CmaCh04G019600 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019600
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 10981975 .. 10982710 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCACCCACTAGAATCTTTCGACTGGAACGAGAATCTTGATAACCTAAACAAAAATGCAGAAGTGAGCCTACTCCTCTCTCCCCCTTTTTTAGCCAACACCATCAACCCCATTCATTTTTCACCTTGAATGAGTCCCTAAAATCTCAGATAAATAGAAGGAAAGGAGATCAAAAAGATACGTGGACGACTTGACTCTCATATAGGTCGGTCGGATGTTTCCATGAACAGTAAGCAGCGGATCTCCCCTATTTTGGGAAAGCTGGTGGCTTGAATTCTTTCAAGGCAAGGGGCCTGATCGACATTCTTGTTTACTCTGATTCGGTCGAGGTGGTTTTCGTTTACCAGCGCATAGGTGGTCTAAGTTCCTATGACTGAGTCTTTCTGACCCCTGTGAACATCTTTTCTTAATGTATTAAAGAGGGCCTCTCTAACCGGTGAAAAGTGGTGGGTGTCCACTAATGGCCATTCCTGGCTCGGCTCCGATAATGCAATTCCGGTAGGAGTCGGTAGTTTGGCACTGGATCCCTTCGGACCTGGAGAACGTGGGACGCTGGGTCGGGGTTTGGTGAACCAACTAGTCGCTCCTCTCCTTTACAGTCGAGCTGCTTCTCTCCTATTGATTCTTGAACTCGGTAATATAGGGTTTTGATTGAATGAATTGACTCTCCTTCACCTTGTAAAGCGTCTTCGCTCCTCTAGTTTCAGTATGGGGCCCCTTTTTCGTTGCCTAG

mRNA sequence

ATGTTCCACCCACTAGAATCTTTCGACTGGAACGAGAATCTTGATAACCTAAACAAAAATGCAGAAGCAAGGGGCCTGATCGACATTCTTGTTTACTCTGATTCGGTCGAGGTGGTTTTCGTTTACCAGCGCATAGGAGTCGGTAGTTTGGCACTGGATCCCTTCGGACCTGGAGAACGTGGGACGCTGGGTCGGGGTTTGGTGAACCAACTAGTCGCTCCTCTCCTTTACAGTCGAGCTGCTTCTCTCCTATTGATTCTTGAACTCGTTTCAGTATGGGGCCCCTTTTTCGTTGCCTAG

Coding sequence (CDS)

ATGTTCCACCCACTAGAATCTTTCGACTGGAACGAGAATCTTGATAACCTAAACAAAAATGCAGAAGCAAGGGGCCTGATCGACATTCTTGTTTACTCTGATTCGGTCGAGGTGGTTTTCGTTTACCAGCGCATAGGAGTCGGTAGTTTGGCACTGGATCCCTTCGGACCTGGAGAACGTGGGACGCTGGGTCGGGGTTTGGTGAACCAACTAGTCGCTCCTCTCCTTTACAGTCGAGCTGCTTCTCTCCTATTGATTCTTGAACTCGTTTCAGTATGGGGCCCCTTTTTCGTTGCCTAG

Protein sequence

MFHPLESFDWNENLDNLNKNAEARGLIDILVYSDSVEVVFVYQRIGVGSLALDPFGPGERGTLGRGLVNQLVAPLLYSRAASLLLILELVSVWGPFFVA
Homology
[Close]
BLAST of CmaCh04G019600 vs. TrEMBL
Match: A0A151UEK1_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_048134 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-06
Identity = 34/52 (65.38%), Postives = 34/52 (65.38%), Query Frame = 1 

Query: 46 GVGSLALDPFGPGERGTLGRGLVNQLVAPLLYSRAASLLLILELVSVWGPFF 98
          GVGS ALDPFGPGER TLGRGLVNQLVAP              LV V GPFF
Sbjct: 20 GVGSWALDPFGPGERVTLGRGLVNQLVAP--------------LVEVSGPFF 57

[Close]
BLAST of CmaCh04G019600 vs. NCBI nr
Match: gi|1012366490|gb|KYP77671.1| (hypothetical protein KK1_048134, partial [Cajanus cajan])

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-06
Identity = 34/52 (65.38%), Postives = 34/52 (65.38%), Query Frame = 1 

Query: 46 GVGSLALDPFGPGERGTLGRGLVNQLVAPLLYSRAASLLLILELVSVWGPFF 98
          GVGS ALDPFGPGER TLGRGLVNQLVAP              LV V GPFF
Sbjct: 20 GVGSWALDPFGPGERVTLGRGLVNQLVAP--------------LVEVSGPFF 57

[Close]
BLAST of CmaCh04G019600 vs. NCBI nr
Match: gi|923634105|ref|XP_013751754.1| (PREDICTED: uncharacterized protein LOC106454124 [Brassica napus])

HSP 1 Score: 58.5 bits (140), Expect = 7.5e-06
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 1 

Query: 46 GVGSLALDPFGPGERGTLGRGLVNQLVAPLL 77
          GVGS ALDPFGPGER TLGRGLVNQLVAPL+
Sbjct: 33 GVGSWALDPFGPGERVTLGRGLVNQLVAPLV 63

The following BLAST results are available for this feature:
BLAST of CmaCh04G019600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G019600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151UEK1_CAJCA1.8e-0665.38Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_048134 PE=4 SV=1[more]
BLAST of CmaCh04G019600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G019600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012366490|gb|KYP77671.1|2.6e-0665.38hypothetical protein KK1_048134, partial [Cajanus cajan][more]
gi|923634105|ref|XP_013751754.1|7.5e-0690.32PREDICTED: uncharacterized protein LOC106454124 [Brassica napus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019600.1CmaCh04G019600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019600Melon (DHL92) v3.6.1cmamedB737
CmaCh04G019600Watermelon (97103) v2cmawmbB726
CmaCh04G019600Cucurbita maxima (Rimu)cmacmaB550
CmaCh04G019600Cucurbita moschata (Rifu)cmacmoB679
CmaCh04G019600Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G019600Watermelon (Charleston Gray)cmawcgB622
CmaCh04G019600Watermelon (97103) v1cmawmB739
CmaCh04G019600Bottle gourd (USVL1VR-Ls)cmalsiB635
CmaCh04G019600Cucumber (Gy14) v2cgybcmaB670