CmaCh04G019570 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G019570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerase subunit beta'
Location	Cma_Chr04 : 10966971 .. 10968676 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTTTGATGTCTGTCTATTACCTGTTCTGTTCTTCCTCCCAAGGTGAAACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTAGAGAGGAGTTATCCATCGGGGAACAATACTCTTCCTTATTGATCTATTAACAAGTAGATCTACGCCTGGAGGGAGAATTAGTAATGTGTCAGGCAGGAGAAATTGCTAGAAGAAGCCGTGGATACACTGATTGATAATGGAATCTGTGGACAACCAATGAGGGATGGCCATAATAAAGGTTACAAGTCGTTTTCCGATGTAATTGTAATTGAAGGAAAAGCAAAGACGGAAGATTTCTTTCGGGAAGGAAACTCTGCTTGGCAAACGGGTCGATTATTTAGGACGTTCTGTGATTGTTGTTGGTCCCTCACTTTCATTACATGGGGATTGCCTCGTGAAATCGCAATAGAGCTTTTCCAGACATTTTTCTTCGAACATAGAAGTTGCTAAGAGTCAAATTCGGGAAAAAGAACCCATTCTATGGGAAAGACTGAAGGAAGTTATGCAGGCAGGGGAGGGGCATCCCGTATTGCTAAATAGAGCGCCCACTTTCTTTGCATAGATTAGGCATCCAGGCCTTCTAACCTATTTGAGTGGAAGGACGTACTATTTGTTTATATCCATTAGTTTGTAATGTAAGGGATTCAATGCAGACTTTGATGGGGCTGGCTGTTCATGTACCTTTTCTCGTTCGAGGCTCAAGTAGAGGCAGGCGCGTTTACTTATGTTTTCTCATCTGAATCTCTTGTCTTCAGCTATTGGGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAAAGAGCGGGAATCGCCTAGGTATTTGTGCAAATCGGTATAATCCATGTAATTGCAAAAAGAATACAAATGACAAAATGGTCAATAATAAATAACTATAAATATACGAAAGAACCCTCTTTTTGTAATTCCTCTAATGCAATTGGAGCTTATCACCAGAAAAGTAGATAGTCCTTTGTGCCTGGCTCGGAGACTAGATCAACGCGTTATTGCTTCACTTCAAGAGAAGCTCCTATGGAAGTTCACTATGAATGGGTACCCATCATGAGATTTACGGGTACTATCTAATAGTCAAAAGTCTCAAAAAAGCAATTCTTTGTATATACATAGATTCAAACCCCTGTTGGTCATAGTTCTCTTTATCTAGAAATCGAAGGAAGAGGCTGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACGTAATCCTCTAGTATCTCACTCAGCTAAGCTAAGTAATTAATTATTATATGACGCGGGTATGCATTTTCTTCTCCCGGTTCAACTACGCCCATAGGTCTTGAATTTCTACGCGAATCAAGATGGAGAAAAGGAAGTTTTCCAATCAATCAGTGACTCAAACCTCAACCCTATCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGGCCGATCTGGTCTTTCACAATAAAGTGAGTGATAGATGGAACTGCCACAACTTATTAGCGGATTAATAGATCACTCCGGAATGGCATATACATCACACATCCTGGCCTGGATCAAATAAAGACTTTGTGGTTCCAGCGGGCCACTGCTACATCCATTTCATTAGGAATTGCTGATCTTTTCACAATCCCTTCCTTCTGA

mRNA sequence

ATGGATGGTTTGATGTCTGTCTATTACCTGTTCTGTTCTTCCTCCCAAGGTGAAACCGATCATTCAGATAGATGGGGGCAGGAGAAATTGCTAGAAGAAGCCGTGGATACACTGATTGATAATGGAATCTGTGGACAACCAATGAGGGATGGCCATAATAAAGGTTACAAGTCGTTTTCCGATGTAATTGTAATTGAAGGAAAAGCAAAGACGGAAGATTTCTTTCGGGAAGGAAACTCTGCTTGGCAAACGGTTTGTAATGTAAGGGATTCAATGCAGACTTTGATGGGGCTGGCTGTTCATGTACCTTTTCTCGTTCGAGGCTCAAGTAGAGGCAGGCGCCTATTGGGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAAAGAGCGGGAATCGCCTAGGTATTTGTGCAAATCGAACCCTCTTTTTGTAATTCCTCTAATGCAATTGGAGCTTATCACCAGAAAAGTAGATAGTCCTTTGTGCCTGGCTCGGAGACTAGATCAACGCATTCAAACCCCTGTTGGTCATAGTTCTCTTTATCTAGAAATCGAAGGAAGAGGCTGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTCTTGAATTTCTACGCGAATCAAGATGGAGAAAAGGAAGTTTTCCAATCAATCAGTGACTCAAACCTCAACCCTATCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGGCCGATCTGGTCTTTCACAATAAACGGATTAATAGATCACTCCGGAATGGCATATACATCACACATCCTGGCCTGGATCAAATAAAGACTTTGTGGTTCCAGCGGGCCACTGCTACATCCATTTCATTAGGAATTGCTGATCTTTTCACAATCCCTTCCTTCTGA

Coding sequence (CDS)

ATGGATGGTTTGATGTCTGTCTATTACCTGTTCTGTTCTTCCTCCCAAGGTGAAACCGATCATTCAGATAGATGGGGGCAGGAGAAATTGCTAGAAGAAGCCGTGGATACACTGATTGATAATGGAATCTGTGGACAACCAATGAGGGATGGCCATAATAAAGGTTACAAGTCGTTTTCCGATGTAATTGTAATTGAAGGAAAAGCAAAGACGGAAGATTTCTTTCGGGAAGGAAACTCTGCTTGGCAAACGGTTTGTAATGTAAGGGATTCAATGCAGACTTTGATGGGGCTGGCTGTTCATGTACCTTTTCTCGTTCGAGGCTCAAGTAGAGGCAGGCGCCTATTGGGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAAAGAGCGGGAATCGCCTAGGTATTTGTGCAAATCGAACCCTCTTTTTGTAATTCCTCTAATGCAATTGGAGCTTATCACCAGAAAAGTAGATAGTCCTTTGTGCCTGGCTCGGAGACTAGATCAACGCATTCAAACCCCTGTTGGTCATAGTTCTCTTTATCTAGAAATCGAAGGAAGAGGCTGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTCTTGAATTTCTACGCGAATCAAGATGGAGAAAAGGAAGTTTTCCAATCAATCAGTGACTCAAACCTCAACCCTATCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGGCCGATCTGGTCTTTCACAATAAACGGATTAATAGATCACTCCGGAATGGCATATACATCACACATCCTGGCCTGGATCAAATAAAGACTTTGTGGTTCCAGCGGGCCACTGCTACATCCATTTCATTAGGAATTGCTGATCTTTTCACAATCCCTTCCTTCTGA

Protein sequence

MDGLMSVYYLFCSSSQGETDHSDRWGQEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFREGNSAWQTVCNVRDSMQTLMGLAVHVPFLVRGSSRGRRLLGGSHFCTNSRYAYWALCIKERESPRYLCKSNPLFVIPLMQLELITRKVDSPLCLARRLDQRIQTPVGHSSLYLEIEGRGWLYKDFAGPAHMVLNFYANQDGEKEVFQSISDSNLNPIYCRTPLSVIWRYLWRADLVFHNKRINRSLRNGIYITHPGLDQIKTLWFQRATATSISLGIADLFTIPSF

Homology

[Close]

BLAST of CmaCh04G019570 vs. Swiss-Prot
Match: RPOC1_ACOAM (DNA-directed RNA polymerase subunit beta' OS=Acorus americanus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-12
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKL++EAVDTL+DNGI GQPMRDGHNK YKSFSD  VIEGK   E  FRE
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD--VIEGK---EGRFRE 369

[Close]

BLAST of CmaCh04G019570 vs. Swiss-Prot
Match: RPOC1_POPAL (DNA-directed RNA polymerase subunit beta' OS=Populus alba GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-12
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKL++EAVDTL+DNGI GQPMRDGHNK YKSFSD  VIEGK   E  FRE
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD--VIEGK---EGRFRE 369

[Close]

BLAST of CmaCh04G019570 vs. Swiss-Prot
Match: RPOC1_NUPAD (DNA-directed RNA polymerase subunit beta' OS=Nuphar advena GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-12
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKL++EAVDTL+DNGI GQPMRDGHNK YKSFSD  VIEGK   E  FRE
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD--VIEGK---EGRFRE 376

[Close]

BLAST of CmaCh04G019570 vs. Swiss-Prot
Match: RPOC1_NYMAL (DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-12
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKL++EAVDTL+DNGI GQPMRDGHNK YKSFSD  VIEGK   E  FRE
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD--VIEGK---EGRFRE 369

[Close]

BLAST of CmaCh04G019570 vs. Swiss-Prot
Match: RPOC1_PLAOC (DNA-directed RNA polymerase subunit beta' OS=Platanus occidentalis GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-12
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKL++EAVDTL+DNGI GQPMRDGHNK YKSFSD  VIEGK   E  FRE
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD--VIEGK---EGRFRE 369

[Close]

BLAST of CmaCh04G019570 vs. TrEMBL
Match: D7U0K0_VITVI (DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_09s0002g04540 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-18
Identity = 100/292 (34.25%), Postives = 131/292 (44.86%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFREGNSAWQTVC 86
           QEKL++EA+DTL+DNGI  QPM DGHNK YK FSD           DF  +G+       
Sbjct: 3   QEKLVQEAMDTLLDNGIREQPMSDGHNKVYKLFSDGF-------NADF--DGDQ------ 62

Query: 87  NVRDSMQTLMGLAVHVPFLVRGSSRGRRLLGGSHFCTNSRYAYWALCIKERESPRYL-CK 146
                      + VHVP  +   S  R LL  SH    S      + I  ++    L   
Sbjct: 63  -----------MVVHVPLSLEAQSEAR-LLMFSHMNLLSPAIGDPISIPTQDMLIGLYVL 122

Query: 147 SNPLFVIPLMQLELITRK---VDSPLCLARRLDQR---IQTPVGHSSLYLEIEGRGWLYK 206
           + P F      +     K   + SPL L  + +     I+T VGH SLY EIE       
Sbjct: 123 TKPFFCNSYDAIGAYRHKRINLYSPLWLRVKKEIPCIYIRTTVGHISLYREIEE------ 182

Query: 207 DFAGPAHMVLNFYANQDGEKEVFQSISDSNLNPIYCRTPLSVIWRYLWRADLVFHNKRIN 266
                    +  +      K  F + +DSN  P+   T  ++      R +LVFHNK I+
Sbjct: 183 --------AIQGFCRARSRKGSFTT-TDSN--PLSNLTQQNMGVLMTERVNLVFHNKVID 242

Query: 267 RSLRN----------GIYITHPGLDQIKTLWFQRATATSISLGIADLFTIPS 302
            +             G+  T   LDQ+KTL FQ++TATSISLGI DL TIPS
Sbjct: 243 GTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQSTATSISLGIDDLLTIPS 250

[Close]

BLAST of CmaCh04G019570 vs. TrEMBL
Match: A0A076L9Q2_9ASTR (DNA-directed RNA polymerase subunit (Fragment) OS=Gypothamnium pinifolium GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-12
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKLL+EAVDTL+DNGICGQPMRDGHN+GYKSFSD  VIEGK   E  FRE
Sbjct: 180 QEKLLQEAVDTLLDNGICGQPMRDGHNRGYKSFSD--VIEGK---EGRFRE 225

[Close]

BLAST of CmaCh04G019570 vs. TrEMBL
Match: A0A076L5F9_9ASTR (DNA-directed RNA polymerase subunit (Fragment) OS=Onoseris hastata GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKLL+EAVDTL+DNGICGQPMRDGHN+ YKSFSD  VIEGK   E  FRE
Sbjct: 180 QEKLLQEAVDTLLDNGICGQPMRDGHNRVYKSFSD--VIEGK---EGRFRE 225

[Close]

BLAST of CmaCh04G019570 vs. TrEMBL
Match: A0A076LCZ4_9ASTR (DNA-directed RNA polymerase subunit (Fragment) OS=Lycoseris triplinervia GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKLL+EAVDTL+DNGICGQPMRDGHN+ YKSFSD  VIEGK   E  FRE
Sbjct: 180 QEKLLQEAVDTLLDNGICGQPMRDGHNRVYKSFSD--VIEGK---EGRFRE 225

[Close]

BLAST of CmaCh04G019570 vs. TrEMBL
Match: A0A0K1EUK1_9ASTR (DNA-directed RNA polymerase subunit (Fragment) OS=Hyaloseris rubicunda GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKLL+EAVDTL+DNGICGQPMRDGHN+ YKSFSD  VIEGK   E  FRE
Sbjct: 180 QEKLLQEAVDTLLDNGICGQPMRDGHNRVYKSFSD--VIEGK---EGRFRE 225

[Close]

BLAST of CmaCh04G019570 vs. TAIR10
Match: ATCG00180.1 (ATCG00180.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-13
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKL++EAVDTL+DNGI GQPMRDGHNK YKSFSD  VIEGK   E  FRE
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD--VIEGK---EGRFRE 369

[Close]

BLAST of CmaCh04G019570 vs. TAIR10
Match: ATCG00170.1 (ATCG00170.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 248 RADLVFHNKRINRSLRN----------GIYITHPGLDQIKTLWFQRATATSISLGIADLF 302
           RA+LVFHNK I+ +             G+  T   LDQ+KTL FQ+ATATSISLGI DL 
Sbjct: 4   RANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLL 63

[Close]

BLAST of CmaCh04G019570 vs. NCBI nr
Match: gi|297743279|emb|CBI36146.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-18
Identity = 100/292 (34.25%), Postives = 131/292 (44.86%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFREGNSAWQTVC 86
           QEKL++EA+DTL+DNGI  QPM DGHNK YK FSD           DF  +G+       
Sbjct: 3   QEKLVQEAMDTLLDNGIREQPMSDGHNKVYKLFSDGF-------NADF--DGDQ------ 62

Query: 87  NVRDSMQTLMGLAVHVPFLVRGSSRGRRLLGGSHFCTNSRYAYWALCIKERESPRYL-CK 146
                      + VHVP  +   S  R LL  SH    S      + I  ++    L   
Sbjct: 63  -----------MVVHVPLSLEAQSEAR-LLMFSHMNLLSPAIGDPISIPTQDMLIGLYVL 122

Query: 147 SNPLFVIPLMQLELITRK---VDSPLCLARRLDQR---IQTPVGHSSLYLEIEGRGWLYK 206
           + P F      +     K   + SPL L  + +     I+T VGH SLY EIE       
Sbjct: 123 TKPFFCNSYDAIGAYRHKRINLYSPLWLRVKKEIPCIYIRTTVGHISLYREIEE------ 182

Query: 207 DFAGPAHMVLNFYANQDGEKEVFQSISDSNLNPIYCRTPLSVIWRYLWRADLVFHNKRIN 266
                    +  +      K  F + +DSN  P+   T  ++      R +LVFHNK I+
Sbjct: 183 --------AIQGFCRARSRKGSFTT-TDSN--PLSNLTQQNMGVLMTERVNLVFHNKVID 242

Query: 267 RSLRN----------GIYITHPGLDQIKTLWFQRATATSISLGIADLFTIPS 302
            +             G+  T   LDQ+KTL FQ++TATSISLGI DL TIPS
Sbjct: 243 GTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQSTATSISLGIDDLLTIPS 250

[Close]

BLAST of CmaCh04G019570 vs. NCBI nr
Match: gi|672235079|gb|AIJ03356.1| (RNA polymerase beta chain, partial (chloroplast) [Gypothamnium pinifolium])

HSP 1 Score: 80.9 bits (198), Expect = 4.3e-12
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKLL+EAVDTL+DNGICGQPMRDGHN+GYKSFSD  VIEGK   E  FRE
Sbjct: 180 QEKLLQEAVDTLLDNGICGQPMRDGHNRGYKSFSD--VIEGK---EGRFRE 225

[Close]

BLAST of CmaCh04G019570 vs. NCBI nr
Match: gi|672235103|gb|AIJ03368.1| (RNA polymerase beta chain, partial (chloroplast) [Lycoseris triplinervia])

HSP 1 Score: 77.4 bits (189), Expect = 4.7e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKLL+EAVDTL+DNGICGQPMRDGHN+ YKSFSD  VIEGK   E  FRE
Sbjct: 180 QEKLLQEAVDTLLDNGICGQPMRDGHNRVYKSFSD--VIEGK---EGRFRE 225

[Close]

BLAST of CmaCh04G019570 vs. NCBI nr
Match: gi|672235133|gb|AIJ03383.1| (RNA polymerase beta chain, partial (chloroplast) [Stifftia chrysantha])

HSP 1 Score: 77.4 bits (189), Expect = 4.7e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKLL+EAVDTL+DNGICGQPMRDGHN+ YKSFSD  VIEGK   E  FRE
Sbjct: 180 QEKLLQEAVDTLLDNGICGQPMRDGHNRVYKSFSD--VIEGK---EGRFRE 225

[Close]

BLAST of CmaCh04G019570 vs. NCBI nr
Match: gi|672235141|gb|AIJ03387.1| (RNA polymerase beta chain, partial (chloroplast) [Wunderlichia mirabilis])

HSP 1 Score: 77.4 bits (189), Expect = 4.7e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 27  QEKLLEEAVDTLIDNGICGQPMRDGHNKGYKSFSDVIVIEGKAKTEDFFRE 78
           QEKLL+EAVDTL+DNGICGQPMRDGHN+ YKSFSD  VIEGK   E  FRE
Sbjct: 180 QEKLLQEAVDTLLDNGICGQPMRDGHNRVYKSFSD--VIEGK---EGRFRE 225

The following BLAST results are available for this feature:

BLAST of CmaCh04G019570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPOC1_ACOAM	7.3e-12	76.47	DNA-directed RNA polymerase subunit beta' OS=Acorus americanus GN=rpoC1 PE=3 SV=...	[more]
RPOC1_POPAL	7.3e-12	76.47	DNA-directed RNA polymerase subunit beta' OS=Populus alba GN=rpoC1 PE=3 SV=1	[more]
RPOC1_NUPAD	7.3e-12	76.47	DNA-directed RNA polymerase subunit beta' OS=Nuphar advena GN=rpoC1 PE=3 SV=1	[more]
RPOC1_NYMAL	7.3e-12	76.47	DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba GN=rpoC1 PE=3 SV=2	[more]
RPOC1_PLAOC	7.3e-12	76.47	DNA-directed RNA polymerase subunit beta' OS=Platanus occidentalis GN=rpoC1 PE=3...	[more]

BLAST of CmaCh04G019570 vs. TrEMBL


Match Name	E-value	Identity	Description
D7U0K0_VITVI	3.6e-18	34.25	DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_09s0002g04540 PE=3 ...	[more]
A0A076L9Q2_9ASTR	3.0e-12	80.39	DNA-directed RNA polymerase subunit (Fragment) OS=Gypothamnium pinifolium GN=rpo...	[more]
A0A076L5F9_9ASTR	3.3e-11	78.43	DNA-directed RNA polymerase subunit (Fragment) OS=Onoseris hastata GN=rpoC1 PE=3...	[more]
A0A076LCZ4_9ASTR	3.3e-11	78.43	DNA-directed RNA polymerase subunit (Fragment) OS=Lycoseris triplinervia GN=rpoC...	[more]
A0A0K1EUK1_9ASTR	3.3e-11	78.43	DNA-directed RNA polymerase subunit (Fragment) OS=Hyaloseris rubicunda GN=rpoC1 ...	[more]

BLAST of CmaCh04G019570 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00180.1	4.1e-13	76.47	ATCG00180.1 DNA-directed RNA polymerase family protein	[more]
ATCG00170.1	1.0e-08	54.69	ATCG00170.1 DNA-directed RNA polymerase family protein	[more]

BLAST of CmaCh04G019570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|297743279\|emb\|CBI36146.3\|	5.2e-18	34.25	unnamed protein product [Vitis vinifera]	[more]
gi\|672235079\|gb\|AIJ03356.1\|	4.3e-12	80.39	RNA polymerase beta chain, partial (chloroplast) [Gypothamnium pinifolium]	[more]
gi\|672235103\|gb\|AIJ03368.1\|	4.7e-11	78.43	RNA polymerase beta chain, partial (chloroplast) [Lycoseris triplinervia]	[more]
gi\|672235133\|gb\|AIJ03383.1\|	4.7e-11	78.43	RNA polymerase beta chain, partial (chloroplast) [Stifftia chrysantha]	[more]
gi\|672235141\|gb\|AIJ03387.1\|	4.7e-11	78.43	RNA polymerase beta chain, partial (chloroplast) [Wunderlichia mirabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019570.1	CmaCh04G019570.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G019570	CmaCh08G006530	Cucurbita maxima (Rimu)	cmacmaB550

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G019570	Melon (DHL92) v3.6.1	cmamedB737
CmaCh04G019570	Watermelon (97103) v2	cmawmbB726
CmaCh04G019570	Cucurbita moschata (Rifu)	cmacmoB679
CmaCh04G019570	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G019570	Watermelon (Charleston Gray)	cmawcgB622
CmaCh04G019570	Watermelon (97103) v1	cmawmB739
CmaCh04G019570	Bottle gourd (USVL1VR-Ls)	cmalsiB635
CmaCh04G019570	Cucumber (Gy14) v2	cgybcmaB670