Postives = 56/108 (51.85%), Query Frame = 1 

Query: 90  RHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLAL---SSGEL------DDPSYLVK 149
           RH  L   Q++ +   +W     +FPSHGKPFSLRLAL   S G L         SYLVK
Sbjct: 1   RHIFLANYQTITYSQTLWGANSFHFPSHGKPFSLRLALPPPSRGILVIGSIGTGRSYLVK 60

Query: 150 YLATNSYLPFITV-----------------------ADDSEDIDRDLE 166
           YLA NSY+PFITV                       +DDS+DIDRDL+
Sbjct: 61  YLAKNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDSDDSDDIDRDLD 108

[Close]
BLAST of CmaCh04G019610 vs. TrEMBL
Match: I2E2M0_VIGUN (Protein Ycf2 OS=Vigna unguiculata GN=ycf2 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 48/115 (41.74%), Postives = 58/115 (50.43%), Query Frame = 1 

Query: 89   DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLAL---SSGEL------DDPSYLV 148
            +R   L   Q++ +   +W    L+FPSHGKPFSLRLAL   S G L         SYLV
Sbjct: 1581 ERRIFLANYQTITYSHTLWGANSLHFPSHGKPFSLRLALPPPSRGILVIGSIGTGRSYLV 1640

Query: 149  KYLATNSYLPFITV-----------------------------ADDSEDIDRDLE 166
            KYLATNSY+PFITV                             +DDS+DIDRDL+
Sbjct: 1641 KYLATNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDSDDIDDSDDSDDIDRDLD 1695

[Close]
BLAST of CmaCh04G019610 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-10
Identity = 38/76 (50.00%), Postives = 41/76 (53.95%), Query Frame = 1 

Query: 113  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV----------- 162
            +FPSHGKPFSLRLALS               SYLVKYLATNSY+PFITV           
Sbjct: 1624 HFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPK 1683

[Close]
BLAST of CmaCh04G019610 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-10
Identity = 38/76 (50.00%), Postives = 41/76 (53.95%), Query Frame = 1 

Query: 113  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV----------- 162
            +FPSHGKPFSLRLALS               SYLVKYLATNSY+PFITV           
Sbjct: 1624 HFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPK 1683

[Close]
BLAST of CmaCh04G019610 vs. NCBI nr
Match: gi|223535109|gb|EEF36790.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 89.0 bits (219), Expect = 9.2e-15
Identity = 84/216 (38.89%), Postives = 103/216 (47.69%), Query Frame = 1 

Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRA----YSELQTDCS-------------------GT 78
           F++SILFLLL+A YLVRTHLLFVSRA     +E +   S                     
Sbjct: 23  FLYSILFLLLVAGYLVRTHLLFVSRAYSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSE 82

Query: 79  IRRFFRRN-------RVGG---GGGSSASGGNMLWGGGPAYE----KDRHSLLIIRQSLI 138
           +  F+ +N       ++G        SASGGN LWGGGPAY     +     L I    +
Sbjct: 83  LNSFWLKNLFLVSLEQLGDFLEEMRGSASGGNKLWGGGPAYGVKSIRSEKKFLNINLIDL 142

Query: 139 HKPRVWL--------------IVCLNFPSHGKPFSLRLALSS-------GELDDP-SYLV 162
            K R++L              +   +FPSHGKPFSL LALS        G +    SYLV
Sbjct: 143 IKIRIFLTYYQTTTYSQTSCGVNSFHFPSHGKPFSLCLALSPSRGILVIGSIGTGRSYLV 202

[Close]
BLAST of CmaCh04G019610 vs. NCBI nr
Match: gi|763747790|gb|KJB15229.1| (hypothetical protein B456_002G166000 [Gossypium raimondii])

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 58/135 (42.96%), Postives = 71/135 (52.59%), Query Frame = 1 

Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNM 78
           F++SILFLLL+A YLVRTHLLFVSRAYSELQ +                           
Sbjct: 602 FLYSILFLLLVAGYLVRTHLLFVSRAYSELQIEFEKVKSLMI------------------ 661

Query: 79  LWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLALSSGELDDPSYL 138
                P+Y  + H  L   Q++ +          +FPS GKPFSLRLALS      PS  
Sbjct: 662 -----PSYMIELHIFLAHYQTITYSQTSCGANSFHFPSRGKPFSLRLALS------PSRG 707

Query: 139 VKYLATNSYLPFITV 154
           +  +ATNSY+PFITV
Sbjct: 722 ILVIATNSYVPFITV 707

[Close]
BLAST of CmaCh04G019610 vs. NCBI nr
Match: gi|139387489|ref|YP_001122842.1| (hypothetical protein RF2 [Phaseolus vulgaris])

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 47/109 (43.12%), Postives = 57/109 (52.29%), Query Frame = 1 

Query: 89   DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLAL---SSGEL------DDPSYLV 148
            +RH  L   Q++ +   +W     +FPSHGKPFSLRLAL   S G L         SYLV
Sbjct: 1580 ERHIFLANYQTITYSQTLWGANSFHFPSHGKPFSLRLALPPPSRGILVIGSIGTGRSYLV 1639

Query: 149  KYLATNSYLPFITV-----------------------ADDSEDIDRDLE 166
            KYLA NSY+PFITV                       +DDS+DIDRDL+
Sbjct: 1640 KYLAKNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDSDDSDDIDRDLD 1688

[Close]
BLAST of CmaCh04G019610 vs. NCBI nr
Match: gi|593269696|ref|XP_007136982.1| (hypothetical protein PHAVU_009G090300g, partial [Phaseolus vulgaris])

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 47/109 (43.12%), Postives = 57/109 (52.29%), Query Frame = 1 

Query: 89  DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLAL---SSGEL------DDPSYLV 148
           +RH  L   Q++ +   +W     +FPSHGKPFSLRLAL   S G L         SYLV
Sbjct: 12  ERHIFLANYQTITYSQTLWGANSFHFPSHGKPFSLRLALPPPSRGILVIGSIGTGRSYLV 71

Query: 149 KYLATNSYLPFITV-----------------------ADDSEDIDRDLE 166
           KYLA NSY+PFITV                       +DDS+DIDRDL+
Sbjct: 72  KYLAKNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDSDDSDDIDRDLD 120

[Close]
BLAST of CmaCh04G019610 vs. NCBI nr
Match: gi|593782223|ref|XP_007154152.1| (hypothetical protein PHAVU_003G094800g, partial [Phaseolus vulgaris])

HSP 1 Score: 72.4 bits (176), Expect = 8.9e-10
Identity = 47/108 (43.52%), Postives = 56/108 (51.85%), Query Frame = 1 

Query: 90  RHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLAL---SSGEL------DDPSYLVK 149
           RH  L   Q++ +   +W     +FPSHGKPFSLRLAL   S G L         SYLVK
Sbjct: 1   RHIFLANYQTITYSQTLWGANSFHFPSHGKPFSLRLALPPPSRGILVIGSIGTGRSYLVK 60

Query: 150 YLATNSYLPFITV-----------------------ADDSEDIDRDLE 166
           YLA NSY+PFITV                       +DDS+DIDRDL+
Sbjct: 61  YLAKNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDSDDSDDIDRDLD 108

The following BLAST results are available for this feature:
BLAST of CmaCh04G019610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YCF2_PHAVU3.3e-1243.12Protein Ycf2 OS=Phaseolus vulgaris GN=ycf2-A PE=3 SV=1[more]
YCF2_CUCSA3.6e-1142.34Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1[more]
YCF2_MORIN1.4e-1051.85Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1[more]
YCF2_SPIOL1.8e-1054.67Protein Ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 SV=2[more]
YCF2_PLAOC8.9e-1047.37Protein Ycf2 OS=Platanus occidentalis GN=ycf2-A PE=3 SV=1[more]
BLAST of CmaCh04G019610 vs. TrEMBL
Match NameE-valueIdentityDescription
B9SHW9_RICCO6.4e-1538.89Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0568360 PE=4 SV=1[more]
A0A0D2Q7J9_GOSRA1.6e-1342.96Uncharacterized protein OS=Gossypium raimondii GN=B456_002G166000 PE=4 SV=1[more]
V7AXL5_PHAVU3.6e-1043.12Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_009G090300g PE... [more]
V7CB97_PHAVU6.2e-1043.52Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_003G094800g PE... [more]
I2E2M0_VIGUN1.4e-0941.74Protein Ycf2 OS=Vigna unguiculata GN=ycf2 PE=3 SV=1[more]
BLAST of CmaCh04G019610 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00860.14.2e-1050.00ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core[more]
ATCG01280.14.2e-1050.00ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core[more]
BLAST of CmaCh04G019610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223535109|gb|EEF36790.1|9.2e-1538.89conserved hypothetical protein [Ricinus communis][more]
gi|763747790|gb|KJB15229.1|2.3e-1342.96hypothetical protein B456_002G166000 [Gossypium raimondii][more]
gi|139387489|ref|YP_001122842.1|5.2e-1043.12hypothetical protein RF2 [Phaseolus vulgaris][more]
gi|593269696|ref|XP_007136982.1|5.2e-1043.12hypothetical protein PHAVU_009G090300g, partial [Phaseolus vulgaris][more]
gi|593782223|ref|XP_007154152.1|8.9e-1043.52hypothetical protein PHAVU_003G094800g, partial [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008543Uncharacterised_Ycf2
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019610.1CmaCh04G019610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008543Uncharacterised protein family Ycf2PFAMPF05695DUF825coord: 16..52
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G019610CmaCh08G006480Cucurbita maxima (Rimu)cmacmaB550
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019610Watermelon (97103) v2cmawmbB726
CmaCh04G019610Cucurbita moschata (Rifu)cmacmoB679
CmaCh04G019610Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G019610Watermelon (Charleston Gray)cmawcgB622
CmaCh04G019610Watermelon (97103) v1cmawmB739
CmaCh04G019610Bottle gourd (USVL1VR-Ls)cmalsiB635
CmaCh04G019610Cucumber (Gy14) v2cgybcmaB670
CmaCh04G019610Melon (DHL92) v3.6.1cmamedB737