CmaCh04G019590 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019590
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCma_Chr04 : 10971203 .. 10971518 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATATTTCTTTCCACATACACGGATACGGAAATATGAAATTCAAACTCATGTGACAAGCCAGGGACCTGAAAGAATCACTAACGAAATCCCACATCTAGAAAGAAGCCCGCTTACTCCGGAATTGAGACAAAAATGAATGGAAGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCAGCGAATGCCCCCGAAGATAGATTATTATGA

mRNA sequence

ATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATATTTCTTTCCACATACACGGATACGGAAATATGAAATTCAAACTCATAAAGAAGCCCGCTTACTCCGGAATTGAGACAAAAATGAATGGAAGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCAGCGAATGCCCCCGAAGATAGATTATTATGA

Coding sequence (CDS)

ATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTAATTAGCGAGCGTCTGGTATATGAAGATATTTATATTTCTTTCCACATACACGGATACGGAAATATGAAATTCAAACTCATAAAGAAGCCCGCTTACTCCGGAATTGAGACAAAAATGAATGGAAGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCAGCGAATGCCCCCGAAGATAGATTATTATGA

Protein sequence

MPWEGYNSEDAVLISERLVYEDIYISFHIHGYGNMKFKLIKKPAYSGIETKMNGRNCDAGIVGGDGRVGKLTPQMAKESANAPEDRLL
Homology
[Close]
BLAST of CmaCh04G019590 vs. Swiss-Prot
Match: RPOB_SAPOF (DNA-directed RNA polymerase subunit beta (Fragment) OS=Saponaria officinalis GN=rpoB PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-18
Identity = 58/100 (58.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHIHGYGNMKFKLIKKPAYSGIETKMNG----RN 60
           MPWEGYN EDAVLISERLVYEDIY SFHI  Y    +   + P     E         RN
Sbjct: 102 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTYVTSQGPERVTSEIPHLEAHLLRN 161

Query: 61  CDA-GIVG-------GDGRVGKLTPQMAKESANAPEDRLL 89
            D  GIVG       GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 162 LDKNGIVGLGSWVETGDILVGKLTPQMAKESSYAPEDRLL 201

[Close]
BLAST of CmaCh04G019590 vs. Swiss-Prot
Match: RPOB_LOTJA (DNA-directed RNA polymerase subunit beta OS=Lotus japonicus GN=rpoB PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.5e-18
Identity = 54/100 (54.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHIHGY-------GNMKFKLIKKPAYSGIETKMN 60
           MPWEGYNSEDAVLIS+RLVYEDIY SFHI  Y        N   ++  K  +  +    N
Sbjct: 660 MPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRN 719

Query: 61  GRNCDAGIVG-----GDGRVGKLTPQMAKESANAPEDRLL 89
                  I+G     GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 720 LDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLL 759

[Close]
BLAST of CmaCh04G019590 vs. Swiss-Prot
Match: RPOB_SILLA (DNA-directed RNA polymerase subunit beta OS=Silene latifolia GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-17
Identity = 57/100 (57.00%), Postives = 60/100 (60.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHIHGYGNMKFKLIKKPAYSGIETKMNG----RN 60
           MPWEGYN EDAVLISERLVYEDIY SFHI  Y    +   + P     E         RN
Sbjct: 660 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYDIQTYVTSQGPERVTSEIPHLEAHLLRN 719

Query: 61  CDA-GIV-------GGDGRVGKLTPQMAKESANAPEDRLL 89
            D  GIV        GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 720 LDKNGIVRLGSWVETGDILVGKLTPQMAKESSYAPEDRLL 759

[Close]
BLAST of CmaCh04G019590 vs. Swiss-Prot
Match: RPOB_MORIN (DNA-directed RNA polymerase subunit beta OS=Morus indica GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-17
Identity = 58/105 (55.24%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHIHGYGNMKFKLIKKPAYSGIETKMNG------ 60
           MPWEGYNSEDAVLI+ERLVYEDIY SFHI      K+++       G E   N       
Sbjct: 660 MPWEGYNSEDAVLINERLVYEDIYTSFHIR-----KYEIHTHVTSHGPERITNEIPHLEA 719

Query: 61  ---RNCDA-GIV-------GGDGRVGKLTPQMAKESANAPEDRLL 89
              RN D  GIV        GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 720 HLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLL 759

[Close]
BLAST of CmaCh04G019590 vs. Swiss-Prot
Match: RPOB_SPIOL (DNA-directed RNA polymerase subunit beta OS=Spinacia oleracea GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-17
Identity = 57/100 (57.00%), Postives = 60/100 (60.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHIHGYGNMKFKLIKKPAYSGIETKMNG----RN 60
           MPWEGYN EDAVLISERLVYEDIY SFHI  Y    +   + P     E         RN
Sbjct: 660 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRN 719

Query: 61  CDA-GIV-------GGDGRVGKLTPQMAKESANAPEDRLL 89
            D  GIV        GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 720 LDKNGIVRLGSWVETGDILVGKLTPQMAKESSYAPEDRLL 759

[Close]
BLAST of CmaCh04G019590 vs. TrEMBL
Match: A0A0F6NF47_LATPA (DNA-directed RNA polymerase subunit beta OS=Lathyrus palustris GN=rpoB PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-16
Identity = 56/100 (56.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHI-----------HGYGNMKFKLIKKPAYSGIE 60
           MPWEGYNSEDAVLISERLVYEDIY SFHI           HG   +  K+    AY    
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAYLLRN 719

Query: 61  TKMNG-RNCDAGIVGGDGRVGKLTPQMAKESANAPEDRLL 89
              NG     + +  GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 720 LDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLL 759

[Close]
BLAST of CmaCh04G019590 vs. TrEMBL
Match: A0A0F6NEM5_LATJP (DNA-directed RNA polymerase subunit beta OS=Lathyrus japonicus GN=rpoB PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-16
Identity = 56/100 (56.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHI-----------HGYGNMKFKLIKKPAYSGIE 60
           MPWEGYNSEDAVLISERLVYEDIY SFHI           HG   +  K+    AY    
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAYLLRN 719

Query: 61  TKMNG-RNCDAGIVGGDGRVGKLTPQMAKESANAPEDRLL 89
              NG     + +  GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 720 LDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLL 759

[Close]
BLAST of CmaCh04G019590 vs. TrEMBL
Match: A0A0F6NEU1_LATJP (DNA-directed RNA polymerase subunit beta OS=Lathyrus japonicus GN=rpoB PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-16
Identity = 56/100 (56.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHI-----------HGYGNMKFKLIKKPAYSGIE 60
           MPWEGYNSEDAVLISERLVYEDIY SFHI           HG   +  K+    AY    
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAYLLRN 719

Query: 61  TKMNG-RNCDAGIVGGDGRVGKLTPQMAKESANAPEDRLL 89
              NG     + +  GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 720 LDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLL 759

[Close]
BLAST of CmaCh04G019590 vs. TrEMBL
Match: A0A0F6NF16_LATLI (DNA-directed RNA polymerase subunit beta OS=Lathyrus littoralis GN=rpoB PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-16
Identity = 56/100 (56.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHI-----------HGYGNMKFKLIKKPAYSGIE 60
           MPWEGYNSEDAVLISERLVYEDIY SFHI           HG   +  K+    AY    
Sbjct: 661 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAYLLRN 720

Query: 61  TKMNG-RNCDAGIVGGDGRVGKLTPQMAKESANAPEDRLL 89
              NG     + +  GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 721 LDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLL 760

[Close]
BLAST of CmaCh04G019590 vs. TrEMBL
Match: R4PSM3_UTRGI (DNA-directed RNA polymerase subunit beta OS=Utricularia gibba GN=rpoB PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-16
Identity = 58/101 (57.43%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHIHGYGNMKFKLIKKP-----AYSGIETKMNGR 60
           MPWEGYNSEDAVLISERLVYEDIY SFHI  Y        + P         +ET +  R
Sbjct: 669 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNKIPHLETHLL-R 728

Query: 61  NCDA-GIV-------GGDGRVGKLTPQMAKESANAPEDRLL 89
           N D  GIV        GD  VGKLTPQM KES+ APEDRLL
Sbjct: 729 NLDKNGIVMLGSWVEAGDILVGKLTPQMVKESSYAPEDRLL 768

[Close]
BLAST of CmaCh04G019590 vs. TAIR10
Match: ATCG00190.1 (ATCG00190.1 RNA polymerase subunit beta)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-16
Identity = 55/100 (55.00%), Postives = 59/100 (59.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHIHGYGNMKFKLIKKPAYSGIE-TKMNG---RN 60
           MPWEGYN EDAVLISE LVY DIY SFHI  Y        + P     E   + G   RN
Sbjct: 662 MPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRN 721

Query: 61  CDA-GIV-------GGDGRVGKLTPQMAKESANAPEDRLL 89
            D  GIV        GD  VGKLTPQ+AKES+ APEDRLL
Sbjct: 722 LDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLL 761

[Close]
BLAST of CmaCh04G019590 vs. NCBI nr
Match: gi|133420|sp|P08036.1|RPOB_SAPOF (RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta; Short=RNA polymerase subunit beta)

HSP 1 Score: 92.0 bits (227), Expect = 5.4e-16
Identity = 58/100 (58.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHIHGYGNMKFKLIKKPAYSGIETKMNG----RN 60
           MPWEGYN EDAVLISERLVYEDIY SFHI  Y    +   + P     E         RN
Sbjct: 102 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTYVTSQGPERVTSEIPHLEAHLLRN 161

Query: 61  CDA-GIVG-------GDGRVGKLTPQMAKESANAPEDRLL 89
            D  GIVG       GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 162 LDKNGIVGLGSWVETGDILVGKLTPQMAKESSYAPEDRLL 201

[Close]
BLAST of CmaCh04G019590 vs. NCBI nr
Match: gi|821317455|ref|YP_009138536.1| (RNA polymerase beta subunit (chloroplast) [Lathyrus japonicus])

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 56/100 (56.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHI-----------HGYGNMKFKLIKKPAYSGIE 60
           MPWEGYNSEDAVLISERLVYEDIY SFHI           HG   +  K+    AY    
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAYLLRN 719

Query: 61  TKMNG-RNCDAGIVGGDGRVGKLTPQMAKESANAPEDRLL 89
              NG     + +  GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 720 LDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLL 759

[Close]
BLAST of CmaCh04G019590 vs. NCBI nr
Match: gi|821317531|ref|YP_009138611.1| (RNA polymerase beta subunit (chloroplast) [Lathyrus littoralis])

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 56/100 (56.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHI-----------HGYGNMKFKLIKKPAYSGIE 60
           MPWEGYNSEDAVLISERLVYEDIY SFHI           HG   +  K+    AY    
Sbjct: 661 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAYLLRN 720

Query: 61  TKMNG-RNCDAGIVGGDGRVGKLTPQMAKESANAPEDRLL 89
              NG     + +  GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 721 LDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLL 760

[Close]
BLAST of CmaCh04G019590 vs. NCBI nr
Match: gi|672919621|gb|AIK20830.1| (RNA polymerase beta subunit (chloroplast) [Lathyrus japonicus])

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 56/100 (56.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHI-----------HGYGNMKFKLIKKPAYSGIE 60
           MPWEGYNSEDAVLISERLVYEDIY SFHI           HG   +  K+    AY    
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAYLLRN 719

Query: 61  TKMNG-RNCDAGIVGGDGRVGKLTPQMAKESANAPEDRLL 89
              NG     + +  GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 720 LDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLL 759

[Close]
BLAST of CmaCh04G019590 vs. NCBI nr
Match: gi|821318826|ref|YP_009138790.1| (RNA polymerase beta subunit (chloroplast) [Lathyrus palustris])

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 56/100 (56.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYISFHI-----------HGYGNMKFKLIKKPAYSGIE 60
           MPWEGYNSEDAVLISERLVYEDIY SFHI           HG   +  K+    AY    
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAYLLRN 719

Query: 61  TKMNG-RNCDAGIVGGDGRVGKLTPQMAKESANAPEDRLL 89
              NG     + +  GD  VGKLTPQMAKES+ APEDRLL
Sbjct: 720 LDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLL 759

The following BLAST results are available for this feature:
BLAST of CmaCh04G019590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOB_SAPOF3.4e-1858.00DNA-directed RNA polymerase subunit beta (Fragment) OS=Saponaria officinalis GN=... [more]
RPOB_LOTJA7.5e-1854.00DNA-directed RNA polymerase subunit beta OS=Lotus japonicus GN=rpoB PE=3 SV=1[more]
RPOB_SILLA2.2e-1757.00DNA-directed RNA polymerase subunit beta OS=Silene latifolia GN=rpoB PE=3 SV=1[more]
RPOB_MORIN2.9e-1755.24DNA-directed RNA polymerase subunit beta OS=Morus indica GN=rpoB PE=3 SV=1[more]
RPOB_SPIOL2.9e-1757.00DNA-directed RNA polymerase subunit beta OS=Spinacia oleracea GN=rpoB PE=3 SV=1[more]
BLAST of CmaCh04G019590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0F6NF47_LATPA4.9e-1656.00DNA-directed RNA polymerase subunit beta OS=Lathyrus palustris GN=rpoB PE=3 SV=1[more]
A0A0F6NEM5_LATJP4.9e-1656.00DNA-directed RNA polymerase subunit beta OS=Lathyrus japonicus GN=rpoB PE=3 SV=1[more]
A0A0F6NEU1_LATJP4.9e-1656.00DNA-directed RNA polymerase subunit beta OS=Lathyrus japonicus GN=rpoB PE=3 SV=1[more]
A0A0F6NF16_LATLI4.9e-1656.00DNA-directed RNA polymerase subunit beta OS=Lathyrus littoralis GN=rpoB PE=3 SV=... [more]
R4PSM3_UTRGI6.4e-1657.43DNA-directed RNA polymerase subunit beta OS=Utricularia gibba GN=rpoB PE=3 SV=1[more]
BLAST of CmaCh04G019590 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00190.12.6e-1655.00ATCG00190.1 RNA polymerase subunit beta[more]
BLAST of CmaCh04G019590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|133420|sp|P08036.1|RPOB_SAPOF5.4e-1658.00RecName: Full=DNA-directed RNA polymerase subunit beta; AltName: Full=PEP; AltNa... [more]
gi|821317455|ref|YP_009138536.1|7.1e-1656.00RNA polymerase beta subunit (chloroplast) [Lathyrus japonicus][more]
gi|821317531|ref|YP_009138611.1|7.1e-1656.00RNA polymerase beta subunit (chloroplast) [Lathyrus littoralis][more]
gi|672919621|gb|AIK20830.1|7.1e-1656.00RNA polymerase beta subunit (chloroplast) [Lathyrus japonicus][more]
gi|821318826|ref|YP_009138790.1|7.1e-1656.00RNA polymerase beta subunit (chloroplast) [Lathyrus palustris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007120DNA-dir_RNAP_su2_dom
IPR015712DNA-dir_RNA_pol_su2
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO:0032549ribonucleoside binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019590.1CmaCh04G019590.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6GENE3DG3DSA:2.40.270.10coord: 1..63
score: 7.
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6PFAMPF00562RNA_pol_Rpb2_6coord: 1..33
score: 3.
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..32
score: 2.0
NoneNo IPR availablePANTHERPTHR20856:SF20DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 1..32
score: 2.0
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..85
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G019590CmaCh08G006500Cucurbita maxima (Rimu)cmacmaB550
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019590Cucurbita moschata (Rifu)cmacmoB679
CmaCh04G019590Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G019590Watermelon (Charleston Gray)cmawcgB622
CmaCh04G019590Watermelon (97103) v1cmawmB739
CmaCh04G019590Bottle gourd (USVL1VR-Ls)cmalsiB635
CmaCh04G019590Cucumber (Gy14) v2cgybcmaB670
CmaCh04G019590Melon (DHL92) v3.6.1cmamedB737
CmaCh04G019590Watermelon (97103) v2cmawmbB726