CmaCh04G019580 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G019580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerase subunit beta
Location	Cma_Chr04 : 10968829 .. 10971110 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCAGAAATCAGGGAAGGGGGTTCGAGTGAGAATCCAGATATGATTCGTGTATCTATTTCACAGAAATGGGAAGGAAATCAAAGTAGGCGATAAGGTAGCGGGAAGACATGGAAATCAAGGTATTCTTTCACAAATGGTGCCTAGAGAAGATATGTCTTATTTGCAGAAGACCAGTTGATATGGTTTGAAATCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAAATATTTGTTTGAGTACTCACTCGGCCGGGTGGTTAGCGGGGAGTTTTCTAGATAGACATTATCTCATAGTACCTTTTGTTTGATGAGAGATATGAACAAGTGGCTTCTAGAAAACAACTAGTCTTTTCTTTCCTCATTCTATGAAGCCAGTAAGCAAACAGCGAGTCCATAGGTATTTGAACCCTAGTATCCGGGAAAAAGCAGATTGATGGAAGAACGGGAAATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATGAATGAATCAAGTTGATGTTAATACACAGACGTTCGTTCCTGTGGACATTATGTACTTGTTACACAACAACCCCTTATAGGAAGGGCCAAGCAAGGCAGACAACGGGTGGAAGAAATGGAGGTTTGGGCTCTAGAAGGATTTGGTGTTGATTTTATTTGACAAGAGATGCTTACTTATCAATCTAATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACGATCATTGGAGGAAGAATACCTAAACCTGAGGATACTCCAAAATCTTTTCAATTCCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACGGAATAATTTCCTTGTATCTGAGAATAACTTCTAGATTAAGAGGAAGGAAGCTTAATCAAAATGAATCAGACAATTTGTTCTATGATCGATAGGTATAAACATAACTCCGAATGAATTGGATTAGTTTCTCCTCAACAAATAAGTTTAGTGCTTGGGCCAATAAAACCCTAGCTAATGTCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTCTTTTCATTACAAAACGAATAAACCTGAAATGGATTATTTTGTGAAAGACTTTTCGGGCCTATAAAAAGGGGGATTTGTGCTTGTGGAATTTCTTGAGTAATCGGAGAAAGAAGATTCGCGGTGAACAATGCGTAGTCTAATTTGTTGGTTGATTCTCAGATACGAAGAAATGGGCTTTATTAAACAAGCTGGCATGCCCAGTAACCCATGTGTGGTGTTTGAAACGTCTTCCTAGTTATATCGGGAATCCTTTAGCTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGTGTGATTTGATGTTGATTTTACGTATTCCCAATGAGAAACAGTCATCCCATTCATTCAATCTCATTGGGATGCCCCGGATCTGATATGTGGCTTGCTTGGTAGGATTACCATGAAGCTTAGAATTGTGAGTGTAGTCAATACTCCCATCCCAAATCAAAGGGGAATTAGTCTATGGTCGATTCAGTAATAAATAGGAATTATCAGTTCTACCTCGTGAAAGAAAACAGATTTCTTTTGTGTAATTAACCGTTTCTTTTTCTTTCATAAATTATGCTACAATAAGCAATTCATGGTGAAAGGAGTCTATCCATCGCATATAGGCTTTAAGGACATCGTGGCATAACTGTCGAGGTGAATGAAGTAGGGCCCTAACTAAAAGATCGAATGGAACGGTACAAAGACAAGTAAATCAATCCCTTATTCCAAGGGACTCCTTATTAATTTGAATTAAGGGGATTCATCATTCCAAGGGAAATAAACTACTCAGAAATTGCACATTTCTTTTGTTTCCATTGTAATTGATATAAAGAACTCAGTCAACATTTAAATCACAAAGTCAAAGAATCCATGAAATGTTGTTTGGTCTTAATTGAGAACTTGAGTAAAGAGTAGTTGGGGGTTTTATAGAAGTTGTTGGATAGTGGGAACTCCTTTATTTGATGTAACTACTTGAGCTGAGTGGGATGAAAAGAAACTTTCACGTCCGATTTGGAAAGGGGGAGATCCTATAGTATCCTATATTTGTCTTTTGCTAGGCCCATAGCTAAAAACCCTACTTTCGTACGATCACGGGGTTCATTCGAATATGAAATCCAATCCGGGAAATACAGCATCCCACTTTTTGTGACTACCCAAGGCTTGCTTCGATACATTTCGAAATCAAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGTCGATCCGAATTTGCGACTTATTAG

mRNA sequence

ATGGATCCAGAAATCAGGGAAGGGGGTTCGAGTGAGAATCCAGATATGATTCGTGAAATCAAAGTAGGCGATAAGGTAGCGGGAAGACATGGAAATCAAGGTATTCTTTCACAAATGGTGCCTAGAGAAGATATGTCTTATTTGCAGAAGACCAACGTTCGTTCCTGTGGACATTATGTACTTGTTACACAACAACCCCTTATAGGAAGGGCCAAGCAAGGCAGACAACGGGTGGAAGAAATGGAGAGATGCTTACTTATCAATCTAATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACGATCATTGGAGGAAGAATACCTAAACCTGAGGATACTCCAAAATCTTTTCAATTCCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACGGAATAATTTCCTTGTATCTGAGAATAACTTCTAGATTAAGAGGAAGGAAGCTTAATCAAAATGAATCAGACAATTTGCCCATAGCTAAAAACCCTACTTTCGTACGATCACGGGGTTCATTCGAATATGAAATCCAATCCGGGAAATACAGCATCCCACTTTTTGTGACTACCCAAGGCTTGCTTCGATACATTTCGAAATCAAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGTCGATCCGAATTTGCGACTTATTAG

Coding sequence (CDS)

ATGGATCCAGAAATCAGGGAAGGGGGTTCGAGTGAGAATCCAGATATGATTCGTGAAATCAAAGTAGGCGATAAGGTAGCGGGAAGACATGGAAATCAAGGTATTCTTTCACAAATGGTGCCTAGAGAAGATATGTCTTATTTGCAGAAGACCAACGTTCGTTCCTGTGGACATTATGTACTTGTTACACAACAACCCCTTATAGGAAGGGCCAAGCAAGGCAGACAACGGGTGGAAGAAATGGAGAGATGCTTACTTATCAATCTAATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACGATCATTGGAGGAAGAATACCTAAACCTGAGGATACTCCAAAATCTTTTCAATTCCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACGGAATAATTTCCTTGTATCTGAGAATAACTTCTAGATTAAGAGGAAGGAAGCTTAATCAAAATGAATCAGACAATTTGCCCATAGCTAAAAACCCTACTTTCGTACGATCACGGGGTTCATTCGAATATGAAATCCAATCCGGGAAATACAGCATCCCACTTTTTGTGACTACCCAAGGCTTGCTTCGATACATTTCGAAATCAAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGTCGATCCGAATTTGCGACTTATTAG

Protein sequence

MDPEIREGGSSENPDMIREIKVGDKVAGRHGNQGILSQMVPREDMSYLQKTNVRSCGHYVLVTQQPLIGRAKQGRQRVEEMERCLLINLIILELGKKYLVLRSLEEEYLNLRILQNLFNSSFENYDLWLWNGIISLYLRITSRLRGRKLNQNESDNLPIAKNPTFVRSRGSFEYEIQSGKYSIPLFVTTQGLLRYISKSRNFYRSRCYTRTISRSEFATY

Homology

[Close]

BLAST of CmaCh04G019580 vs. Swiss-Prot
Match: RPOB_IPOPU (DNA-directed RNA polymerase subunit beta OS=Ipomoea purpurea GN=rpoB PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PR+DM YLQ
Sbjct: 790 KKGGSSYNPEMIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQ 840

[Close]

BLAST of CmaCh04G019580 vs. Swiss-Prot
Match: RPOB_LIRTU (DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera GN=rpoB PE=3 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PR+DM YLQ
Sbjct: 793 KKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQ 843

[Close]

BLAST of CmaCh04G019580 vs. Swiss-Prot
Match: RPOB_PANGI (DNA-directed RNA polymerase subunit beta OS=Panax ginseng GN=rpoB PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           + GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PR+DM YLQ
Sbjct: 794 KRGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQ 844

[Close]

BLAST of CmaCh04G019580 vs. Swiss-Prot
Match: RPOB_DRIGR (DNA-directed RNA polymerase subunit beta OS=Drimys granadensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-10
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 8   GGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PR+DM YLQ
Sbjct: 796 GGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQ 844

[Close]

BLAST of CmaCh04G019580 vs. Swiss-Prot
Match: RPOB_NASOF (DNA-directed RNA polymerase subunit beta OS=Nasturtium officinale GN=rpoB PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-10
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP++IR       EIKVGDKVAGRHGN+GI+S+++PR+DM YLQ
Sbjct: 795 KKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQ 845

[Close]

BLAST of CmaCh04G019580 vs. TrEMBL
Match: A0A0K0VIK2_9LILI (DNA-directed RNA polymerase subunit beta OS=Stichoneuron caudatum GN=rpoB PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+SQ++PR+DM YLQ
Sbjct: 790 KKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISQILPRQDMPYLQ 840

[Close]

BLAST of CmaCh04G019580 vs. TrEMBL
Match: E5KU88_CORLA (DNA-directed RNA polymerase subunit beta OS=Corynocarpus laevigatus GN=rpoB PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.5e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PREDM YLQ
Sbjct: 793 KKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQ 843

[Close]

BLAST of CmaCh04G019580 vs. TrEMBL
Match: A0A109WXU0_GYNPE (DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum GN=rpoB PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.5e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PREDM YLQ
Sbjct: 793 KKGGSSYNPEMIRIYISQKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQ 843

[Close]

BLAST of CmaCh04G019580 vs. TrEMBL
Match: A0A0U1SGE8_9MAGN (DNA-directed RNA polymerase subunit beta OS=Magnolia cathcartii GN=rpoB PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PR+DM YLQ
Sbjct: 802 KKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQ 852

[Close]

BLAST of CmaCh04G019580 vs. TrEMBL
Match: A0A161BXE2_COLAT (DNA-directed RNA polymerase beta chain OS=Colchicum autumnale GN=rpoB PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PR+DM YLQ
Sbjct: 793 KKGGSSYNPEMIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQ 843

[Close]

BLAST of CmaCh04G019580 vs. TAIR10
Match: ATCG00190.1 (ATCG00190.1 RNA polymerase subunit beta)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-11
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP++IR       EIKVGDKVAGRHGN+GI+S+++PR+DM YLQ
Sbjct: 795 KKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQ 845

[Close]

BLAST of CmaCh04G019580 vs. TAIR10
Match: ATCG00180.1 (ATCG00180.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-10
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1


Query: 158 PIAKNPTFVRSRGSFEYEIQSGKYSIPLFVTTQG 192
           PI K PTF+R RGSFEYEIQS KYSIPLF TTQG
Sbjct: 150 PITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQG 183

[Close]

BLAST of CmaCh04G019580 vs. NCBI nr
Match: gi|902574696|gb|AKR81005.1| (RNA polymerase beta subunit (plastid) [Stichoneuron caudatum])

HSP 1 Score: 70.1 bits (170), Expect = 5.5e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+SQ++PR+DM YLQ
Sbjct: 790 KKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISQILPRQDMPYLQ 840

[Close]

BLAST of CmaCh04G019580 vs. NCBI nr
Match: gi|1002166155|ref|YP_009236272.1| (RNA polymerase beta subunit (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 69.3 bits (168), Expect = 9.4e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PREDM YLQ
Sbjct: 793 KKGGSSYNPEMIRIYISQKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQ 843

[Close]

BLAST of CmaCh04G019580 vs. NCBI nr
Match: gi|317046165|ref|YP_004072454.1| (RNA polymerase beta subunit [Corynocarpus laevigata])

HSP 1 Score: 69.3 bits (168), Expect = 9.4e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PREDM YLQ
Sbjct: 793 KKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQ 843

[Close]

BLAST of CmaCh04G019580 vs. NCBI nr
Match: gi|937634978|gb|ALI91069.1| (RpoB, partial (chloroplast) [Garrya flavescens])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PR+DM YLQ
Sbjct: 793 KKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQ 843

[Close]

BLAST of CmaCh04G019580 vs. NCBI nr
Match: gi|1021079456|ref|YP_009249198.1| (RNA polymerase beta subunit (plastid) [Areca vestiaria])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6   REGGSSENPDMIR-------EIKVGDKVAGRHGNQGILSQMVPREDMSYLQ 50
           ++GGSS NP+MIR       EIKVGDKVAGRHGN+GI+S+++PR+DM YLQ
Sbjct: 791 KKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQ 841

The following BLAST results are available for this feature:

BLAST of CmaCh04G019580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPOB_IPOPU	1.0e-10	64.71	DNA-directed RNA polymerase subunit beta OS=Ipomoea purpurea GN=rpoB PE=3 SV=1	[more]
RPOB_LIRTU	1.0e-10	64.71	DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera GN=rpoB PE=3...	[more]
RPOB_PANGI	1.3e-10	64.71	DNA-directed RNA polymerase subunit beta OS=Panax ginseng GN=rpoB PE=3 SV=1	[more]
RPOB_DRIGR	2.2e-10	67.35	DNA-directed RNA polymerase subunit beta OS=Drimys granadensis GN=rpoB PE=3 SV=1	[more]
RPOB_NASOF	2.9e-10	62.75	DNA-directed RNA polymerase subunit beta OS=Nasturtium officinale GN=rpoB PE=3 S...	[more]

BLAST of CmaCh04G019580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0K0VIK2_9LILI	3.8e-09	66.67	DNA-directed RNA polymerase subunit beta OS=Stichoneuron caudatum GN=rpoB PE=3 S...	[more]
E5KU88_CORLA	6.5e-09	66.67	DNA-directed RNA polymerase subunit beta OS=Corynocarpus laevigatus GN=rpoB PE=3...	[more]
A0A109WXU0_GYNPE	6.5e-09	66.67	DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum GN=rpoB PE=3...	[more]
A0A0U1SGE8_9MAGN	1.1e-08	64.71	DNA-directed RNA polymerase subunit beta OS=Magnolia cathcartii GN=rpoB PE=3 SV=...	[more]
A0A161BXE2_COLAT	1.1e-08	64.71	DNA-directed RNA polymerase beta chain OS=Colchicum autumnale GN=rpoB PE=4 SV=1	[more]

BLAST of CmaCh04G019580 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00190.1	1.6e-11	62.75	ATCG00190.1 RNA polymerase subunit beta	[more]
ATCG00180.1	6.9e-10	82.35	ATCG00180.1 DNA-directed RNA polymerase family protein	[more]

BLAST of CmaCh04G019580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|902574696\|gb\|AKR81005.1\|	5.5e-09	66.67	RNA polymerase beta subunit (plastid) [Stichoneuron caudatum]	[more]
gi\|1002166155\|ref\|YP_009236272.1\|	9.4e-09	66.67	RNA polymerase beta subunit (chloroplast) [Gynostemma pentaphyllum]	[more]
gi\|317046165\|ref\|YP_004072454.1\|	9.4e-09	66.67	RNA polymerase beta subunit [Corynocarpus laevigata]	[more]
gi\|937634978\|gb\|ALI91069.1\|	1.6e-08	64.71	RpoB, partial (chloroplast) [Garrya flavescens]	[more]
gi\|1021079456\|ref\|YP_009249198.1\|	1.6e-08	64.71	RNA polymerase beta subunit (plastid) [Areca vestiaria]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007120	DNA-dir_RNAP_su2_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019580.1	CmaCh04G019580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007120	DNA-directed RNA polymerase, subunit 2, domain 6	GENE3D	G3DSA:2.40.270.10		coord: 18..50 score: 1.5
IPR007120	DNA-directed RNA polymerase, subunit 2, domain 6	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 17..50 score: 1.3
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 17..84 score: 2.69

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G019580	CmaCh08G006510	Cucurbita maxima (Rimu)	cmacmaB550

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G019580	Cucurbita moschata (Rifu)	cmacmoB679
CmaCh04G019580	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G019580	Watermelon (Charleston Gray)	cmawcgB622
CmaCh04G019580	Watermelon (97103) v1	cmawmB739
CmaCh04G019580	Bottle gourd (USVL1VR-Ls)	cmalsiB635
CmaCh04G019580	Cucumber (Gy14) v2	cgybcmaB670
CmaCh04G019580	Melon (DHL92) v3.6.1	cmamedB737
CmaCh04G019580	Watermelon (97103) v2	cmawmbB726